mRNA_A-nodosum_M_contig103.37.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig103.37.1 vs. uniprot
Match: UPI00053F8DEF (ATP-dependent DNA helicase PIF1-like n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F8DEF) HSP 1 Score: 121 bits (304), Expect = 5.100e-27 Identity = 91/276 (32.97%), Postives = 135/276 (48.91%), Query Frame = 2
Query: 14 PVARGRRSCTRQFLPPSAAREKLYLP*RLAGSPSPCYQAGAQ-----RIPISRSPSTSARMRRASWTNVAILPSSSTVWTPPTCWSEAPMTYRYSHKVVERTLAGFMGNNLPWGGNKIIVMGGDFQQVIPVVRRGTRGQVFDAYLKRSPLWEMVTVLRFLINMRP----ALAGLLWQMRVGDGDEAQHGYGEVNLPGDF-LPVSGDVKTDVCLDEA--SVFSPSG-------RIIVVARNAHVRLLNAEILERFSWPGTPSVSIDTIGDPDITVLY 784
P G+ R L R ++ +P +G + G ++P+ S+S + S T + + SS +W EAPMT+RY + V+R+L MGN+LP+GG KIIV GGDF+QV+PVVR GTR Q+ DA L RSPLW ++VL+ NMR A L + +G+GDE + LP + +P D D +D+ ++ G R I+ N + +N +++ERF G S D++ D D LY
Sbjct: 48 PGGTGKTYLYRAILATIKGRGEIAIPTATSGIAATLLHQGRTSHSTFQLPLKPDSSSSCTFTKGSKTGILLKHSSVIIW------DEAPMTHRYQFEAVDRSLKDLMGNDLPFGG-KIIVFGGDFRQVLPVVRNGTRAQMIDASLIRSPLWNHISVLQLRENMRSRHDNGFANFL--LSIGNGDEPTISDDMIKLPSNMVIPTVADTSIDGLIDQIFPNLNEHIGDGNFMVERAIITPLNENADRINDKVIERFLGEGRTYYSFDSVPD-DTRNLY 313
BLAST of mRNA_A-nodosum_M_contig103.37.1 vs. uniprot
Match: UPI0009010F48 (uncharacterized protein LOC109135721 n=2 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI0009010F48) HSP 1 Score: 121 bits (304), Expect = 2.230e-26 Identity = 91/276 (32.97%), Postives = 135/276 (48.91%), Query Frame = 2
Query: 14 PVARGRRSCTRQFLPPSAAREKLYLP*RLAGSPSPCYQAGAQ-----RIPISRSPSTSARMRRASWTNVAILPSSSTVWTPPTCWSEAPMTYRYSHKVVERTLAGFMGNNLPWGGNKIIVMGGDFQQVIPVVRRGTRGQVFDAYLKRSPLWEMVTVLRFLINMRP----ALAGLLWQMRVGDGDEAQHGYGEVNLPGDF-LPVSGDVKTDVCLDEA--SVFSPSG-------RIIVVARNAHVRLLNAEILERFSWPGTPSVSIDTIGDPDITVLY 784
P G+ R L R ++ +P +G + G ++P+ S+S + S T + + SS +W EAPMT+RY + V+R+L MGN+LP+GG KIIV GGDF+QV+PVVR GTR Q+ DA L RSPLW ++VL+ NMR A L + +G+GDE + LP + +P D D +D+ ++ G R I+ N + +N +++ERF G S D++ D D LY
Sbjct: 1086 PGGTGKTYLYRAILATIKGRGEIAIPTATSGIAATLLHQGRTSHSTFQLPLKPDSSSSCTFTKGSKTGILLKHSSVIIW------DEAPMTHRYQFEAVDRSLKDLMGNDLPFGG-KIIVFGGDFRQVLPVVRNGTRAQMIDASLIRSPLWNHISVLQLRENMRSRHDNGFANFL--LSIGNGDEPTISDDMIKLPSNMVIPTVADTSIDGLIDQIFPNLNEHIGDGNFMVERAIITPLNENADRINDKVIERFLGEGRTYYSFDSVPD-DTRNLY 1351
BLAST of mRNA_A-nodosum_M_contig103.37.1 vs. uniprot
Match: UPI000B8B39A8 (ATP-dependent DNA helicase PIF1-like n=2 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8B39A8) HSP 1 Score: 112 bits (279), Expect = 2.950e-23 Identity = 84/267 (31.46%), Postives = 129/267 (48.31%), Query Frame = 2
