mRNA_A-nodosum_M_contig1031.47.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1031.47.1
Unique NamemRNA_A-nodosum_M_contig1031.47.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1031.47.1 vs. uniprot
Match: D7FID0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FID0_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 2.240e-12
Identity = 63/181 (34.81%), Postives = 96/181 (53.04%), Query Frame = 1 
Query:  217 SCWKRVEDLEDEEASLDQQLMKLEKTRRGERMEVLTIEXXCXXAEIRVIKADEETAQLDEQSRAMALTVQDATEDASVAVEAHISSILDGGGNGDPSYRAGGSTELTAVLRNIPFHEEKRQRMTSILQEHESKMRSRIAEVARSAAELRRSKKKREAESLSLGRETTVLREDVAAVADDCE 759
            SCW+RV +LEDEEASL+ +LM+LEK RRGER+E+L +E  C  AE+ +++A +E A LD +S+ +    +D  EDA+              GN   S+ A   T   A+               S L +   ++ S      ++    RR  K+R+AE L L RET +LR+++A +  + E
Sbjct:  357 SCWRRVGELEDEEASLNHRLMRLEKIRRGERLEILGLEQVCQAAEVAMLQAQDEGAHLDAKSQILENLAEDEAEDAAA-------------GNHGASFPASSGTHHDALP-------------ASSLPDSGGRVGS---NEGKAEPPTRRMAKQRDAERLPLERETAILRQELAEMTSEEE 508
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1031.47.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FID0_ECTSI2.240e-1234.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1031contigA-nodosum_M_contig1031:203792..206030 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size839
Hectar predicted targeting categoryother localisation
Exons7
Cds size837
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1031.47.1prot_A-nodosum_M_contig1031.47.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1031 203792..206030 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866399.991093-CDS-A-nodosum_M_contig1031:203791..2038691680866399.991093-CDS-A-nodosum_M_contig1031:203791..203869Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1031 203792..203869 -
1680866400.0023048-CDS-A-nodosum_M_contig1031:204017..2041141680866400.0023048-CDS-A-nodosum_M_contig1031:204017..204114Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1031 204018..204114 -
1680866400.0115225-CDS-A-nodosum_M_contig1031:204342..2044921680866400.0115225-CDS-A-nodosum_M_contig1031:204342..204492Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1031 204343..204492 -
1680866400.0217707-CDS-A-nodosum_M_contig1031:204751..2049481680866400.0217707-CDS-A-nodosum_M_contig1031:204751..204948Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1031 204752..204948 -
