mRNA_A-nodosum_M_contig10354.4.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig10354.4.1 vs. uniprot
Match: A0A6H5KDS6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDS6_9PHAE) HSP 1 Score: 232 bits (592), Expect = 3.760e-71 Identity = 134/268 (50.00%), Postives = 167/268 (62.31%), Query Frame = 1
Query: 1 LNIATWNVRSLSLTGRRGAGHTGVRLQKCKVLGCDVIGLQETRRPGRTEFATAGYRVFCSGVDGSTGRAGQHGVGLAVKESIIRKATWTQELTNERLMSMTFNLTGKSNAVTFIVAYGPTDTVSNTREQKAVFWADLESAVSRVPSSDYLFVLIDANARTGVRIREEDCEVIGAYGRDTRVSDSNGTSLLRFAGDNKLALVNTFFSVPKGCTSRTFNGTRPADRKRIDYIITRQPHRKLVRNVTVHLQPY----ADSDHNIVCARVRL 792
L +ATWNVR+L++ G G G L + V+G+QETRR GRTEFA AG+RVFC G + TG G HGVG+AVKES+ + +T+T E +E LM+M F L G AV F+ AY PT+ +T + K VFW L+S V R+PS + + VL+DANARTG R+ D VIG YGRD + NG LL FA N+LAL NTFF KG T+NG D KR+DYI+TRQ H V NV V QP ADSDHN+V A + L
Sbjct: 113 LRVATWNVRTLAVNGANGYGRAYSVLHEAARQDVSVVGMQETRRAGRTEFAAAGFRVFCCGTE--TG--GVHGVGIAVKESLCKTSTFTTEFIDESLMAMRFLLAGHRGAVNFVAAYAPTE--PSTADSKRVFWGKLDSLVRRIPSKECVHVLMDANARTGDRLDGGDGRVIGMYGRDEL--NDNGMLLLNFATGNRLALTNTFFETRKGGIWHTYNGVSGNDCKRLDYILTRQAHHGRVSNVVVIPQPVRPVKADSDHNMVVATINL 372
BLAST of mRNA_A-nodosum_M_contig10354.4.1 vs. uniprot
Match: A0A6H5JBD7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBD7_9PHAE) HSP 1 Score: 230 bits (587), Expect = 1.710e-66 Identity = 134/268 (50.00%), Postives = 167/268 (62.31%), Query Frame = 1
Query: 1 LNIATWNVRSLSLTGRRGAGHTGVRLQKCKVLGCDVIGLQETRRPGRTEFATAGYRVFCSGVDGSTGRAGQHGVGLAVKESIIRKATWTQELTNERLMSMTFNLTGKSNAVTFIVAYGPTDTVSNTREQKAVFWADLESAVSRVPSSDYLFVLIDANARTGVRIREEDCEVIGAYGRDTRVSDSNGTSLLRFAGDNKLALVNTFFSVPKGCTSRTFNGTRPADRKRIDYIITRQPHRKLVRNVTVHLQPY----ADSDHNIVCARVRL 792
L +ATWNVR+L++ G G G L + V+G+QETRR GRTEFA AG+RVFC G + TG G HGVG+AVKES+ + +T+T E +ERLM+M L G AV F+ A PT+ +T K VFW L+S V R+PS + ++VL+DANARTG R+ D VIG YGRD + NG LL FA +N+LAL NTFF KG T+NG D KR+DYI+TRQ H V NV V QP ADSDHN+V A V L
Sbjct: 58 LRVATWNVRTLAVIGVNGYGRAYSVLHEAARQDVSVVGMQETRRAGRTEFAAAGFRVFCCGTE--TG--GVHGVGIAVKESLCKTSTFTTEFIDERLMAMRLLLAGHRGAVNFVAASAPTE--PSTASSKRVFWGKLDSLVRRIPSKECVYVLLDANARTGDRLDGGDGRVIGMYGRDEL--NDNGMLLLNFATENRLALTNTFFETRKGGIWHTYNGVSGNDCKRLDYILTRQAHHGRVSNVVVIPQPVRPVKADSDHNMVVATVNL 317
BLAST of mRNA_A-nodosum_M_contig10354.4.1 vs. uniprot
