mRNA_A-nodosum_M_contig10354.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10354.4.1
Unique NamemRNA_A-nodosum_M_contig10354.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig10354.4.1 vs. uniprot
Match: A0A6H5KDS6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDS6_9PHAE)

HSP 1 Score: 232 bits (592), Expect = 3.760e-71
Identity = 134/268 (50.00%), Postives = 167/268 (62.31%), Query Frame = 1
Query:    1 LNIATWNVRSLSLTGRRGAGHTGVRLQKCKVLGCDVIGLQETRRPGRTEFATAGYRVFCSGVDGSTGRAGQHGVGLAVKESIIRKATWTQELTNERLMSMTFNLTGKSNAVTFIVAYGPTDTVSNTREQKAVFWADLESAVSRVPSSDYLFVLIDANARTGVRIREEDCEVIGAYGRDTRVSDSNGTSLLRFAGDNKLALVNTFFSVPKGCTSRTFNGTRPADRKRIDYIITRQPHRKLVRNVTVHLQPY----ADSDHNIVCARVRL 792
            L +ATWNVR+L++ G  G G     L +       V+G+QETRR GRTEFA AG+RVFC G +  TG  G HGVG+AVKES+ + +T+T E  +E LM+M F L G   AV F+ AY PT+   +T + K VFW  L+S V R+PS + + VL+DANARTG R+   D  VIG YGRD    + NG  LL FA  N+LAL NTFF   KG    T+NG    D KR+DYI+TRQ H   V NV V  QP     ADSDHN+V A + L
Sbjct:  113 LRVATWNVRTLAVNGANGYGRAYSVLHEAARQDVSVVGMQETRRAGRTEFAAAGFRVFCCGTE--TG--GVHGVGIAVKESLCKTSTFTTEFIDESLMAMRFLLAGHRGAVNFVAAYAPTE--PSTADSKRVFWGKLDSLVRRIPSKECVHVLMDANARTGDRLDGGDGRVIGMYGRDEL--NDNGMLLLNFATGNRLALTNTFFETRKGGIWHTYNGVSGNDCKRLDYILTRQAHHGRVSNVVVIPQPVRPVKADSDHNMVVATINL 372          
BLAST of mRNA_A-nodosum_M_contig10354.4.1 vs. uniprot
Match: A0A6H5JBD7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBD7_9PHAE)

HSP 1 Score: 230 bits (587), Expect = 1.710e-66
Identity = 134/268 (50.00%), Postives = 167/268 (62.31%), Query Frame = 1
Query:    1 LNIATWNVRSLSLTGRRGAGHTGVRLQKCKVLGCDVIGLQETRRPGRTEFATAGYRVFCSGVDGSTGRAGQHGVGLAVKESIIRKATWTQELTNERLMSMTFNLTGKSNAVTFIVAYGPTDTVSNTREQKAVFWADLESAVSRVPSSDYLFVLIDANARTGVRIREEDCEVIGAYGRDTRVSDSNGTSLLRFAGDNKLALVNTFFSVPKGCTSRTFNGTRPADRKRIDYIITRQPHRKLVRNVTVHLQPY----ADSDHNIVCARVRL 792
            L +ATWNVR+L++ G  G G     L +       V+G+QETRR GRTEFA AG+RVFC G +  TG  G HGVG+AVKES+ + +T+T E  +ERLM+M   L G   AV F+ A  PT+   +T   K VFW  L+S V R+PS + ++VL+DANARTG R+   D  VIG YGRD    + NG  LL FA +N+LAL NTFF   KG    T+NG    D KR+DYI+TRQ H   V NV V  QP     ADSDHN+V A V L
Sbjct:   58 LRVATWNVRTLAVIGVNGYGRAYSVLHEAARQDVSVVGMQETRRAGRTEFAAAGFRVFCCGTE--TG--GVHGVGIAVKESLCKTSTFTTEFIDERLMAMRLLLAGHRGAVNFVAASAPTE--PSTASSKRVFWGKLDSLVRRIPSKECVYVLLDANARTGDRLDGGDGRVIGMYGRDEL--NDNGMLLLNFATENRLALTNTFFETRKGGIWHTYNGVSGNDCKRLDYILTRQAHHGRVSNVVVIPQPVRPVKADSDHNMVVATVNL 317          
BLAST of mRNA_A-nodosum_M_contig10354.4.1 vs. uniprot
Match: A0A6H5KQZ7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ7_9PHAE)

