mRNA_A-nodosum_M_contig103.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig103.3.1
Unique NamemRNA_A-nodosum_M_contig103.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig103.3.1 vs. uniprot
Match: A0A6H5L3L2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3L2_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 2.140e-30
Identity = 198/553 (35.80%), Postives = 235/553 (42.50%), Query Frame = 1 
Query:  202 GSDLGSAGSPQYGSKR-GSGLLGGDIWT-AFPPQDLTLSPQAR--SDHNEDV----ERYTSEHSLFGSSPWRGALGDGGGRGERVRNGQTSF---------------------------------GTPVPGHHEAPRSSTPPGIGTIVAGTIAGGDGGGRSLASGEVGGG-QVHPHLDELHDGGRNRSFEQRASPEGRGAMGYIHSPFQVSPSQQRRHAQQRQQXQYQKPQGFT-------QSSVHRREASTGSSHAARSPP-----FENSIPGEPPSFSGGIPESPSTAAPRSSGIGGLPR------------------ETSPRQAGDHQRRYSLPGPPQANAGTAPRPNHAQLPAYSSHGPQQGSPPLQPQRHRPDHQSFG---RRSSSPAAVSLGGPGDGGGYGGGDSPVLLGVTSHRSPPSTLPTAFSXXXXXXXXXXXXXXXASSIFSSNVSGHSNXXXXXXXXXXXXXGGGSDLGSVGGRXXXXXXXXXXXXXSGNVAVPWRTPPLGSSKADFSGVEEGSSGVAGLYAAAHGSTGGALGWGAVMGTG 1635
            GSDLGSAGSPQ+GS R GSGLLGG I++ AF  QDL LSPQ    SDH +D     ER+   HSLFGS+ WRG LG  G                                              G P      + RSS+PP      AG    G  GG +  +G VGGG +   H  +     R  SFE   S +    +GY+ +PFQ  PS+Q         X                 +S HRR+ S+GS  ++RS P       N+   EPP FSG IP SPST+AP S G GG                       SP QAG      SL G          +          SH   Q SPPLQ  R R +   +G   RRSSSP                GD+ V  G T             S XXXXXXXXXXX   +S+IF SNVSGHS+             GG S+LG+                 SGN    WRTPPLGS K D  G E G+         AHGSTGGALGWG++MG+G
Sbjct: 1228 GSDLGSAGSPQFGSSRNGSGLLGGGIFSGAFHAQDLALSPQQAPPSDHKDDGGSGGERFA--HSLFGSASWRGPLGSSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVP------SSRSSSPP------AGL---GGSGGMARTNGNVGGGLEGSEHRQQRQGHHRRASFEHPPSTDE--GLGYLDNPFQ--PSRQXXXXXXXXXXXXXXXXXXXXXYGVALSASSHRRQGSSGSIRSSRSSPPTAFDHRNTNVSEPPGFSGVIPGSPSTSAPGSGGRGGSGALQWGSXXXXXXXXXFRADNVSPGQAGSXXXXXSLSG----------QXXXXXXXXQVSHS-SQVSPPLQAMRQRHEQPVYGSCSRRSSSP----------------GDASVPGGRTFS-----------SAXXXXXXXXXXXPDDSSTIFGSNVSGHSSYSGFSAMSSMHAFGG-SELGNSSSGGMAGGNAPADGSSSGNNLATWRTPPLGSQKGD-PGDESGNP-------PAHGSTGGALGWGSIMGSG 1712
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BLAST of mRNA_A-nodosum_M_contig103.3.1 vs. uniprot
Match: D7FXG3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXG3_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 1.930e-7
Identity = 50/108 (46.30%), Postives = 58/108 (53.70%), Query Frame = 1 
Query: 1318 ASSIFSSNVSGHSNXXXXXXXXXXXXXGGGSDLG--SVGGRXXXXXXXXXXXXXSGNVAVPWRTPPLGSSKADFSGVEEGSSGVAGLYAAAHGSTGGALGWGAVMGTG 1635
            +S+IF SNVSGHS+             GG S+LG  S GG           XXX  N    WRTPPLGS K D  G E G+         AHGSTGGALGWG++MG+G
Sbjct:   56 SSTIFGSNVSGHSSYSGFSAMSSMHAFGG-SELGNSSGGGGMAGVNAAADGXXXXNNNPATWRTPPLGSQKGD-PGDESGNP-------PAHGSTGGALGWGSIMGSG 154