Match: A0A6H5KQZ7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ7_9PHAE) HSP 1 Score: 227 bits (578), Expect = 3.320e-66 Identity = 127/268 (47.39%), Postives = 167/268 (62.31%), Query Frame = 1
Query: 1 LNIATWNVRSLSLTGRRGAGHTGVRLQKCKVLGCDVIGLQETRRPGRTEFATAGYRVFCSGVDGSTGRAGQHGVGLAVKESIIRKATWTQELTNERLMSMTFNLTGKSNAVTFIVAYGPTDTVSNTREQKAVFWADLESAVSRVPSSDYLFVLIDANARTGVRIREEDCEVIGAYGRDTRVSDSNGTSLLRFAGDNKLALVNTFFSVPKGCTSRTFNGTRPADRKRIDYIITRQPHRKLVRNVTVHLQPY----ADSDHNIVCARVRL 792
+ +AT+NVR+L++ G G G L + G +GLQE RRPGRTEFA +G+RVF G D + G HGVG+AV+E++ + + +T E +ERLM+M F + G AVTF+ AY PTD T E K +FW L+S V R P+ +YLFVL+DANA+TG I E+ +G YGR+ + NG LL FA DN+LA++NTFF K TFNG +R+ +DYI+TRQ HR V N+ V QP ADSDHNIV A V L
Sbjct: 74 VRVATYNVRTLAVNGANGYGRADSVLHEAAKQGISFVGLQEVRRPGRTEFAASGFRVFTCGTD----KGGTHGVGIAVEETLCKSSQYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVA--TTESKHMFWEKLDSLVRRTPAKEYLFVLMDANAQTGGGIAGENERTMGEYGRNEL--NDNGRLLLTFATDNRLAVLNTFFDTRKSGIWHTFNGPSGRERRCLDYILTRQSHRDRVSNMEVVPQPVRPVRADSDHNIVVATVDL 333
BLAST of mRNA_A-nodosum_M_contig10354.4.1 vs. uniprot
Match: A0A6H5K319_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K319_9PHAE) HSP 1 Score: 228 bits (582), Expect = 1.080e-64 Identity = 127/268 (47.39%), Postives = 169/268 (63.06%), Query Frame = 1
Query: 1 LNIATWNVRSLSLTGRRGAGHTGVRLQKCKVLGCDVIGLQETRRPGRTEFATAGYRVFCSGVDGSTGRAGQHGVGLAVKESIIRKATWTQELTNERLMSMTFNLTGKSNAVTFIVAYGPTDTVSNTREQKAVFWADLESAVSRVPSSDYLFVLIDANARTGVRIREEDCEVIGAYGRDTRVSDSNGTSLLRFAGDNKLALVNTFFSVPKGCTSRTFNGTRPADRKRIDYIITRQPHRKLVRNVTVHLQPY----ADSDHNIVCARVRL 792
+ +AT+NVR+L++ G G G L + G +GLQE RRPGRTEFA +G+RVF G D + G HGVG+AV+E++ + + +T E +ERLM+M F + G AVTF+ AY PTD T E K +FW L+S V R+P+ +YLFVL+DANA+TG I E+ +G YGR+ + NG LL FA DN+LA++NTFF +G TFNG +R+ +DYI+TRQ HR V N+ V QP ADSDHNIV A V L
Sbjct: 306 VRVATYNVRTLAVNGANGYGRADSVLHEAAKQGISFVGLQEVRRPGRTEFAASGFRVFTCGTD----KGGTHGVGIAVEETLCKSSQYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVA--TTESKHMFWEKLDSLVRRIPAKEYLFVLMDANAQTGGGIAGENEGTMGEYGRNEL--NENGELLLTFATDNRLAVLNTFFDTRRGGIWHTFNGPSGRERRCLDYILTRQAHRDRVSNMEVVPQPVRPVRADSDHNIVVATVDL 565
BLAST of mRNA_A-nodosum_M_contig10354.4.1 vs. uniprot
Match: A0A6H5K7U5_9PHAE (Reverse transcriptase domain-containing protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U5_9PHAE) HSP 1 Score: 227 bits (579), Expect = 1.860e-64 Identity = 127/268 (47.39%), Postives = 168/268 (62.69%), Query Frame = 1