HSP 1 Score: 227 bits (578), Expect = 3.320e-66
Identity = 127/268 (47.39%), Postives = 167/268 (62.31%), Query Frame = 1
Query:    1 LNIATWNVRSLSLTGRRGAGHTGVRLQKCKVLGCDVIGLQETRRPGRTEFATAGYRVFCSGVDGSTGRAGQHGVGLAVKESIIRKATWTQELTNERLMSMTFNLTGKSNAVTFIVAYGPTDTVSNTREQKAVFWADLESAVSRVPSSDYLFVLIDANARTGVRIREEDCEVIGAYGRDTRVSDSNGTSLLRFAGDNKLALVNTFFSVPKGCTSRTFNGTRPADRKRIDYIITRQPHRKLVRNVTVHLQPY----ADSDHNIVCARVRL 792
            + +AT+NVR+L++ G  G G     L +    G   +GLQE RRPGRTEFA +G+RVF  G D    + G HGVG+AV+E++ + + +T E  +ERLM+M F + G   AVTF+ AY PTD    T E K +FW  L+S V R P+ +YLFVL+DANA+TG  I  E+   +G YGR+    + NG  LL FA DN+LA++NTFF   K     TFNG    +R+ +DYI+TRQ HR  V N+ V  QP     ADSDHNIV A V L
Sbjct:   74 VRVATYNVRTLAVNGANGYGRADSVLHEAAKQGISFVGLQEVRRPGRTEFAASGFRVFTCGTD----KGGTHGVGIAVEETLCKSSQYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVA--TTESKHMFWEKLDSLVRRTPAKEYLFVLMDANAQTGGGIAGENERTMGEYGRNEL--NDNGRLLLTFATDNRLAVLNTFFDTRKSGIWHTFNGPSGRERRCLDYILTRQSHRDRVSNMEVVPQPVRPVRADSDHNIVVATVDL 333          
BLAST of mRNA_A-nodosum_M_contig10354.4.1 vs. uniprot
Match: A0A6H5K319_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K319_9PHAE)

HSP 1 Score: 228 bits (582), Expect = 1.080e-64
Identity = 127/268 (47.39%), Postives = 169/268 (63.06%), Query Frame = 1
Query:    1 LNIATWNVRSLSLTGRRGAGHTGVRLQKCKVLGCDVIGLQETRRPGRTEFATAGYRVFCSGVDGSTGRAGQHGVGLAVKESIIRKATWTQELTNERLMSMTFNLTGKSNAVTFIVAYGPTDTVSNTREQKAVFWADLESAVSRVPSSDYLFVLIDANARTGVRIREEDCEVIGAYGRDTRVSDSNGTSLLRFAGDNKLALVNTFFSVPKGCTSRTFNGTRPADRKRIDYIITRQPHRKLVRNVTVHLQPY----ADSDHNIVCARVRL 792
            + +AT+NVR+L++ G  G G     L +    G   +GLQE RRPGRTEFA +G+RVF  G D    + G HGVG+AV+E++ + + +T E  +ERLM+M F + G   AVTF+ AY PTD    T E K +FW  L+S V R+P+ +YLFVL+DANA+TG  I  E+   +G YGR+    + NG  LL FA DN+LA++NTFF   +G    TFNG    +R+ +DYI+TRQ HR  V N+ V  QP     ADSDHNIV A V L
Sbjct:  306 VRVATYNVRTLAVNGANGYGRADSVLHEAAKQGISFVGLQEVRRPGRTEFAASGFRVFTCGTD----KGGTHGVGIAVEETLCKSSQYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVA--TTESKHMFWEKLDSLVRRIPAKEYLFVLMDANAQTGGGIAGENEGTMGEYGRNEL--NENGELLLTFATDNRLAVLNTFFDTRRGGIWHTFNGPSGRERRCLDYILTRQAHRDRVSNMEVVPQPVRPVRADSDHNIVVATVDL 565          
BLAST of mRNA_A-nodosum_M_contig10354.4.1 vs. uniprot
Match: A0A6H5K7U5_9PHAE (Reverse transcriptase domain-containing protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U5_9PHAE)

