mRNA_A-nodosum_M_contig1031.48.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1031.48.1
Unique NamemRNA_A-nodosum_M_contig1031.48.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1031.48.1 vs. uniprot
Match: A0A6H5JS72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS72_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.550e-17
Identity = 71/208 (34.13%), Postives = 100/208 (48.08%), Query Frame = 2 
Query:  308 SMAVGAPRARLFTASWPCFNGNLVDGESPTSKELPWLITDPYCKVTVRALPRGSLQQTSLNSGVAREQEDTFPSVANIAAVADIDRGVGSEDRGVGVDDPIFVESSLLMRNFNSISLSSDGRYSLTLSECHGFMADTTTT----------NTLNGEGF-----EGEAYSDAPLLFLPLPHSIVFDVDDKIPNGRG-VIGNFHLLPIAH 883
            S+A G   +R+FTA+WP +      GE     +     + PYC+V +R L                         A  +  A I     +   G G  D +FV+  LL+R++NS+SLS DG YSLTLS+CHGF+   T++           + N +G      E +      LLFLPLP SI F+V+ +     G +IGNFHLLP+AH
Sbjct:   35 SVATGGA-SRVFTATWPPYTPASTRGEDHQQADRDDRESGPYCQVAIRTLR------------------------ARTSGAAFISSSEATTGHGEG-GDLLFVQPGLLLRSYNSVSLSDDGAYSLTLSDCHGFIPIATSSPDRPASSPPWRSRNHDGGAAGRPEWQMAEIGRLLFLPLPSSIDFEVNRRQATSSGAIIGNFHLLPVAH 216
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BLAST of mRNA_A-nodosum_M_contig1031.48.1 vs. uniprot
Match: D7FIC8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIC8_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 1.990e-14
Identity = 62/168 (36.90%), Postives = 83/168 (49.40%), Query Frame = 2 
Query:  428 PYCKVTVRALPRGSLQQTSLNSGVAREQEDTFPSVANIAAVADIDRGVGSEDRGVGVDDPIFVESSLLMRNFNSISLSSDGRYSLTLSECHGFMADTTTT----------NTLNGEGF-----EGEAYSDAPLLFLPLPHSIVFDVDDKIPNGRG-VIGNFHLLPIAH 883
            PYC+V +R L                         A  +  A I     + D+G G  D +FVE  LL+R++NS+SLS DG YSLTLS+C+GFM  TT++           + N +G      E +      +LFLPLP S+ F V+       G VIGNFHLLP+AH
Sbjct:   18 PYCQVAIRTLR------------------------ARTSGAAFISSSEATTDQGEG-GDLLFVERELLVRSYNSVSLSDDGTYSLTLSDCYGFMPITTSSPARRVSSASWRSRNHDGADAGRRERQTAEIVRILFLPLPSSMEFVVNSGQATSSGTVIGNFHLLPVAH 160
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1031.48.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JS72_9PHAE1.550e-1734.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIC8_ECTSI1.990e-1436.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1031contigA-nodosum_M_contig1031:206157..210403 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2038
Hectar predicted targeting categoryother localisation
Exons7
Cds size969
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1031.48.1prot_A-nodosum_M_contig1031.48.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1031 206886..209157 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866400.0768948-UTR-A-nodosum_M_contig1031:206156..2064411680866400.0768948-UTR-A-nodosum_M_contig1031:206156..206441Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1031 206157..206441 +