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig103.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L3L2_9PHAE2.140e-3035.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXG3_ECTSI1.930e-746.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig103contigA-nodosum_M_contig103:126433..130026 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1960
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_003120.1
Cds size1653
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig103.3.1prot_A-nodosum_M_contig103.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig103 126722..130008 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866393.9683478-UTR-A-nodosum_M_contig103:126432..1267211680866393.9683478-UTR-A-nodosum_M_contig103:126432..126721Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig103 126433..126721 -
1680866394.016584-UTR-A-nodosum_M_contig103:130008..1300261680866394.016584-UTR-A-nodosum_M_contig103:130008..130026Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig103 130009..130026 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866393.977865-CDS-A-nodosum_M_contig103:126721..1274291680866393.977865-CDS-A-nodosum_M_contig103:126721..127429Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig103 126722..127429 -
1680866393.9890013-CDS-A-nodosum_M_contig103:128239..1286331680866393.9890013-CDS-A-nodosum_M_contig103:128239..128633Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig103 128240..128633 -
1680866393.9970937-CDS-A-nodosum_M_contig103:129173..1294031680866393.9970937-CDS-A-nodosum_M_contig103:129173..129403Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig103 129174..129403 -
1680866394.0051925-CDS-A-nodosum_M_contig103:129687..1300081680866394.0051925-CDS-A-nodosum_M_contig103:129687..130008Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig103 129688..130008 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig103.3.1

>prot_A-nodosum_M_contig103.3.1 ID=prot_A-nodosum_M_contig103.3.1|Name=mRNA_A-nodosum_M_contig103.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=551bp
MDQRGSFRSEPASGDDGEVPAFTTPSFGQSNRRRSTGGGGGPVVIVGGIR
GDDGGGFHGRGGSDLGSAGSPQYGSKRGSGLLGGDIWTAFPPQDLTLSPQ
ARSDHNEDVERYTSEHSLFGSSPWRGALGDGGGRGERVRNGQTSFGTPVP
GHHEAPRSSTPPGIGTIVAGTIAGGDGGGRSLASGEVGGGQVHPHLDELH
DGGRNRSFEQRASPEGRGAMGYIHSPFQVSPSQQRRHAQQRQQQQYQKPQ
GFTQSSVHRREASTGSSHAARSPPFENSIPGEPPSFSGGIPESPSTAAPR
SSGIGGLPRETSPRQAGDHQRRYSLPGPPQANAGTAPRPNHAQLPAYSSH
GPQQGSPPLQPQRHRPDHQSFGRRSSSPAAVSLGGPGDGGGYGGGDSPVL
LGVTSHRSPPSTLPTAFSSAANNHSNNNHNHDDASSIFSSNVSGHSNYSG
FSGYSAFNAFGGGSDLGSVGGRDGGREGGGGGNGGSGNVAVPWRTPPLGS
SKADFSGVEEGSSGVAGLYAAAHGSTGGALGWGAVMGTGGGGGGRGADQR
*