HSP 1 Score: 227 bits (579), Expect = 1.860e-64
Identity = 127/268 (47.39%), Postives = 168/268 (62.69%), Query Frame = 1
Query:    1 LNIATWNVRSLSLTGRRGAGHTGVRLQKCKVLGCDVIGLQETRRPGRTEFATAGYRVFCSGVDGSTGRAGQHGVGLAVKESIIRKATWTQELTNERLMSMTFNLTGKSNAVTFIVAYGPTDTVSNTREQKAVFWADLESAVSRVPSSDYLFVLIDANARTGVRIREEDCEVIGAYGRDTRVSDSNGTSLLRFAGDNKLALVNTFFSVPKGCTSRTFNGTRPADRKRIDYIITRQPHRKLVRNVTVHLQPY----ADSDHNIVCARVRL 792
            + +AT+NVR+L++ G  G G     L +    G   +GLQE RRPGRTEFA +G+RVF  G D    + G HGVG+AV+E++ + + +T E  +ERLM+M F + G   AVTF+ AY PTD    T E K +FW  L+S V R P+ +YLFVL+DANA+TG  I  E+   +G YGR+    + NG  LL FA DN+LA++NTFF   +G    TFNG    +R+ +DYI+TRQ HR  V N+ V  QP     ADSDHNIV A V L
Sbjct:   19 VRVATYNVRTLAVNGANGYGRADSVLHEAAKQGISFVGLQEVRRPGRTEFAASGFRVFTCGTD----KGGTHGVGIAVEETLCKSSQYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVA--TTESKHMFWEKLDSLVRRTPAKEYLFVLMDANAQTGGGIAGENEGTMGEYGRNEL--NENGELLLTFATDNRLAVLNTFFDTRRGGIWHTFNGPSGRERRCLDYILTRQAHRDRVSNMEVVPQPVRPVRADSDHNIVVATVDL 278          
BLAST of mRNA_A-nodosum_M_contig10354.4.1 vs. uniprot
Match: A0A6H5K9G5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9G5_9PHAE)

HSP 1 Score: 221 bits (564), Expect = 2.320e-64
Identity = 123/268 (45.90%), Postives = 166/268 (61.94%), Query Frame = 1
Query:    1 LNIATWNVRSLSLTGRRGAGHTGVRLQKCKVLGCDVIGLQETRRPGRTEFATAGYRVFCSGVDGSTGRAGQHGVGLAVKESIIRKATWTQELTNERLMSMTFNLTGKSNAVTFIVAYGPTDTVSNTREQKAVFWADLESAVSRVPSSDYLFVLIDANARTGVRIREEDCEVIGAYGRDTRVSDSNGTSLLRFAGDNKLALVNTFFSVPKGCTSRTFNGTRPADRKRIDYIITRQPHRKLVRNVTVHLQPY----ADSDHNIVCARVRL 792
            + +AT+NVR+L++ G  G G     L +        +GLQE RRPGRTEF  +G+RVF  G D    + G HGVG+AV+E++ + + +T E  +ERLM+M F +TG   AV F+ AY PTD    T + K +FW  L+S V R+P+ +YLFVL+DANA+TG  I  E+   +G YGR+    + NG  LL FA DN+LA++NTFF   +     TFNG    +R+ +DYI+TRQ HR  V N+ V  QP     ADSDHNIV A V L
Sbjct:   44 VRVATYNVRTLAVNGANGYGRADKVLHEAAKQDISFVGLQEVRRPGRTEFTASGFRVFTCGTD----KGGTHGVGIAVEEALCKASQYTTEYVDERLMAMRFEMTGHRGAVNFVAAYAPTDVA--TADSKRMFWEKLDSLVRRIPAKEYLFVLMDANAQTGGGIAGENERTMGEYGRNEL--NDNGRLLLTFATDNRLAVLNTFFDTRRSGIWHTFNGPSGRERRCLDYILTRQSHRGRVSNMEVVPQPVRPVRADSDHNIVVATVDL 303          
BLAST of mRNA_A-nodosum_M_contig10354.4.1 vs. uniprot
Match: A0A6H5JLM6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLM6_9PHAE)