1680866400.0859592-UTR-A-nodosum_M_contig1031:206860..2068851680866400.0859592-UTR-A-nodosum_M_contig1031:206860..206885Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1031 206861..206885 +
1680866400.3601415-UTR-A-nodosum_M_contig1031:209157..2092171680866400.3601415-UTR-A-nodosum_M_contig1031:209157..209217Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1031 209158..209217 +
1680866400.3681874-UTR-A-nodosum_M_contig1031:209704..2104031680866400.3681874-UTR-A-nodosum_M_contig1031:209704..210403Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1031 209705..210403 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866400.095612-CDS-A-nodosum_M_contig1031:206885..2070141680866400.095612-CDS-A-nodosum_M_contig1031:206885..207014Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1031 206886..207014 +
1680866400.159897-CDS-A-nodosum_M_contig1031:207256..2073111680866400.159897-CDS-A-nodosum_M_contig1031:207256..207311Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1031 207257..207311 +
1680866400.326806-CDS-A-nodosum_M_contig1031:207455..2077901680866400.326806-CDS-A-nodosum_M_contig1031:207455..207790Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1031 207456..207790 +
1680866400.3368094-CDS-A-nodosum_M_contig1031:208252..2086641680866400.3368094-CDS-A-nodosum_M_contig1031:208252..208664Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1031 208253..208664 +
1680866400.3504617-CDS-A-nodosum_M_contig1031:209119..2091571680866400.3504617-CDS-A-nodosum_M_contig1031:209119..209157Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1031 209120..209157 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1031.48.1

>prot_A-nodosum_M_contig1031.48.1 ID=prot_A-nodosum_M_contig1031.48.1|Name=mRNA_A-nodosum_M_contig1031.48.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=323bp
MAVGAPRARLFTASWPCFNGNLVDGESPTSKELPWLITDPYCKVTVRALP
RGSLQQTSLNSGVAREQEDTFPSVANIAAVADIDRGVGSEDRGVGVDDPI
FVESSLLMRNFNSISLSSDGRYSLTLSECHGFMADTTTTNTLNGEGFEGE
AYSDAPLLFLPLPHSIVFDVDDKIPNGRGVIGNFHLLPIAHAASTRPTAS
LLSSPTTEIFDALHFRPSVTSQPSVSVANDIPQSSGIRRATTPVGITVTF
GSGFMAGTVAGFVACRLLMGVRVSWWRGRGLWGKCREEISGTNETKEKSI
GGRCSDCTKVERGARRRTHKRR*
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mRNA from alignment at A-nodosum_M_contig1031:206157..210403+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1031.48.1 ID=mRNA_A-nodosum_M_contig1031.48.1|Name=mRNA_A-nodosum_M_contig1031.48.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4247bp|location=Sequence derived from alignment at A-nodosum_M_contig1031:206157..210403+ (Ascophyllum nodosum dioecious)
CATAACTGTGTTTTTACCGCCCTGTTTATTGCCTCGCCGACAGTGGCTGT
TTTTCAAGAGCTGAAGTAGGGGCATAGTTCACATCCGTTGTTGGGATTTT
CGTGCTGCGTGGTGCTTTCGATCGAAGTCAAGACCACGCAGTATCTGTTT
