mRNA_A-nodosum_M_contig1031.12.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1031.12.1
Unique NamemRNA_A-nodosum_M_contig1031.12.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1031.12.1 vs. uniprot
Match: A0A183J4F1_9BILA (CYCLIN domain-containing protein n=1 Tax=Soboliphyme baturini TaxID=241478 RepID=A0A183J4F1_9BILA)

HSP 1 Score: 57.4 bits (137), Expect = 1.040e-7
Identity = 30/97 (30.93%), Postives = 51/97 (52.58%), Query Frame = 1
Query:   49 IFECGKHMEMKTLVMAAAATICQRYYAQRSLRDIPTYHVGSAALLIASKAEEFPRKMKEVLMAAYAVGYKTESDRYLNSQKYEADASKMASAERVLM 339
            I E G  + +  L M  A     R+YA  S    P   + +AAL +A+K EE PRK++ V+  ++A+ ++      + S KY  +A K+ + E +L+
Sbjct:   52 IQEMGSKLTLSQLCMNTALVFMHRFYAFHSFHRFPRSDIAAAALFLAAKVEECPRKLEYVVKVSHALQHRDNPGLDVKSDKYAEEAQKIVTYENILL 148          
BLAST of mRNA_A-nodosum_M_contig1031.12.1 vs. uniprot
Match: A0A6J2YR12_SITOR (cyclin-T1 n=1 Tax=Sitophilus oryzae TaxID=7048 RepID=A0A6J2YR12_SITOR)

HSP 1 Score: 56.6 bits (135), Expect = 6.070e-7
Identity = 31/98 (31.63%), Postives = 52/98 (53.06%), Query Frame = 1
Query:   46 FIFECGKHMEMKTLVMAAAATICQRYYAQRSLRDIPTYHVGSAALLIASKAEEFPRKMKEVLMAAYAVGYKTESDRYLNSQKYEADASKMASAERVLM 339
            FI + G+ +++  L +  A     R+Y   S  D P Y + +AAL +A+K EE PRK++ V+  A       +S   +NS++Y A +  +   E VL+
Sbjct:   42 FIQDMGQRLKVSQLCINTAIVYMHRFYVFHSFTDFPWYQMAAAALFLAAKVEEQPRKLEYVIRVANICKNPRDSAFDINSERYIAQSQDLVFNENVLL 139          
BLAST of mRNA_A-nodosum_M_contig1031.12.1 vs. uniprot
Match: A0A7S4MTZ4_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4MTZ4_9EUKA)

HSP 1 Score: 56.2 bits (134), Expect = 7.450e-7
Identity = 29/98 (29.59%), Postives = 51/98 (52.04%), Query Frame = 1
Query:   46 FIFECGKHMEMKTLVMAAAATICQRYYAQRSLRDIPTYHVGSAALLIASKAEEFPRKMKEVLMAAYAVGYKTESDRYLNSQKYEADASKMASAERVLM 339
            F+ ECG+ + +  L +A A     R+YA+ S      + V +  L +ASK EE P+K+K+V+M  Y   +  E      ++++     K+   ER+L+
Sbjct:   60 FLQECGQKLRLPQLSIATAIVFFHRFYARMSYEHYDRFTVATTCLFLASKVEETPKKLKDVVMETYKTQHNQEKAPEPETKEFFELKEKILVCERILL 157          
BLAST of mRNA_A-nodosum_M_contig1031.12.1 vs. uniprot
Match: A0A834M587_RHYFE (CYCLIN domain-containing protein n=1 Tax=Rhynchophorus ferrugineus TaxID=354439 RepID=A0A834M587_RHYFE)

HSP 1 Score: 56.2 bits (134), Expect = 8.280e-7
Identity = 30/98 (30.61%), Postives = 51/98 (52.04%), Query Frame = 1
Query:   46 FIFECGKHMEMKTLVMAAAATICQRYYAQRSLRDIPTYHVGSAALLIASKAEEFPRKMKEVLMAAYAVGYKTESDRYLNSQKYEADASKMASAERVLM 339
            FI + G+ +++  L +  A     R+Y   S  D P Y + +AAL +A+K EE PRK++ V+  A       +S   +NS++Y   +  +   E VL+
Sbjct:   42 FIQDMGQRLKVSQLCINTAIVYMHRFYVFHSFTDFPWYQMAAAALFLAAKVEEQPRKLEYVIRVANICKNPRDSSFDVNSERYATQSQDLVFNENVLL 139          
BLAST of mRNA_A-nodosum_M_contig1031.12.1 vs. uniprot
Match: A0A1Y1XDF7_9FUNG (CYCLIN domain-containing protein (Fragment) n=1 Tax=Anaeromyces robustus TaxID=1754192 RepID=A0A1Y1XDF7_9FUNG)