HSP 1 Score: 227 bits (579), Expect = 2.810e-64
Identity = 127/268 (47.39%), Postives = 168/268 (62.69%), Query Frame = 1
Query:    1 LNIATWNVRSLSLTGRRGAGHTGVRLQKCKVLGCDVIGLQETRRPGRTEFATAGYRVFCSGVDGSTGRAGQHGVGLAVKESIIRKATWTQELTNERLMSMTFNLTGKSNAVTFIVAYGPTDTVSNTREQKAVFWADLESAVSRVPSSDYLFVLIDANARTGVRIREEDCEVIGAYGRDTRVSDSNGTSLLRFAGDNKLALVNTFFSVPKGCTSRTFNGTRPADRKRIDYIITRQPHRKLVRNVTVHLQPY----ADSDHNIVCARVRL 792
            + +AT+NVR+L++ G  G G     L +    G   +GLQE RRPGRTEFA +G+RVF  G D    + G HGVG+AV+E++ + + +T E  +ERLM+M F + G   AVTF+ AY PTD    T E K +FW  L+S V R P+ +YLFVL+DANA+TG  I  E+   +G YGR+    + NG  LL FA DN+LA++NTFF   +G    TFNG    +R+ +DYI+TRQ HR  V N+ V  QP     ADSDHNIV A V L
Sbjct:  510 VRVATYNVRTLAVNGANGYGRADSVLHEAAKQGISFVGLQEVRRPGRTEFAASGFRVFTCGTD----KGGTHGVGIAVEETLCKSSQYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVA--TTESKHMFWEKLDSLVRRTPAKEYLFVLMDANAQTGGGIAGENEGTMGEYGRNEL--NENGELLLTFATDNRLAVLNTFFDTRRGGIWHTFNGPSGRERRCLDYILTRQAHRDRVSNMEVVPQPVRPVRADSDHNIVVATVDL 769          
BLAST of mRNA_A-nodosum_M_contig10354.4.1 vs. uniprot
Match: A0A6H5JY99_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY99_9PHAE)

HSP 1 Score: 210 bits (535), Expect = 8.380e-62
Identity = 120/268 (44.78%), Postives = 163/268 (60.82%), Query Frame = 1
Query:    1 LNIATWNVRSLSLTGRRGAGHTGVRLQKCKVLGCDVIGLQETRRPGRTEFATAGYRVFCSGVDGSTGRAGQHGVGLAVKESIIRKATWTQELTNERLMSMTFNLTGKSNAVTFIVAYGPTDTVSNTREQKAVFWADLESAVSRVPSSDYLFVLIDANARTGVRIREEDCEVIGAYGRDTRVSDSNGTSLLRFAGDNKLALVNTFFSVPKGCTSRTFNGTRPADRKRIDYIITRQPHRKLVRNVTVHLQPY----ADSDHNIVCARVRL 792
            + +AT+NVR+L++    G       L +        +GLQE RRPGRTEFA +G+RVF  G D    + G HGVG+AV+E++ + + +T    +ERLM+M F +TG   AV F+ AY PTD    T + K +FW  L+S V R+P+ + LFVL+DANA+TG  I  E+   +G YGR+    + NG  LL FA DN+LA++NTFF   +     TFNG    +R+ +DYI+TRQ HR  V N+ V  QP     ADSDHNIV A V L
Sbjct:   19 VRVATYNVRTLAVNLANGYRRADSVLHEAAKQDISFVGLQEVRRPGRTEFAASGFRVFTCGTD----KGGTHGVGIAVEEALCKASQYTTGYVDERLMAMRFEMTGHRGAVNFVAAYAPTDVA--TADSKCIFWEKLDSLVRRIPAKECLFVLMDANAQTGGGIAGENEGTMGEYGRNEL--NDNGRLLLTFATDNRLAVLNTFFDTRRSGIWHTFNGPSGRERRCLDYILTRQSHRGRVSNMEVVPQPVRPVRADSDHNIVVATVDL 278          
BLAST of mRNA_A-nodosum_M_contig10354.4.1 vs. uniprot
Match: A0A6H5KFG7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFG7_9PHAE)