GTGTGAAGGGTCCTGAGCGGACGACAACCTGCCGAGAATTCTCTTCGCAC
ATCTTGGCCAAGGCTCGACAGAGAGCACACTCTGCTAGTGATCCCTGCAA
GAGCTTCAAAGCAATAGTGTGGTGTGTCTGATACTGTGCGTGTGGCAATG
TCCACTATAAAGCGTTAGCTTTGGAAGTGATGCATTTGATGTAAACGCCG
CAAATTCAAGAGGAGATACGTACAAGTATCTACATTATTATTAGGAATAA
CGACCAATTTAATACCATTTGTAGAGTCCTACTAATAATATAATATACCA
AATTCCTGCATTTGATTATAGCTCCATACTGGACAGTAGATGAAAACACG
TAGAGATGAAATTGGCATCATCGTCTGCATACATATACAGTACACCCCAA
TAGACTAAAAACAGGTATTATAGCAGTACTTAATGAATAATCCATGTGCG
CCTCCCGATGGGCATCTGGTGACTGACATGGTGTCACTACTTCATGCTAC
TTCCTCCGTACCTTTGACCTATAGAGATTTGTCTCCGTTCGGAACGGCGT
GTAGGAGGCTACTGCATTCTTCACCGAGCATGGCGGTTGGAGCACCGAGG
GCGAGGCTATTCACAGCAAGCTGGCCATGTTTCAATGGCAACCTCGTGGA
TGGCGAGAGCCCCACGAGCAAAGAACTTCCTTGGTTGATCACTGATCCAT
ATTGCAAGGTCAGAAGCGGTAAATATTATATCTGATTGGCGATGAACAAC
TTTGTCGTGGCAAAACTATATGTTGCGAACCGCGATGGCACTCGGAGAAC
CACCGCAAACCGCGATGCCCCCCACTTCTTGATGCGATACTATTATGCAG
TGATAGCAATTGAGCGAATTCCCTAATGTCCTTGCAAGTGGAACCTTTAC
TACGACGAGGGTTTCACGGTCATCTGCTTTGTCCCCGTGAGTATGCGCAG
GTGACAGTTCGGGCGCTTCCACGTGGGAGCTTGCAGCAAACCTCTTTGAA
CTCAGGTAAATAAATTGATGAACTCGGAGGCTTTTGTCCCTTGGTTTGTC
GGTGAATCTTCTGCTTGCAGTCACTTGCGTGATATTCTTGAGCTGCGTGG
TCCTCTTACCCGCTGCACCATCTCGCCCAACCTTACCCGTGAACGAAAGG
TGTTGCTAGAGAACAAGAAGACACATTTCCGTCCGTCGCCAACATTGCTG
CCGTGGCTGACATCGATCGTGGCGTGGGCAGTGAGGATCGCGGGGTTGGT
GTCGATGATCCAATTTTCGTCGAATCATCACTCCTCATGAGAAATTTCAA
CAGCATCTCTCTTTCCAGCGACGGGAGGTATAGTCTAACCCTGTCTGAGT
GTCATGGCTTCATGGCTGATACGACAACAACCAACACCCTGAATGGCGAG
GGTTTCGAAGGAGAAGCCTACTCGGATGCACCCCTCCTCTTTCTTCCTCT
TCCCCATTCCATCGTTTTCGATGTTGACGACAAGGTACGGAGACGACTTA
TCGCGCACAAACAACGGAGACGCGCAAGCTATTATCACTTATTTTTACTG
GCGAAGCTTGGTCCCCTGCTCTGAATGAGGAAGATGCAATCAGTGTGGGG
TGGATTGGCCGTTGCTTGACTAATCTTTTGAGGTAGCCTTTCCGAAACTA
GAAACTGTAGAAGGCTATTTAACTGGCCACTTACTTCGCCCGACGCATTG
ACCAATACACTAGCGGGCTTCAAGACTCTCAAAATCTCGAGGAGCCTAGG
ACGCAACATGTTGACATCGCGCTTGCAAGCCAAAAGCGCCTTTACATCAA
TGGATCGGTCCACCTGACTTGCCTACCGCCTTTGAATGCTCTCTTCCAAA
TATTGCATGCCCTGTTGATGGTACTCAAACATGGGACATCTCCATCGTGA
TTGGCGGTCAAACATGGGGGGTCCCTCTTCACGTCCATCACCGAAGATTC
CGAACGGAAGGGGAGTCATTGGCAATTTCCATCTGCTGCCGATTGCTCAC
GCGGCCTCAACACGCCCAACAGCGTCATTATTGTCCTCCCCCACCACCGA
GATATTTGATGCTTTGCACTTCCGGCCGTCGGTGACCTCACAGCCGTCAG
TATCTGTAGCAAATGACATACCACAATCAAGTGGCATTAGGCGCGCGACG
ACTCCAGTTGGAATAACCGTGACATTCGGAAGCGGTTTCATGGCTGGAAC
AGTCGCTGGATTTGTAGCTTGCCGCCTTTTGATGGGGGTTCGCGTGTCCT
GGTGGAGAGGAAGAGGGCTTTGGGGCAAATGCCGGGAGGAGATTAGCGGG
ACGAATGAAACAAAGGAAAAGTCGATCGGAGGCCGTTGCAGTGATTGCAC
TAAGGTAGGTGCTTCAGATACGGCTTTATAAGTGGGCCGCACGTGCCAAA
ATGAGCCTGAATCGCGCATCCCTAAAATGAAATCACGAAATATGCTTTGG
AACACGGCTCAGCTACGTCCCATTGCCATTAAATGGTTGCTCTTAGGTAT
CGTTTGGCCAAGTAAACATTTCAAGAATGGTGTGTTTTTACCCCTTTCCA
GTTGGATGCATATTTTACCTGCACGTAGTACCGTCGCCGACTTTCCCGTC
TGATACCTACGCAACAGATGATACCCAGTAACTCATTTACCACACGGCGC
GTCAAAATAAGACACGCAAGCAAGGGCGGGTTCCTCATGTAACCGTAGCA
ACTTTCATGAGTATCCTCTAAACAACCACCTTTCCTCTGGTTTCCCGAGA