HSP 1 Score: 55.5 bits (132), Expect = 1.520e-6
Identity = 27/70 (38.57%), Postives = 43/70 (61.43%), Query Frame = 1
Query:   49 IFECGKHMEMKTLVMAAAATICQRYYAQRSLRDIP-TYHVGSAALLIASKAEEFPRKMKEVLMAAYAVGY 255
            ++E GK +      +++A T   R+Y Q  + D P T+ +G A LL+ASKAEE  +K+KE+L  AY + +
Sbjct:   52 MYETGKQLGFPYYTVSSAITYFHRFYEQNLIVDFPETWEIGVACLLVASKAEETVKKLKEILSTAYRIRF 121          
BLAST of mRNA_A-nodosum_M_contig1031.12.1 vs. uniprot
Match: A0A085MJU0_9BILA (CYCLIN domain-containing protein n=2 Tax=Trichuris suis TaxID=68888 RepID=A0A085MJU0_9BILA)

HSP 1 Score: 53.5 bits (127), Expect = 7.130e-6
Identity = 29/97 (29.90%), Postives = 51/97 (52.58%), Query Frame = 1
Query:   49 IFECGKHMEMKTLVMAAAATICQRYYAQRSLRDIPTYHVGSAALLIASKAEEFPRKMKEVLMAAYAVGYKTESDRYLNSQKYEADASKMASAERVLM 339
            I E G+ + +  L    A     R+Y   S    P + + +AAL +A+K EE PRK++ ++  ++A+ ++ ES     S KY  +  K+ + E VL+
Sbjct:   55 IQEVGQKLSLSQLCTNTAIVYMHRFYVFHSFCRFPKFDLAAAALFLAAKVEECPRKLEYLVKVSHALQHRGESSLDSRSDKYMQEVQKIITYENVLL 151          
BLAST of mRNA_A-nodosum_M_contig1031.12.1 vs. uniprot
Match: A0A1R4AC03_BABMR (Cyclin-L1-1 n=1 Tax=Babesia microti (strain RI) TaxID=1133968 RepID=A0A1R4AC03_BABMR)

HSP 1 Score: 53.1 bits (126), Expect = 9.000e-6
Identity = 24/68 (35.29%), Postives = 42/68 (61.76%), Query Frame = 1
Query:   49 IFECGKHMEMKTLVMAAAATICQRYYAQRSLRDIPTYHVGSAALLIASKAEEFPRKMKEVLMAAYAVG 252
            I++ G  + +K++ +A+A  I QR+Y +RSL D       +A   +A+K EE P+++ EV+M  Y +G
Sbjct:   36 IYQVGLKLFLKSVTIASAQAILQRFYYRRSLTDFDIRKTAAACTFLATKLEEDPKRLHEVIMTFYHIG 103          
BLAST of mRNA_A-nodosum_M_contig1031.12.1 vs. uniprot
Match: A0A7S3TKL7_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TKL7_9SPIT)

HSP 1 Score: 52.8 bits (125), Expect = 1.210e-5
Identity = 23/66 (34.85%), Postives = 42/66 (63.64%), Query Frame = 1
Query:   46 FIFECGKHMEMKTLVMAAAATICQRYYAQRSLRDIPTYHVGSAALLIASKAEEFPRKMKEVLMAAY 243
            FI + G+++ +  L +A A     R++A +S  +   +++ + AL +ASK EE PRK+K+V++ AY
Sbjct:   58 FIQDTGRNLRLPQLTIATAMVFYHRFFAFKSYEEHDRFNIATTALFLASKVEETPRKLKDVVIEAY 123          
BLAST of mRNA_A-nodosum_M_contig1031.12.1 vs. uniprot
Match: A0A7R8X2N1_9CRUS (Cyclin-Q n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R8X2N1_9CRUS)

HSP 1 Score: 52.0 bits (123), Expect = 1.710e-5
Identity = 22/63 (34.92%), Postives = 41/63 (65.08%), Query Frame = 1
Query:   43 KFIFECGKHMEMKTLVMAAAATICQRYYAQRSLRDIPTYHVGSAALLIASKAEEFPRKMKEVL 231
            KFIFECG+ +E+K+  +  AA +  R++ +  LRD   Y + +A L I+ K+E+   ++++V+
Sbjct:   16 KFIFECGRKLELKSHTICKAAAMYHRFFKEAHLRDYDPYVIAAACLFISGKSEDDRAQIRDVI 78          
BLAST of mRNA_A-nodosum_M_contig1031.12.1 vs. uniprot
Match: UPI00096B4FED (LOW QUALITY PROTEIN: cyclin-T1-like n=1 Tax=Aethina tumida TaxID=116153 RepID=UPI00096B4FED)