Query: 14 PVARGRRSCTRQFLPPSAAREKLYLP*RLAGSPSPCYQAGAQ-----RIPISRSPSTSARMRRASWTNVAILPSSSTVWTPPTCWSEAPMTYRYSHKVVERTLAGFMGNNLPWGGNKIIVMGGDFQQVIPVVRRGTRGQVFDAYLKRSPLWEMVTVLRFLINMRP----ALAGLLWQMRVGDGDEAQHGYGEVNLP-GDFLPVSGDVKTDVCLDEA--SVFSPSG-------RIIVVARNAHVRLLNAEILERFSWPGTPSVSIDTI 757
P G+ R L +R ++ +P +G + G ++P++ S++ + S T + + SS VW EAPMT+RY + V+R+L MGN+LP+GG KIIV GGDF+QV+PVVR GTR Q+ DA RSP+W + +L NMR A L + VG+G+E + LP G +P D + +D+ S+ G R I+ N +N +++E+F G S D++
Sbjct: 291 PGGTGKTFLYRALLATVKSRGEIAIPTATSGIAATLLHQGRTSHSTFQLPLNPDSSSTCSFTKRSKTAILLKNSSIIVW------DEAPMTHRYQFEAVDRSLKDLMGNDLPFGG-KIIVFGGDFRQVLPVVRNGTRAQMIDASFVRSPMWRHIRILHLRENMRSIDDNGFANFL--LSVGNGNEPTVSDQMIRLPTGMIIPTVADSSIEALIDQVFPSLSEHVGDGNFIVERAIITPLNEDADRINNKVVEKFLGEGKTYYSFDSV 548
BLAST of mRNA_A-nodosum_M_contig103.37.1 vs. uniprot
Match: UPI00053F4E4A (uncharacterized protein LOC104883934 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F4E4A) HSP 1 Score: 110 bits (276), Expect = 9.660e-23 Identity = 70/183 (38.25%), Postives = 101/183 (55.19%), Query Frame = 2
Query: 251 WSEAPMTYRYSHKVVERTLAGFMGNNLPWGGNKIIVMGGDFQQVIPVVRRGTRGQVFDAYLKRSPLWEMVTVLRFLINMRP----ALAGLLWQMRVGDGDEAQHGYGEVNLPGDF-LPVSGDVKTDVCLDEA----SVFSPSG-----RIIVVARNAHVRLLNAEILERFSWPGTPSVSIDTI 757
W EAPMT+RY + V+R+L M N+LP+GG KIIV GGDF+QV+PVVR GTR Q+ DA +SP+W V++L NMR A A L + +G+GDE + LP +P + DV ++ +D+ S G R I+ N +N +++E+F G SID++
Sbjct: 1194 WDEAPMTHRYHFEAVDRSLKDLMENDLPFGG-KIIVFGGDFRQVLPVVRNGTRAQMIDASFVKSPIWRHVSILHLRENMRTRDDSAFATRL--LSIGNGDEPTVSDHMIKLPNHMVIPSTDDVSIEMLIDQVFPNLSQHVGEGKYMVERAIITPLNEDADKINDKVVEKFLGEGKTYYSIDSV 1373
BLAST of mRNA_A-nodosum_M_contig103.37.1 vs. uniprot
Match: UPI000B8B69EB (uncharacterized protein LOC110780336 n=1 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8B69EB) HSP 1 Score: 109 bits (273), Expect = 2.250e-22 Identity = 69/183 (37.70%), Postives = 98/183 (53.55%), Query Frame = 2
Query: 251 WSEAPMTYRYSHKVVERTLAGFMGNNLPWGGNKIIVMGGDFQQVIPVVRRGTRGQVFDAYLKRSPLWEMVTVLRFLINMRP----ALAGLLWQMRVGDGDEAQHGYGEVNLP-GDFLPVSGDVKTDVCLDEA--SVFSPSG-------RIIVVARNAHVRLLNAEILERFSWPGTPSVSIDTI 757
W EAPMT+RY + V+R+L MGN+LP+GG KIIV GGDF+QV+PVVR GTR Q+ DA RSP+W + +LR NMR A L + VG+G+E + LP +P D + +D+ S+ G R I+ N +N +++E+F G S D++
Sbjct: 640 WDEAPMTHRYQFEAVDRSLKDLMGNDLPFGG-KIIVFGGDFRQVLPVVRNGTRAQMIDASFFRSPMWRHIRILRLRENMRSIDDNGFANFL--LSVGNGNEPTVSDQMIRLPTAMIIPTVADSSIEALIDQIFPSLSEHVGDGNFIVERAIITPLNEDADRINNKVVEKFLGEGKTYYSFDSV 819
BLAST of mRNA_A-nodosum_M_contig103.37.1 vs. uniprot
Match: UPI000B8AD2F7 (uncharacterized protein LOC110799600 n=5 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8AD2F7) HSP 1 Score: 109 bits (273), Expect = 2.480e-22 Identity = 83/267 (31.09%), Postives = 129/267 (48.31%), Query Frame = 2