ACATGTGTATTGCTGGACGATCTCTCTCTTCTACCTTACTCTATTTATTT
CGTGTCTACCCAGAGCGGGGCGCTCGTCGACGAACACACAAGCGACGATG
ACTCCGAGGATAGCGACGATATCCTCAATGGGAACGTACCGGATCCAGTG
GGATTACCTCGGTAGGAAGGCTGCCGTGGTCCGAAAACGACTCCGAGATT
TGTAGCACTATATTCAAGAGATTTGTCTTTAAACTCGGCAATACAAACGA
GCGGGATTGGAAACCATGTAAAGTAGTTTTTTTCGGGTTGGCAACCAATA
CGCCGAGTATGAGAAACAACAACAATAGCAACGATTTTTCTTTAAACTTC
TTTCAACTCCTATGAGACACCATGGATAGTAGCAGATAGAGGCTGGCCGT
GCTTGGCGCGGTTTCAGCAGTTGTTGATCATGTGTTTACAATATATATTG
TTTGATTATGTACAAACGAAACAAGAAATAAGAGGACCTCGACCGACGAG
CGATTGTACTTCAATACCGCCACCCCACCCTCTTCAGCTTTTATTTTTAT
CTTCCACATGCAATGCTACTATGGCGATTACTCTCATACCCATTCCATAT
CATTCCATACCATTCCATATCAATCCATGCCATTCCATACTCTGGTAGGA
ACGAAGAAGACTGGCGAGCTCTGTTCGACACCCTCTACCAGGATGAGAAG
GAGCAGACCACCACTACAGAGGCGATGGTGCCGGCTGGTTCTACGTCCAA
CTCATCACATGAGCCCCCCGCTACCTCTACAAATGACAATCCTTAGTGCG
GTAAAGGCAGCATGGACTGGTTTGCTCGCGATATTTTCCCAGGTCCATAC
CACTGACGAAGACGCAACCAATCGAAAGAAGATTGATCATATTCAGGGAG
ATTTACGCCAGCGATCGGACCATCGAGTGACAGGACAATTACTTCGAGGG
AGAAACCGCGTCGAAGTAGCTCATTGAGGGGCATAGACTGAATACCGTTT
TGATTGATAATGTTATGGCATCAGGTGGTTTGGTTTTTCATGAAGAACCC
AGTTACTAGCTGCTGTGTTTAATTTTTTACTGGATAGTCTTCTCGTCTCC
TACTCTTGAGAAAAAACGAGTAGAGATGAGATTGTCGATACTTCGGAATC
ATTTATATCATCGGTGCGTGCAAAGCGCCAACTCTGTGTACAAGTGGGTT
GAGCGTTGAGTTGTGCTTTACGTCTTGCCGCGTGCCGTCGGTCCGCGCGC
GCGTGCAAATGAGTGACCTGGAGAAGGCGCCAGACAAAGTAGTGTCACCA
AGCAAAGTTGTACAGTAAACAATTACCCTGGGATGTGATTTCCAATG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1031:206157..210403+

>mRNA_A-nodosum_M_contig1031.48.1 ID=mRNA_A-nodosum_M_contig1031.48.1|Name=mRNA_A-nodosum_M_contig1031.48.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=969bp|location=Sequence derived from alignment at A-nodosum_M_contig1031:206157..210403+ (Ascophyllum nodosum dioecious)
ATGGCGGTTGGAGCACCGAGGGCGAGGCTATTCACAGCAAGCTGGCCATG
TTTCAATGGCAACCTCGTGGATGGCGAGAGCCCCACGAGCAAAGAACTTC
CTTGGTTGATCACTGATCCATATTGCAAGGTGACAGTTCGGGCGCTTCCA
CGTGGGAGCTTGCAGCAAACCTCTTTGAACTCAGGTGTTGCTAGAGAACA
AGAAGACACATTTCCGTCCGTCGCCAACATTGCTGCCGTGGCTGACATCG
ATCGTGGCGTGGGCAGTGAGGATCGCGGGGTTGGTGTCGATGATCCAATT
TTCGTCGAATCATCACTCCTCATGAGAAATTTCAACAGCATCTCTCTTTC
CAGCGACGGGAGGTATAGTCTAACCCTGTCTGAGTGTCATGGCTTCATGG
CTGATACGACAACAACCAACACCCTGAATGGCGAGGGTTTCGAAGGAGAA
GCCTACTCGGATGCACCCCTCCTCTTTCTTCCTCTTCCCCATTCCATCGT
TTTCGATGTTGACGACAAGATTCCGAACGGAAGGGGAGTCATTGGCAATT
TCCATCTGCTGCCGATTGCTCACGCGGCCTCAACACGCCCAACAGCGTCA
TTATTGTCCTCCCCCACCACCGAGATATTTGATGCTTTGCACTTCCGGCC
GTCGGTGACCTCACAGCCGTCAGTATCTGTAGCAAATGACATACCACAAT
CAAGTGGCATTAGGCGCGCGACGACTCCAGTTGGAATAACCGTGACATTC
GGAAGCGGTTTCATGGCTGGAACAGTCGCTGGATTTGTAGCTTGCCGCCT
TTTGATGGGGGTTCGCGTGTCCTGGTGGAGAGGAAGAGGGCTTTGGGGCA
AATGCCGGGAGGAGATTAGCGGGACGAATGAAACAAAGGAAAAGTCGATC
GGAGGCCGTTGCAGTGATTGCACTAAGGTAGAGCGGGGCGCTCGTCGACG
AACACACAAGCGACGATGA
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