Query: 1 LNIATWNVRSLSLTGRRGAGHTGVRLQKCKVLGCDVIGLQETRRPGRTEFATAGYRVFCSGVDGSTGRAGQHGVGLAVKESIIRKATWTQELTNERLMSMTFNLTGKSNAVTFIVAYGPTDTVSNTREQKAVFWADLESAVSRVPSSDYLFVLIDANARTGVRIREEDCEVIGAYGRDTRVSDSNGTSLLRFAGDNKLALVNTFFSVPKGCTSRTFNGTRPADRKRIDYIITRQPHRKLVRNVTVHLQPY----ADSDHNIVCARVRL 792
+ +AT+NVR+L++ G G G L + G +GLQE RRPGRTEFA +G+RVF G D + G HGVG+AV+E++ + + +T E +ERLM+M F + G AVTF+ AY PTD T E K +FW L+S V R P+ +YLFVL+DANA+TG I E+ +G YGR+ + NG LL FA DN+LA++NTFF +G TFNG +R+ +DYI+TRQ HR V N+ V QP ADSDHNIV A V L
Sbjct: 19 VRVATYNVRTLAVNGANGYGRADSVLHEAAKQGISFVGLQEVRRPGRTEFAASGFRVFTCGTD----KGGTHGVGIAVEETLCKSSQYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVA--TTESKHMFWEKLDSLVRRTPAKEYLFVLMDANAQTGGGIAGENEGTMGEYGRNEL--NENGELLLTFATDNRLAVLNTFFDTRRGGIWHTFNGPSGRERRCLDYILTRQAHRDRVSNMEVVPQPVRPVRADSDHNIVVATVDL 278
BLAST of mRNA_A-nodosum_M_contig10354.4.1 vs. uniprot
Match: A0A6H5K9G5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9G5_9PHAE) HSP 1 Score: 221 bits (564), Expect = 2.320e-64 Identity = 123/268 (45.90%), Postives = 166/268 (61.94%), Query Frame = 1
Query: 1 LNIATWNVRSLSLTGRRGAGHTGVRLQKCKVLGCDVIGLQETRRPGRTEFATAGYRVFCSGVDGSTGRAGQHGVGLAVKESIIRKATWTQELTNERLMSMTFNLTGKSNAVTFIVAYGPTDTVSNTREQKAVFWADLESAVSRVPSSDYLFVLIDANARTGVRIREEDCEVIGAYGRDTRVSDSNGTSLLRFAGDNKLALVNTFFSVPKGCTSRTFNGTRPADRKRIDYIITRQPHRKLVRNVTVHLQPY----ADSDHNIVCARVRL 792
+ +AT+NVR+L++ G G G L + +GLQE RRPGRTEF +G+RVF G D + G HGVG+AV+E++ + + +T E +ERLM+M F +TG AV F+ AY PTD T + K +FW L+S V R+P+ +YLFVL+DANA+TG I E+ +G YGR+ + NG LL FA DN+LA++NTFF + TFNG +R+ +DYI+TRQ HR V N+ V QP ADSDHNIV A V L
Sbjct: 44 VRVATYNVRTLAVNGANGYGRADKVLHEAAKQDISFVGLQEVRRPGRTEFTASGFRVFTCGTD----KGGTHGVGIAVEEALCKASQYTTEYVDERLMAMRFEMTGHRGAVNFVAAYAPTDVA--TADSKRMFWEKLDSLVRRIPAKEYLFVLMDANAQTGGGIAGENERTMGEYGRNEL--NDNGRLLLTFATDNRLAVLNTFFDTRRSGIWHTFNGPSGRERRCLDYILTRQSHRGRVSNMEVVPQPVRPVRADSDHNIVVATVDL 303
BLAST of mRNA_A-nodosum_M_contig10354.4.1 vs. uniprot
Match: A0A6H5JLM6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLM6_9PHAE) HSP 1 Score: 227 bits (579), Expect = 2.810e-64 Identity = 127/268 (47.39%), Postives = 168/268 (62.69%), Query Frame = 1
Query: 1 LNIATWNVRSLSLTGRRGAGHTGVRLQKCKVLGCDVIGLQETRRPGRTEFATAGYRVFCSGVDGSTGRAGQHGVGLAVKESIIRKATWTQELTNERLMSMTFNLTGKSNAVTFIVAYGPTDTVSNTREQKAVFWADLESAVSRVPSSDYLFVLIDANARTGVRIREEDCEVIGAYGRDTRVSDSNGTSLLRFAGDNKLALVNTFFSVPKGCTSRTFNGTRPADRKRIDYIITRQPHRKLVRNVTVHLQPY----ADSDHNIVCARVRL 792