HSP 1 Score: 196 bits (497), Expect = 6.840e-58
Identity = 112/237 (47.26%), Postives = 149/237 (62.87%), Query Frame = 1
Query:  100 CDV--IGLQETRRPGRTEFATAGYRVFCSGVDGSTGRAGQHGVGLAVKESIIRKATWTQELTNERLMSMTFNLTGKSNAVTFIVAYGPTDTVSNTREQKAVFWADLESAVSRVPSSDYLFVLIDANARTGVRIREEDCEVIGAYGRDTRVSDSNGTSLLRFAGDNKLALVNTFFSVPKGCTSRTFNGTRPADRKRIDYIITRQPHRKLVRNVTVHLQPY----ADSDHNIVCARVRL 792
            CD+  +GLQE RRPGRTEF  +G+RVF  G D    + G HGVG+AV+E++ + + +T E  +ERLM+M F +TG   AV F+ A   TD    T + K +FW  L+S V R+P+ + LFVL+DANA+TG  I  E+   +G YGR+    + NG  LL FA DN+LA++NTFF   +     TFNG    +R+ +DYI+TRQ HR  V N+ V  QP     ADSDHNIV A V L
Sbjct:    2 CDISFVGLQEVRRPGRTEFTASGFRVFTCGTD----KGGTHGVGIAVEEALCKASQYTTEYVDERLMAMRFEMTGHRGAVNFVAACASTDVA--TADSKRMFWEKLDSLVRRIPAKECLFVLMDANAQTGGGIDGENEGTMGEYGRNEL--NDNGRLLLTFATDNRLAVLNTFFDTRRSGIWHTFNGPSGRERRCLDYILTRQAHRGRVSNMEVVPQPVRPVRADSDHNIVVATVDL 230          
BLAST of mRNA_A-nodosum_M_contig10354.4.1 vs. uniprot
Match: A0A6H5JX07_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX07_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 5.630e-57
Identity = 112/232 (48.28%), Postives = 147/232 (63.36%), Query Frame = 1
Query:  109 IGLQETRRPGRTEFATAGYRVFCSGVDGSTGRAGQHGVGLAVKESIIRKATWTQELTNERLMSMTFNLTGKSNAVTFIVAYGPTDTVSNTREQKAVFWADLESAVSRVPSSDYLFVLIDANARTGVRIREEDCEVIGAYGRDTRVSDSNGTSLLRFAGDNKLALVNTFFSVPKGCTSRTFNGTRPADRKRIDYIITRQPHRKLVRNVTVHLQPY----ADSDHNIVCARVRL 792
            IGLQE RRPGRTEF  +G+RVF  G D    + G HGVG+AV+E++ + + +T E  +ERLM+M F +TG   AV F+ AY PTD    T + K +FW  L+S V R+P+ + LFVL+DANA+T   I  E+   +G YGR+    + NG  LL FA DN+LA++NTFF   +     TFNG    +R+ +DYI+TRQ HR  V N+ V  QP     ADSDHNIV A V L
Sbjct:   20 IGLQEVRRPGRTEFTASGFRVFTCGTD----KGGTHGVGIAVEEALRKASHYTTEYVDERLMAMRFEMTGHRGAVNFVAAYAPTDVA--TADSKRMFWEKLDSLVRRIPAKECLFVLMDANAQTERGIAGENEGTMGEYGRNEL--NDNGRLLLTFATDNRLAVLNTFFDTRRSGIWHTFNGPSGRERRYLDYILTRQSHRGRVSNMEVVPQPVRPVRADSDHNIVVATVDL 243          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10354.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KDS6_9PHAE3.760e-7150.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBD7_9PHAE1.710e-6650.00Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KQZ7_9PHAE3.320e-6647.39Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K319_9PHAE1.080e-6447.39Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K7U5_9PHAE1.860e-6447.39Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K9G5_9PHAE2.320e-6445.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLM6_9PHAE2.810e-6447.39Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JY99_9PHAE8.380e-6244.78Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KFG7_9PHAE6.840e-5847.26Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JX07_9PHAE5.630e-5748.28Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10354contigA-nodosum_M_contig10354:11965..12756 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog6500.XP_005107471.1
PFAMsExo_endo_phos,Exo_endo_phos_2
Model size792
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.28e-20
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39VM0@33154|Opisthokonta,3BKMM@33208|Metazoa,3D1CS@33213|Bilateria
DescriptionEndonuclease/Exonuclease/phosphatase family
Cds size792
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866404.6419845-CDS-A-nodosum_M_contig10354:11964..127561680866404.6419845-CDS-A-nodosum_M_contig10354:11964..12756Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10354 11965..12756 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10354.4.1prot_A-nodosum_M_contig10354.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10354 11965..12756 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10354.4.1