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mRNA from alignment at A-nodosum_M_contig103:126433..130026-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig103.3.1 ID=mRNA_A-nodosum_M_contig103.3.1|Name=mRNA_A-nodosum_M_contig103.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3594bp|location=Sequence derived from alignment at A-nodosum_M_contig103:126433..130026- (Ascophyllum nodosum dioecious)
ATCTCGACGGCGGCCGAAATGGACCAGCGTGGCAGCTTCCGCAGCGAACC
CGCGTCGGGCGACGACGGCGAGGTTCCCGCGTTTACCACCCCGTCGTTCG
GGCAGTCTAACAGGCGGAGGAGTACCGGAGGAGGTGGCGGACCAGTGGTG
ATCGTTGGAGGTATTCGAGGGGATGACGGCGGGGGTTTCCACGGTAGAGG
TGGTTCTGATCTTGGGTCTGCGGGATCACCCCAGTACGGGTCGAAGCGCG
GAAGCGGGCTTCTCGGAGGAGACATCTGGACGGCTTTCCCGCCCCAGGAT
CTGACGCTTTCGCCTCAAGCCCGGTCCGACCACAACGAGGTGGGGCTGTC
CCATTCCCCCGAGTTCTCAAAATTGTACTAATACCCAATACCTTTGTTTT
TGTTAACTCTCTCGGGTGATTAGGTTTGATCTGTGGTGTTAGGTTTATTA
ATAGTTGGCGGGACCTATCGAGTCTTGAATGCTGGGAATTTCTGGTGAGA
TACGCTGTGGTGATACGTCCCTACTCCAAATCAATCATTCGACCAGCGCT
GGAAAAGTTCATTGGCAGTGTTGGTGACGAAGCGAACGTGCCCTCTCGGC
TTTGACTTATATTATTTTGGCAGGACGTAGAGCGGTATACGTCGGAGCAC
AGCCTGTTCGGGTCATCGCCATGGAGGGGAGCACTAGGCGACGGCGGCGG
AAGAGGTGAAAGAGTGCGCAACGGCCAAACGTCGTTCGGTACGCCGGTTC
CAGGTCATCACGAAGCCCCCCGCTCGTCCACTCCGCCTGGCATAGGCACC
ATAGTTGCGGGAACGATCGCTGGGGGGGACGGCGGCGGAAGGAGTCTCGC
GAGGTGCGAACGGTTCTGCGCGATATTCTTGGGACGTATTCGTCGTGCGA
GCTTATTTTACCGAGAAATTTTACCGTCACGCGTACTCGTGGTTGCGTGT
GTGTGTCAAGCAGTGCGCCCCACACGTTCGAAAAAGAGAAAAGCCGTCCC
ACGACCTCGTTCCGTTCCGTGGTTATTTATCCGGCCCCCTTACGGTTGGT
CGCCGCTCCTGTGTATGTGAAGTGATGCAAGGCACGTTCGACACAGGTAA
AAGAAAGTCGTCCCACGACTTCGTTCCGCCCCACGACTCCGCCCCACAAC
CTCGTTCCGTCCCGTGGTTATTATTCGGCTCTTTTTCGAGTGAACATTTA
CATTCACACCCATGGCTTCGTGTTCTGTCGAAAGCGCCGCCCCTCGAGGG
GCCGTAATTTCACCCTCGAAAAACTTAGAACGAGTGATGTTTATTTATTT
TCACCAAGTAAGATGATGATTACTTTCCTTCCTTCCTCCCATCTCTTGTC
CTCCATCACCTTTGTTGTCTCGACTGGACGTGGGTCTCATCAGTGGTGAG
GTAGGCGGGGGCCAAGTGCACCCGCATCTCGACGAGCTTCACGATGGCGG
CCGGAACAGGTCTTTCGAGCAGCGCGCCTCTCCGGAGGGAAGGGGAGCTA
TGGGGTACATTCACAGCCCCTTCCAGGTGTCTCCCTCGCAGCAGCGGCGG
CACGCTCAACAGCGGCAGCAGCAGCAGTATCAGAAGCCTCAGGGGTTTAC
CCAGTCTTCTGTGCACCGGCGCGAAGCGTCGACGGGATCTTCACATGCTG
CTCGATCTCCGCCGTTCGAGAACTCCATCCCCGGCGAACCTCCCAGTTTC
TCGGGGGGAATCCCGGAGTCTCCCAGCACGGCGGCGCCTCGCAGCAGCGG
CATCGGGGGACTGCCTCGGGAGACTTCTCCGAGACAGGTGACGATCTGTT
TTTTTTAACTGTGGAGGCGTTTTTTAAGGCAGGGGTGACATCACTATTTT
TTTTATTTTTTTTTCAACACTAGAAGAGGCAAAACAACAATCTTTCATGC
TGTCGATACGAAATCAAACCCTTAGTAATATGTAAGAGTTCGTAAAAGTC
CCCGTGAGTTTGACGGGTTTAGGCAGATTTCCAATGACATGTTTCACGAC
TAAGACCCCATGCAATGAGAGAAGTGAAAAGCGATGCTGTACGATCGAAA
CCCTGGATAATGCCAGTGTAATTTATTGCCGTGATATTGTAAGGAATAAT
GAATGCTAACGCCCTCCCCCCTAATAAACGCCCCCTTGCCCCATGGACAG
GCCGCAGATTCTCCCATCACTCTTTTAAACGTTAGCACACCGCTGTTTCA
ATGATATTATGATGAAAATTAAATAATGCGACGCTGAGAAGATCTCATCG
GCATGTGGGGATCTTCTTTTTCTTCTTTTTTCCCTCGACCGTAGTGCTGC
CCTCCGTTTTTTTAGCGAAATAGCCGTGTACGGTAGGTGCACTACGAAAT
ACTTGTGCGCGCGCTTCGTGCCCTCCAGTCGGGTTTGTTTAGCTGGATGA