+ +AT+NVR+L++ G G G L + G +GLQE RRPGRTEFA +G+RVF G D + G HGVG+AV+E++ + + +T E +ERLM+M F + G AVTF+ AY PTD T E K +FW L+S V R P+ +YLFVL+DANA+TG I E+ +G YGR+ + NG LL FA DN+LA++NTFF +G TFNG +R+ +DYI+TRQ HR V N+ V QP ADSDHNIV A V L
Sbjct: 510 VRVATYNVRTLAVNGANGYGRADSVLHEAAKQGISFVGLQEVRRPGRTEFAASGFRVFTCGTD----KGGTHGVGIAVEETLCKSSQYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVA--TTESKHMFWEKLDSLVRRTPAKEYLFVLMDANAQTGGGIAGENEGTMGEYGRNEL--NENGELLLTFATDNRLAVLNTFFDTRRGGIWHTFNGPSGRERRCLDYILTRQAHRDRVSNMEVVPQPVRPVRADSDHNIVVATVDL 769
BLAST of mRNA_A-nodosum_M_contig10354.4.1 vs. uniprot
Match: A0A6H5JY99_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY99_9PHAE) HSP 1 Score: 210 bits (535), Expect = 8.380e-62 Identity = 120/268 (44.78%), Postives = 163/268 (60.82%), Query Frame = 1
Query: 1 LNIATWNVRSLSLTGRRGAGHTGVRLQKCKVLGCDVIGLQETRRPGRTEFATAGYRVFCSGVDGSTGRAGQHGVGLAVKESIIRKATWTQELTNERLMSMTFNLTGKSNAVTFIVAYGPTDTVSNTREQKAVFWADLESAVSRVPSSDYLFVLIDANARTGVRIREEDCEVIGAYGRDTRVSDSNGTSLLRFAGDNKLALVNTFFSVPKGCTSRTFNGTRPADRKRIDYIITRQPHRKLVRNVTVHLQPY----ADSDHNIVCARVRL 792
+ +AT+NVR+L++ G L + +GLQE RRPGRTEFA +G+RVF G D + G HGVG+AV+E++ + + +T +ERLM+M F +TG AV F+ AY PTD T + K +FW L+S V R+P+ + LFVL+DANA+TG I E+ +G YGR+ + NG LL FA DN+LA++NTFF + TFNG +R+ +DYI+TRQ HR V N+ V QP ADSDHNIV A V L
Sbjct: 19 VRVATYNVRTLAVNLANGYRRADSVLHEAAKQDISFVGLQEVRRPGRTEFAASGFRVFTCGTD----KGGTHGVGIAVEEALCKASQYTTGYVDERLMAMRFEMTGHRGAVNFVAAYAPTDVA--TADSKCIFWEKLDSLVRRIPAKECLFVLMDANAQTGGGIAGENEGTMGEYGRNEL--NDNGRLLLTFATDNRLAVLNTFFDTRRSGIWHTFNGPSGRERRCLDYILTRQSHRGRVSNMEVVPQPVRPVRADSDHNIVVATVDL 278
BLAST of mRNA_A-nodosum_M_contig10354.4.1 vs. uniprot
Match: A0A6H5KFG7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFG7_9PHAE) HSP 1 Score: 196 bits (497), Expect = 6.840e-58 Identity = 112/237 (47.26%), Postives = 149/237 (62.87%), Query Frame = 1
Query: 100 CDV--IGLQETRRPGRTEFATAGYRVFCSGVDGSTGRAGQHGVGLAVKESIIRKATWTQELTNERLMSMTFNLTGKSNAVTFIVAYGPTDTVSNTREQKAVFWADLESAVSRVPSSDYLFVLIDANARTGVRIREEDCEVIGAYGRDTRVSDSNGTSLLRFAGDNKLALVNTFFSVPKGCTSRTFNGTRPADRKRIDYIITRQPHRKLVRNVTVHLQPY----ADSDHNIVCARVRL 792
CD+ +GLQE RRPGRTEF +G+RVF G D + G HGVG+AV+E++ + + +T E +ERLM+M F +TG AV F+ A TD T + K +FW L+S V R+P+ + LFVL+DANA+TG I E+ +G YGR+ + NG LL FA DN+LA++NTFF + TFNG +R+ +DYI+TRQ HR V N+ V QP ADSDHNIV A V L