1680866400.0298576-CDS-A-nodosum_M_contig1031:205230..2053301680866400.0298576-CDS-A-nodosum_M_contig1031:205230..205330Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1031 205231..205330 -
1680866400.0379636-CDS-A-nodosum_M_contig1031:205550..2057101680866400.0379636-CDS-A-nodosum_M_contig1031:205550..205710Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1031 205551..205710 -
1680866400.0466692-CDS-A-nodosum_M_contig1031:205975..2060301680866400.0466692-CDS-A-nodosum_M_contig1031:205975..206030Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1031 205976..206030 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1031.47.1

>prot_A-nodosum_M_contig1031.47.1 ID=prot_A-nodosum_M_contig1031.47.1|Name=mRNA_A-nodosum_M_contig1031.47.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=279bp
CILAFFNGPALGRAKPLSGLYMDLSHSDEFRCPSFAPSRHDEGPQDTCFN
PGDRLQPSTLSERIELLDQETRSCWKRVEDLEDEEASLDQQLMKLEKTRR
GERMEVLTIEQECKSAEIRVIKADEETAQLDEQSRAMALTVQDATEDASV
AVEAHISSILDGGGNGDPSYRAGGSTELTAVLRNIPFHEEKRQRMTSILQ
EHESKMRSRIAEVARSAAELRRSKKKREAESLSLGRETTVLREDVAAVAD
DCEVEAGIVHARQAGEGLRRRLQHAHEKL
back to top

mRNA from alignment at A-nodosum_M_contig1031:203792..206030-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1031.47.1 ID=mRNA_A-nodosum_M_contig1031.47.1|Name=mRNA_A-nodosum_M_contig1031.47.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2239bp|location=Sequence derived from alignment at A-nodosum_M_contig1031:203792..206030- (Ascophyllum nodosum dioecious)
TGTATCCTCGCGTTTTTCAATGGTCCAGCGCTCGGAAGGGCGAAACCTCT
GAGTGGTGAGGATATCTGGGATAAAACTCGAAGCCCGAAAAAACTGTAGG
TCCCCATGGTCGCTTCGTTTGGCGGAATGTAGGGTGTGCCTTGAACGATG
TTTGTACTATCAGAGAGTTATGCTCTACAACGAACTGTAGAGTCTGAAAG
GCTCCGAGTCACGAATATGTTTCATCCAAACTGCTGATTTCCGTGACACG
AATGGCATGCCACATCAGAAACTCGTTATCATCGGAACGGGGGTGAATGC
GACGGCCGGTTCTTGTGCAGGTTTGTATATGGATCTCTCTCATTCGGACG
AGTTTCGATGTCCAAGCTTTGCGCCGTCTAGACATGATGAAGGTCCTCAA
GATACTTGTTTCAACCCCGGAGACAGGTTGCAGCCTTCCACTCTAAGCGA
GCGCATTGAACTCCTTGACCAGGAGACAAGGCACGTATTTTGTGGCAATT
TGGAGGCTTGACTTCCCAGAAAGACGCGTGTTGCCTCTTTCCTACCCACA
TCATATTTAGCATTTCTGGTGTTTTCCCTCTCGGTGCGTCTTGGTACGAT
GTCAGTGTACATTACAATTCTTACATCAATCACTTCTTATTTGGGTGTGC
GTGTGTGTTGTCATCCTATTTGGGTGATATTTTATTAATGAAAAGCGCAG
GTCGTGCTGGAAACGGGTTGAAGATCTGGAGGATGAAGAGGCGTCATTGG
ACCAGCAGCTCATGAAGCTCGAGAAGACTCGCCGTGGGGAGCGAATGGAG
GTCCACCTTTGTCGAGCGAATAAACTATTGTATGCCCTGAGGCGCCAAAC
CAACAGATCGATATCAAGTGTTGACTCTTTTCGTAGACTCCTGGGCGTGC
TGCCCCTGTACGATAACAATACTTGATGCCTTCACGCCAAAACCCTGGTA
AGTATAGAACTAATTTGAACGTTTTACAAGCACATTTCTCTGCCTTCGCC
TCCACTTTGCTGTGCTCCAGGCCCCTCGTGCTAGCTGACACAGACTACTG