Query: 14 PVARGRRSCTRQFLPPSAAREKLYLP*RLAGSPSPCYQAGAQ-----RIPISRSPSTSARMRRASWTNVAILPSSSTVWTPPTCWSEAPMTYRYSHKVVERTLAGFMGNNLPWGGNKIIVMGGDFQQVIPVVRRGTRGQVFDAYLKRSPLWEMVTVLRFLINMRP----ALAGLLWQMRVGDGDEAQHGYGEVNLP-GDFLPVSGDVKTDVCLDEA--SVFSPSG-------RIIVVARNAHVRLLNAEILERFSWPGTPSVSIDTI 757
P G+ R L +R ++ +P +G + G ++P++ S++ + S T + + S+ VW EAPMT+RY + V+R+L MGN+LP+GG KIIV GGDF+QV+PVVR GTR Q+ DA RSP+W + +LR NMR A L + VG+G+E + LP +P D + +D+ S+ G R I+ N +N +++E+F G S D++
Sbjct: 1148 PGGTGKTFLYRALLATVKSRGEIAIPTATSGIAATLLHQGRTSHSTFQLPLNPDSSSTCSFTKRSKTAILLKNSAIIVW------DEAPMTHRYQFEAVDRSLKDLMGNDLPFGG-KIIVFGGDFRQVLPVVRNGTRAQMIDASFVRSPMWRHIRILRLRENMRSIDDNGFANFL--LSVGNGNEPTVSDQMIRLPTAMIMPTVADSTIEALIDQIFPSLSEHVGDGNFIVERAIITPLNEDADRINNKVVEKFLGEGKTYYSFDSV 1405
BLAST of mRNA_A-nodosum_M_contig103.37.1 vs. uniprot
Match: UPI00053FEE25 (uncharacterized protein LOC104903349 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053FEE25) HSP 1 Score: 108 bits (271), Expect = 3.480e-22 Identity = 69/183 (37.70%), Postives = 102/183 (55.74%), Query Frame = 2
Query: 251 WSEAPMTYRYSHKVVERTLAGFMGNNLPWGGNKIIVMGGDFQQVIPVVRRGTRGQVFDAYLKRSPLWEMVTVLRFLINMRP----ALAGLLWQMRVGDGDEAQHGYGEVNLPGDF-LPVSGDVKTDVCLDE--ASVFSPSG-------RIIVVARNAHVRLLNAEILERFSWPGTPSVSIDTI 757
W EAPMT+RY + V+R+L M N LP+GG KIIV GGDF+QV+PVVR GTR Q+ DA +SP+W V++L NMR A A L + +G+GDE + LP +P + DV ++ +D+ +++ G R I+ N +N +++E+F G SID++
Sbjct: 478 WDEAPMTHRYHFEAVDRSLKYLMENELPFGG-KIIVFGGDFRQVLPVVRNGTRAQMIDASFVKSPIWRHVSILHLRENMRTRDDSAFATRL--LSIGNGDEPTVSDHMIKLPKHMVIPSTDDVSIEMLIDQDFSNLSQHVGEGKYMVERAIITPLNEDADKINDKVVEKFLGEGKTYYSIDSV 657
BLAST of mRNA_A-nodosum_M_contig103.37.1 vs. uniprot
Match: UPI000D62A1C5 (ATP-dependent DNA helicase PIF1-like n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=UPI000D62A1C5) HSP 1 Score: 106 bits (265), Expect = 7.150e-22 Identity = 69/194 (35.57%), Postives = 100/194 (51.55%), Query Frame = 2
Query: 251 WSEAPMTYRYSHKVVERTLAGFMGNNLPWGGNKIIVMGGDFQQVIPVVRRGTRGQVFDAYLKRSPLWEMVTVLRFLINMR----PALAGLLWQMRVGDGDEAQHGYGEVNLPGDFLPVSGD-----------VKTDVCLDEASVFSPSGRIIVVARNAHVRLLNAEILERFSWPGTPSVSIDTIGDPDITVLYP 787
W EA M R + + ++RT+ G LP+GG KI+VMGGDF+QV+PVVRRGTR Q+ D+ L+ SPLW + +R +NMR P + L +RVGDGDE + +P D D + + ++EA R I+ +N +V +N ++++RF S D D DI YP
Sbjct: 89 WDEASMAKRQTVEALDRTMQDITGVTLPFGG-KIMVMGGDFRQVLPVVRRGTRAQIVDSSLRMSPLWSSIKKIRLTLNMRARSDPWFSDFL--LRVGDGDEEMMEESFIRIPDDMAIAYADKDKSKHDLIDAIFPSLQINEADSNYIVSRAILSTKNENVDEINDQLIDRFCGDEKVYYSFDEAED-DINNFYP 278
BLAST of mRNA_A-nodosum_M_contig103.37.1 vs. uniprot