Sbjct: 2 CDISFVGLQEVRRPGRTEFTASGFRVFTCGTD----KGGTHGVGIAVEEALCKASQYTTEYVDERLMAMRFEMTGHRGAVNFVAACASTDVA--TADSKRMFWEKLDSLVRRIPAKECLFVLMDANAQTGGGIDGENEGTMGEYGRNEL--NDNGRLLLTFATDNRLAVLNTFFDTRRSGIWHTFNGPSGRERRCLDYILTRQAHRGRVSNMEVVPQPVRPVRADSDHNIVVATVDL 230
BLAST of mRNA_A-nodosum_M_contig10354.4.1 vs. uniprot
Match: A0A6H5JX07_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX07_9PHAE) HSP 1 Score: 197 bits (500), Expect = 5.630e-57 Identity = 112/232 (48.28%), Postives = 147/232 (63.36%), Query Frame = 1
Query: 109 IGLQETRRPGRTEFATAGYRVFCSGVDGSTGRAGQHGVGLAVKESIIRKATWTQELTNERLMSMTFNLTGKSNAVTFIVAYGPTDTVSNTREQKAVFWADLESAVSRVPSSDYLFVLIDANARTGVRIREEDCEVIGAYGRDTRVSDSNGTSLLRFAGDNKLALVNTFFSVPKGCTSRTFNGTRPADRKRIDYIITRQPHRKLVRNVTVHLQPY----ADSDHNIVCARVRL 792
IGLQE RRPGRTEF +G+RVF G D + G HGVG+AV+E++ + + +T E +ERLM+M F +TG AV F+ AY PTD T + K +FW L+S V R+P+ + LFVL+DANA+T I E+ +G YGR+ + NG LL FA DN+LA++NTFF + TFNG +R+ +DYI+TRQ HR V N+ V QP ADSDHNIV A V L
Sbjct: 20 IGLQEVRRPGRTEFTASGFRVFTCGTD----KGGTHGVGIAVEEALRKASHYTTEYVDERLMAMRFEMTGHRGAVNFVAAYAPTDVA--TADSKRMFWEKLDSLVRRIPAKECLFVLMDANAQTERGIAGENEGTMGEYGRNEL--NDNGRLLLTFATDNRLAVLNTFFDTRRSGIWHTFNGPSGRERRYLDYILTRQSHRGRVSNMEVVPQPVRPVRADSDHNIVVATVDL 243 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10354.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig10354.4.1 >prot_A-nodosum_M_contig10354.4.1 ID=prot_A-nodosum_M_contig10354.4.1|Name=mRNA_A-nodosum_M_contig10354.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=264bp LNIATWNVRSLSLTGRRGAGHTGVRLQKCKVLGCDVIGLQETRRPGRTEFback to top mRNA from alignment at A-nodosum_M_contig10354:11965..12756+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig10354.4.1 ID=mRNA_A-nodosum_M_contig10354.4.1|Name=mRNA_A-nodosum_M_contig10354.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=792bp|location=Sequence derived from alignment at A-nodosum_M_contig10354:11965..12756+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig10354:11965..12756+ >mRNA_A-nodosum_M_contig10354.4.1 ID=mRNA_A-nodosum_M_contig10354.4.1|Name=mRNA_A-nodosum_M_contig10354.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at A-nodosum_M_contig10354:11965..12756+ (Ascophyllum nodosum dioecious)back to top |