>prot_A-nodosum_M_contig10354.4.1 ID=prot_A-nodosum_M_contig10354.4.1|Name=mRNA_A-nodosum_M_contig10354.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=264bp
LNIATWNVRSLSLTGRRGAGHTGVRLQKCKVLGCDVIGLQETRRPGRTEF
ATAGYRVFCSGVDGSTGRAGQHGVGLAVKESIIRKATWTQELTNERLMSM
TFNLTGKSNAVTFIVAYGPTDTVSNTREQKAVFWADLESAVSRVPSSDYL
FVLIDANARTGVRIREEDCEVIGAYGRDTRVSDSNGTSLLRFAGDNKLAL
VNTFFSVPKGCTSRTFNGTRPADRKRIDYIITRQPHRKLVRNVTVHLQPY
ADSDHNIVCARVRL
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mRNA from alignment at A-nodosum_M_contig10354:11965..12756+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10354.4.1 ID=mRNA_A-nodosum_M_contig10354.4.1|Name=mRNA_A-nodosum_M_contig10354.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=792bp|location=Sequence derived from alignment at A-nodosum_M_contig10354:11965..12756+ (Ascophyllum nodosum dioecious)
CTCAACATAGCGACCTGGAATGTTCGTTCACTGTCCCTTACGGGACGCCG TGGGGCCGGCCATACGGGGGTGCGTTTGCAGAAATGTAAAGTGCTCGGCT GTGACGTCATAGGACTACAGGAGACTCGAAGACCGGGGCGGACTGAATTT GCCACGGCAGGATACCGCGTGTTCTGTAGCGGGGTAGACGGGAGCACTGG CCGGGCTGGACAGCATGGGGTGGGACTAGCGGTCAAGGAGTCTATCATCC GCAAAGCTACATGGACACAGGAGCTCACGAACGAGCGCCTGATGTCGATG ACTTTCAACTTGACAGGCAAGTCCAACGCTGTCACCTTTATTGTGGCATA TGGCCCGACAGATACTGTGTCCAATACGCGGGAACAGAAGGCTGTGTTTT GGGCGGATTTGGAAAGTGCTGTTAGCCGAGTGCCCAGCAGCGACTATCTG TTTGTTTTAATAGATGCTAATGCTAGAACTGGTGTACGTATAAGAGAGGA GGACTGTGAAGTAATTGGGGCATACGGCAGGGACACCCGGGTGAGCGACA GCAACGGAACCTCGCTTCTGCGGTTTGCGGGTGACAACAAGCTTGCCCTC GTCAACACATTCTTCTCCGTCCCCAAGGGATGCACGTCTCGAACATTCAA CGGTACCCGGCCCGCGGATAGGAAACGTATTGACTATATAATCACGCGAC AACCACATCGCAAGCTTGTCCGAAATGTCACTGTTCACTTGCAGCCGTAT GCGGATTCTGACCACAATATCGTGTGCGCAAGAGTCCGCCTC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10354:11965..12756+

>mRNA_A-nodosum_M_contig10354.4.1 ID=mRNA_A-nodosum_M_contig10354.4.1|Name=mRNA_A-nodosum_M_contig10354.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at A-nodosum_M_contig10354:11965..12756+ (Ascophyllum nodosum dioecious)
CTCAACATAGCGACCTGGAATGTTCGTTCACTGTCCCTTACGGGACGCCG
TGGGGCCGGCCATACGGGGGTGCGTTTGCAGAAATGTAAAGTGCTCGGCT
GTGACGTCATAGGACTACAGGAGACTCGAAGACCGGGGCGGACTGAATTT
GCCACGGCAGGATACCGCGTGTTCTGTAGCGGGGTAGACGGGAGCACTGG
CCGGGCTGGACAGCATGGGGTGGGACTAGCGGTCAAGGAGTCTATCATCC
GCAAAGCTACATGGACACAGGAGCTCACGAACGAGCGCCTGATGTCGATG
ACTTTCAACTTGACAGGCAAGTCCAACGCTGTCACCTTTATTGTGGCATA
TGGCCCGACAGATACTGTGTCCAATACGCGGGAACAGAAGGCTGTGTTTT
GGGCGGATTTGGAAAGTGCTGTTAGCCGAGTGCCCAGCAGCGACTATCTG
TTTGTTTTAATAGATGCTAATGCTAGAACTGGTGTACGTATAAGAGAGGA
GGACTGTGAAGTAATTGGGGCATACGGCAGGGACACCCGGGTGAGCGACA
GCAACGGAACCTCGCTTCTGCGGTTTGCGGGTGACAACAAGCTTGCCCTC
GTCAACACATTCTTCTCCGTCCCCAAGGGATGCACGTCTCGAACATTCAA
CGGTACCCGGCCCGCGGATAGGAAACGTATTGACTATATAATCACGCGAC
AACCACATCGCAAGCTTGTCCGAAATGTCACTGTTCACTTGCAGCCGTAT
GCGGATTCTGACCACAATATCGTGTGCGCAAGAGTCCGCCTC
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