HSP 1 Score: 52.4 bits (124), Expect = 1.850e-5
Identity = 27/98 (27.55%), Postives = 52/98 (53.06%), Query Frame = 1
Query:   46 FIFECGKHMEMKTLVMAAAATICQRYYAQRSLRDIPTYHVGSAALLIASKAEEFPRKMKEVLMAAYAVGYKTESDRYLNSQKYEADASKMASAERVLM 339
            FI + G+ +++  L +  A     R+Y   S    P + + +AAL +A+K EE PRK++ V+ A +      ++   ++S++Y + A  +   E VL+
Sbjct:   42 FIQDMGQRLKVNQLCINTAIVYMHRFYVFHSFTQFPWHQISAAALFLAAKVEEQPRKLEYVIRAVHICRNPRDTSFDIHSERYLSQAQDLVFNENVLL 139          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1031.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A183J4F1_9BILA1.040e-730.93CYCLIN domain-containing protein n=1 Tax=Soboliphy... [more]
A0A6J2YR12_SITOR6.070e-731.63cyclin-T1 n=1 Tax=Sitophilus oryzae TaxID=7048 Rep... [more]
A0A7S4MTZ4_9EUKA7.450e-729.59Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A834M587_RHYFE8.280e-730.61CYCLIN domain-containing protein n=1 Tax=Rhynchoph... [more]
A0A1Y1XDF7_9FUNG1.520e-638.57CYCLIN domain-containing protein (Fragment) n=1 Ta... [more]
A0A085MJU0_9BILA7.130e-629.90CYCLIN domain-containing protein n=2 Tax=Trichuris... [more]
A0A1R4AC03_BABMR9.000e-635.29Cyclin-L1-1 n=1 Tax=Babesia microti (strain RI) Ta... [more]
A0A7S3TKL7_9SPIT1.210e-534.85Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A7R8X2N1_9CRUS1.710e-534.92Cyclin-Q n=1 Tax=Darwinula stevensoni TaxID=69355 ... [more]
UPI00096B4FED1.850e-527.55LOW QUALITY PROTEIN: cyclin-T1-like n=1 Tax=Aethin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1031contigA-nodosum_M_contig1031:18475..20003 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FIA6
Preferred namecit-1.2
PFAMsBTB,Cyclin_C,Cyclin_N
Model size344
Max annot lvl2759|Eukaryota
KEGG koko:K15188
KEGG Pathwayko05202,map05202
Hectar predicted targeting categoryother localisation
GOsGO:0000079,GO:0000307,GO:0001932,GO:0001934,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0006357,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010628,GO:0016538,GO:0019207,GO:0019219,GO:0019220,GO:0019222,GO:0019887,GO:0030234,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0032268,GO:0032270,GO:0032991,GO:0033674,GO:0042325,GO:0042327,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043549,GO:0044093,GO:0044424,GO:0044464,GO:0045737,GO:0045787,GO:0045859,GO:0045860,GO:0045893,GO:0045935,GO:0045937,GO:0045944,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051338,GO:0051347,GO:0051726,GO:0060255,GO:0061695,GO:0065007,GO:0065009,GO:0071900,GO:0071902,GO:0080090,GO:0098772,GO:1901407,GO:1901409,GO:1902494,GO:1902554,GO:1902680,GO:1902911,GO:1903506,GO:1903508,GO:1904029,GO:1904031,GO:1990234,GO:2000112,GO:2001141
Exons3
Evalue7.2e-13
EggNOG OGsCOG5333@1|root,KOG0834@2759|Eukaryota
Descriptionpositive regulation of phosphorylation of RNA polymerase II C-terminal domain
Cds size342
COG categoryDKL
BRITEko00000,ko00001,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866399.1296413-CDS-A-nodosum_M_contig1031:18474..185281680866399.1296413-CDS-A-nodosum_M_contig1031:18474..18528Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1031 18475..18528 -
1680866399.1401656-CDS-A-nodosum_M_contig1031:19387..195161680866399.1401656-CDS-A-nodosum_M_contig1031:19387..19516Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1031 19388..19516 -
1680866399.2075167-CDS-A-nodosum_M_contig1031:19844..200031680866399.2075167-CDS-A-nodosum_M_contig1031:19844..20003Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1031 19845..20003 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1031.12.1prot_A-nodosum_M_contig1031.12.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1031 18475..20003 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1031.12.1