Match: UPI00053FF0F2 (uncharacterized protein LOC104901240 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053FF0F2) HSP 1 Score: 106 bits (264), Expect = 2.330e-21 Identity = 68/183 (37.16%), Postives = 98/183 (53.55%), Query Frame = 2
Query: 251 WSEAPMTYRYSHKVVERTLAGFMGNNLPWGGNKIIVMGGDFQQVIPVVRRGTRGQVFDAYLKRSPLWEMVTVLRFLINMRP----ALAGLLWQMRVGDGDEAQHGYGEVNLPGDF-LPVSGDVKTDVCLDEA----SVFSPSG-----RIIVVARNAHVRLLNAEILERFSWPGTPSVSIDTI 757
W EAPMT+RY + V+R+L M N+LP+GG KIIV GGDF+QV+PVVR GTR Q+ DA +SP+W V +L NMR A L+ +G+GDE + LP +P DV ++ +D+ S G + I+ N +N +++E+F G SID++
Sbjct: 286 WDEAPMTHRYQFEAVDRSLRDLMENDLPFGG-KIIVFGGDFRQVLPVVRNGTRTQMIDASFVKSPIWRHVNILHLRENMRSRDDNTFATRLFS--IGNGDEPTVSDQMIKLPNHMVIPSIDDVSIEMLIDQVFPNLSQHVGEGNYMVDKAIITPLNEDADKINDKVVEKFLGEGKTYYSIDSV 465
BLAST of mRNA_A-nodosum_M_contig103.37.1 vs. uniprot
Match: C6JRY2_SORBI (ATP-dependent DNA helicase n=1 Tax=Sorghum bicolor TaxID=4558 RepID=C6JRY2_SORBI) HSP 1 Score: 105 bits (262), Expect = 2.870e-21 Identity = 75/186 (40.32%), Postives = 99/186 (53.23%), Query Frame = 2
Query: 251 WSEAPMTYRYSHKVVERTLAGFMGNNLPWGGNKIIVMGGDFQQVIPVVRRGTRGQVFDAYLKRSPLWEMVTVLRFLINMRPALAGLLWQ--MRVGDGDEAQHGYGEVNLPGDFLPVSGDVKTDVCLDEA--SVFSP-----------SGRIIVVARNAHVRLLNAEILERFSWPGTPSVSIDTIGD 763
W E MT R + ++R+L M +LP+GG K++V GGDF+QV+PVV RGTR QV DA L+RS LW+ + +R NMR Q +R+G+G E G V LP D V G TDV ++ SVF SGR I+ +N HV LNA ++ERF S DT+ D
Sbjct: 320 WDEVAMTKRQCVETLDRSLQDIMECSLPFGG-KVMVFGGDFRQVLPVVPRGTRAQVTDATLQRSYLWDKIKKIRLSQNMRAQSDPWFSQYLLRIGNGTEETIGDDYVRLPVDI--VIGYTNTDVAVNTLIFSVFPSLGEHATSAAYMSGRAILSTKNEHVDRLNAMMIERFPSEEKVYHSFDTVVD 502 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig103.37.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig103.37.1 >prot_A-nodosum_M_contig103.37.1 ID=prot_A-nodosum_M_contig103.37.1|Name=mRNA_A-nodosum_M_contig103.37.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=211bp MRRASWTNVAILPSSSTVWTPPTCWSEAPMTYRYSHKVVERTLAGFMGNNback to top mRNA from alignment at A-nodosum_M_contig103:391982..393134+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig103.37.1 ID=mRNA_A-nodosum_M_contig103.37.1|Name=mRNA_A-nodosum_M_contig103.37.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1153bp|location=Sequence derived from alignment at A-nodosum_M_contig103:391982..393134+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig103:391982..393134+ >mRNA_A-nodosum_M_contig103.37.1 ID=mRNA_A-nodosum_M_contig103.37.1|Name=mRNA_A-nodosum_M_contig103.37.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=633bp|location=Sequence derived from alignment at A-nodosum_M_contig103:391982..393134+ (Ascophyllum nodosum dioecious)back to top |