TACTTGCACTTTGAAACACAAACAACCACCAGGTGCTTACAATTGAGCAG
GAGTGCAAATCAGCAGAAATCAGAGTTATCAAGGCTGATGAGGAGACTGC
TCAACTGGACGAGCAGTCTCGGGCAATGGCGTTAACTGTTCAGGACGCTA
CAGAAGACGCTTCGGTTGCCGTCGAAGCACATATATCATCTATATTGGAT
GGCGGCGGCAACGGAGACCCATCTTATAGGTATCCGGCTCAGAATTGTCC
TTGCACGTTGTGGAATTAGCACTCGCGTTTAGAACAGATTGAAGTTGGGC
CCTCAGGAGCGATGTGTTGGGACTGTGCCCTGAAATAATGTAACGTTAAG
GACCATGGCTGGATGGAAAAGACAGCCTACACCTGACGATACTTCTGAGG
TACTATCGAACGCTTCGCCATGGTGATGTTTCCGCTGAGACAGAAACATT
TTCTCTGTATTTCGGTTGGGCTTTATTTTCCGGAGCAGGGCTGGAGGTTC
CACGGAACTCACCGCTGTATTGAGAAATATTCCTTTCCACGAAGAAAAGC
GTCAACGAATGACTTCCATTCTTCAAGAGCACGAGAGCAAAATGCGGAGC
CGTATCGCAGAGGTAGCTCGCTCGGCTGCAGAGCTCAGGTAAAAGACTCC
GCGGAGGAATGGGCCCCGTGACCCCAATGCCGTAGAAACCCTTGGCTCCC
GAATCACTAAGTGCACGCCACAACGACATCGCGCAAAGAACCCAACATGG
AACTGAGCCAACTTAAAAAAAAAAATGTTTATTATGTTGAATAATGTTCG
GATTTCTAGTTTACTCATTGGAAAGCTTTACACGTGTATCATTGATTGAA
TGATTGAATAAAACAGGCGATCCAAGAAAAAAAGGGAAGCCGAAAGTTTA
TCCCTGGGGCGAGAGACGACCGTCTTGCGAGAAGACGTGGCAGCAGTGGC
GGATGACTGCGAGGTTTCAAGTGTTTTCCAGACACAACCACCACGCTACG
CTTGCCATCCTGCGCCAGATCCGGCCCATGTGTTAGGCCCTAGACTCTAC
AACTATACTATTCTAATCACTTATATCGACGACGTTCTCGTGTGGTCATG
CCCCGGCCCAGGTCGAGGCAGGTATAGTACACGCAAGGCAGGCTGGCGAA
GGCCTGAGGCGTAGGCTTCAACACGCCCACGAAAAGCTT
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1031:203792..206030-

>mRNA_A-nodosum_M_contig1031.47.1 ID=mRNA_A-nodosum_M_contig1031.47.1|Name=mRNA_A-nodosum_M_contig1031.47.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=837bp|location=Sequence derived from alignment at A-nodosum_M_contig1031:203792..206030- (Ascophyllum nodosum dioecious)
TGTATCCTCGCGTTTTTCAATGGTCCAGCGCTCGGAAGGGCGAAACCTCT
GAGTGGTTTGTATATGGATCTCTCTCATTCGGACGAGTTTCGATGTCCAA
GCTTTGCGCCGTCTAGACATGATGAAGGTCCTCAAGATACTTGTTTCAAC
CCCGGAGACAGGTTGCAGCCTTCCACTCTAAGCGAGCGCATTGAACTCCT
TGACCAGGAGACAAGGTCGTGCTGGAAACGGGTTGAAGATCTGGAGGATG
AAGAGGCGTCATTGGACCAGCAGCTCATGAAGCTCGAGAAGACTCGCCGT
GGGGAGCGAATGGAGGTGCTTACAATTGAGCAGGAGTGCAAATCAGCAGA
AATCAGAGTTATCAAGGCTGATGAGGAGACTGCTCAACTGGACGAGCAGT
CTCGGGCAATGGCGTTAACTGTTCAGGACGCTACAGAAGACGCTTCGGTT
GCCGTCGAAGCACATATATCATCTATATTGGATGGCGGCGGCAACGGAGA
CCCATCTTATAGGGCTGGAGGTTCCACGGAACTCACCGCTGTATTGAGAA
ATATTCCTTTCCACGAAGAAAAGCGTCAACGAATGACTTCCATTCTTCAA
GAGCACGAGAGCAAAATGCGGAGCCGTATCGCAGAGGTAGCTCGCTCGGC
TGCAGAGCTCAGGCGATCCAAGAAAAAAAGGGAAGCCGAAAGTTTATCCC
TGGGGCGAGAGACGACCGTCTTGCGAGAAGACGTGGCAGCAGTGGCGGAT
GACTGCGAGGTCGAGGCAGGTATAGTACACGCAAGGCAGGCTGGCGAAGG
CCTGAGGCGTAGGCTTCAACACGCCCACGAAAAGCTT
back to top