>prot_A-nodosum_M_contig1031.12.1 ID=prot_A-nodosum_M_contig1031.12.1|Name=mRNA_A-nodosum_M_contig1031.12.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=114bp
RSRHDAKTKKHLLHKFIFECGKHMEMKTLVMAAAATICQRYYAQRSLRDI
PTYHVGSAALLIASKAEEFPRKMKEVLMAAYAVGYKTESDRYLNSQKYEA
DASKMASAERVLMC
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mRNA from alignment at A-nodosum_M_contig1031:18475..20003-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1031.12.1 ID=mRNA_A-nodosum_M_contig1031.12.1|Name=mRNA_A-nodosum_M_contig1031.12.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1529bp|location=Sequence derived from alignment at A-nodosum_M_contig1031:18475..20003- (Ascophyllum nodosum dioecious)
AGGTCGAGGCATGATGCCAAGACGAAGAAGCACCTTCTCCACAAATTCAT TTTCGAGTGTGGCAAGCACATGGAAATGAAGACTCTGGTAATGGCCGCGG CAGCGACAATTTGCCAGCGTTATTACGCCCAACGGTCCCTAAGGGATATC CCCACATATGTGAGCACCCGCGAACCCGCGCCAAGTTCACCGGCTCTGAG AGTTCCCTTGGTTTTGATATGCATGAAAAGTTTTTTTACTTGGAGCGTTT CTTATGGTTGCAAGGACGATAGCTCGAGAGCACCAAGATGTTTTGCCGCC GGTAGAGGAACTATGATAAGAGTTATGAGTGCCTCTCCCTCAATCTTGGT CCTTGGTCTCCGAACTATAGACTGATACTAAGTTTATATTAATACTTTCC GTTTACATTCCGTCTCTCTCGCCCCCATCCTCTCTACCTCGATGTGCCAT GCCCTACCTTACCGTACCATGCCGTTGCTATGAATAGCACGTGGGATCGG CGGCGCTGCTAATTGCGTCGAAGGCAGAGGAGTTCCCGAGGAAGATGAAG GAGGTCCTCATGGCGGCGTACGCCGTCGGGTACAAAACTGAAAGCGACAG ATACTTAAATTCGCAGGTTGGTCGAAAAACGATATTAATAGTCGCGCCAG AGTAGGCTGTTATAAATACTACTGTAGGCTGTCGCTCTGCACGCCTGGTG CTCTTCTCCACAAGTCCAGAAACACACATATATACATATATATATATATG TGTCGCTCAGCACGCGCCGTTTTTATTGAATGTTTTGAGTTGGATCGCGA CATGTATCTAATATGAACATCATCTCTGTGGGAACCGCTTCGATTTTCTC TGTGCAGTCTGTAGTTGGTTTAAATGAAAACTGGCGTGAAGTCGGTCCGG ATTCCCGCTCAGAGCTACGCGGCCGCTGTACTGTACTGTACGTAGTTTCA TTCAAGGGGGGGGGGGGTTGAAATTAATGGAGGATCGCGCTCGTGTACGC TCTTGTCCGCTCACGAGGGACTGTGGTTGCTCTGTGCTTTGTCGGCGGAT CCGTCTTCCCTCTTAGCGACGCCAATGTGTCATCAATGGTGTGTTGGTGT TTCATATCGTGTGCATGTTGTGTAGAGGTGGGTAAGAGAGATTACTCACT GTTATTTACAAGTCTCAAAGGAAGAAAGTAAGTGGAGGCCCACGCACACG ATCTTGAGGCCATGAAGCAACACAATCCTTATTTTGCGCTTGTGTCCGTA CCTCCTCCTTAACACCATACCGTACCAGACGCTTCTCGGAGGTGGCCGAA TACGAACTTCATTGATTTGTTCTGCTGACGTATTATACCAGAAACTCGCG CAAGTAACCTAACCCCCCAACAACCTCTAAACTAACCTCCCTTTATCGTT TTGTCAAACCCAACCCCGCTCACTCCCTACCCGATACTCCTTTGACCACC CTGACACCTTGACCAATCGTAACAGAAGTACGAGGCCGACGCCTCGAAAA TGGCCAGCGCCGAGCGGGTGCTGATGTGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1031:18475..20003-

>mRNA_A-nodosum_M_contig1031.12.1 ID=mRNA_A-nodosum_M_contig1031.12.1|Name=mRNA_A-nodosum_M_contig1031.12.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at A-nodosum_M_contig1031:18475..20003- (Ascophyllum nodosum dioecious)
AGGTCGAGGCATGATGCCAAGACGAAGAAGCACCTTCTCCACAAATTCAT
TTTCGAGTGTGGCAAGCACATGGAAATGAAGACTCTGGTAATGGCCGCGG
CAGCGACAATTTGCCAGCGTTATTACGCCCAACGGTCCCTAAGGGATATC
CCCACATATCACGTGGGATCGGCGGCGCTGCTAATTGCGTCGAAGGCAGA
GGAGTTCCCGAGGAAGATGAAGGAGGTCCTCATGGCGGCGTACGCCGTCG
GGTACAAAACTGAAAGCGACAGATACTTAAATTCGCAGAAGTACGAGGCC
GACGCCTCGAAAATGGCCAGCGCCGAGCGGGTGCTGATGTGC
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