TCCATCTCTATGTACCCTGTTGTCAACACGTGTCACGTTCCCAACGCTTG
TCAAGAGTACCGATTTTGTGGACCCGTTGAATATCACGTCATCGCGTATT
TTCCTTGATTTTTATTTTTCAATATTTGATTTAATCGATTTTGTTGTTTC
TAACCCCTTCCTTCCCCACACCCAATTCTCTACACGCACGGTGGTAGGCG
GGAGATCACCAGCGGCGATATTCCCTCCCAGGCCCGCCACAGGCCAACGC
CGGCACGGCTCCGCGCCCCAATCACGCGCAACTCCCAGCGTATTCTTCGC
ACGGACCTCAACAGGGATCCCCCCCGCTCCAACCCCAGCGGCACCGTCCC
GATCACCAGTCATTTGGCCGTCGCTCGTCTTCCCCCGCGGCAGTTTCCTT
GGGGGGTCCCGGGGACGGTGGAGGCTACGGCGGTGGAGACAGCCCCGTTC
TGCTCGGGGTGACGTCACACCGAAGTCCCCCGTCCACCCTGCCGACTGCT
TTCTCGTCCGCGGCCAACAATCACAGCAACAACAACCATAATCACGACGA
CGCCTCTTCCATCTTCAGCTCCAACGTGTCGGGGCACTCGAACTACTCGG
GGTTCTCGGGCTACTCGGCCTTCAACGCGTTCGGCGGGGGGAGCGACCTC
GGCAGCGTGGGCGGGCGCGACGGCGGTCGTGAGGGCGGCGGTGGAGGCAA
CGGGGGCAGCGGAAATGTGGCCGTGCCTTGGCGAACCCCGCCACTTGGGT
CAAGCAAGGCCGACTTCTCGGGGGTGGAAGAGGGGTCATCTGGTGTTGCC
GGGCTTTACGCTGCGGCGCACGGGTCAACTGGCGGGGCGTTAGGGTGGGG
GGCGGTCATGGGGACTGGCGGTGGTGGTGGCGGCAGGGGTGCCGATCAGC
GGTGAAAACCAAGGGAAGAGGGGATGGAAAACGGCGACAATATTGGGGAG
GGTGGCAACAAAAGAGGAGGAGCGCGGCGTGGGTTTTGTGAGCGCGCGGG
GCGGTATAAATCCTTTTGATTTTTAGAGACTGGTTTGTTCTCGGGATGAC
GTATATGGCAGTGTTTTGCTTGCCGTCACCCCTGTCCCATATTGTAGTAT
TTTTGTTTACGTCCTTTTTTCTTATTTTTTCACGTATCGTACTGGTTTTC
TCGTAGGCCTCGTGAAAAAGAAACTAAATTTGGTTGTGTGTGTT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig103:126433..130026-

>mRNA_A-nodosum_M_contig103.3.1 ID=mRNA_A-nodosum_M_contig103.3.1|Name=mRNA_A-nodosum_M_contig103.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1653bp|location=Sequence derived from alignment at A-nodosum_M_contig103:126433..130026- (Ascophyllum nodosum dioecious)
ATGGACCAGCGTGGCAGCTTCCGCAGCGAACCCGCGTCGGGCGACGACGG
CGAGGTTCCCGCGTTTACCACCCCGTCGTTCGGGCAGTCTAACAGGCGGA
GGAGTACCGGAGGAGGTGGCGGACCAGTGGTGATCGTTGGAGGTATTCGA
GGGGATGACGGCGGGGGTTTCCACGGTAGAGGTGGTTCTGATCTTGGGTC
TGCGGGATCACCCCAGTACGGGTCGAAGCGCGGAAGCGGGCTTCTCGGAG
GAGACATCTGGACGGCTTTCCCGCCCCAGGATCTGACGCTTTCGCCTCAA
GCCCGGTCCGACCACAACGAGGACGTAGAGCGGTATACGTCGGAGCACAG
CCTGTTCGGGTCATCGCCATGGAGGGGAGCACTAGGCGACGGCGGCGGAA
GAGGTGAAAGAGTGCGCAACGGCCAAACGTCGTTCGGTACGCCGGTTCCA
GGTCATCACGAAGCCCCCCGCTCGTCCACTCCGCCTGGCATAGGCACCAT
AGTTGCGGGAACGATCGCTGGGGGGGACGGCGGCGGAAGGAGTCTCGCGA
GTGGTGAGGTAGGCGGGGGCCAAGTGCACCCGCATCTCGACGAGCTTCAC
GATGGCGGCCGGAACAGGTCTTTCGAGCAGCGCGCCTCTCCGGAGGGAAG
GGGAGCTATGGGGTACATTCACAGCCCCTTCCAGGTGTCTCCCTCGCAGC
AGCGGCGGCACGCTCAACAGCGGCAGCAGCAGCAGTATCAGAAGCCTCAG
GGGTTTACCCAGTCTTCTGTGCACCGGCGCGAAGCGTCGACGGGATCTTC
ACATGCTGCTCGATCTCCGCCGTTCGAGAACTCCATCCCCGGCGAACCTC
CCAGTTTCTCGGGGGGAATCCCGGAGTCTCCCAGCACGGCGGCGCCTCGC
AGCAGCGGCATCGGGGGACTGCCTCGGGAGACTTCTCCGAGACAGGCGGG
AGATCACCAGCGGCGATATTCCCTCCCAGGCCCGCCACAGGCCAACGCCG
GCACGGCTCCGCGCCCCAATCACGCGCAACTCCCAGCGTATTCTTCGCAC
GGACCTCAACAGGGATCCCCCCCGCTCCAACCCCAGCGGCACCGTCCCGA
TCACCAGTCATTTGGCCGTCGCTCGTCTTCCCCCGCGGCAGTTTCCTTGG
GGGGTCCCGGGGACGGTGGAGGCTACGGCGGTGGAGACAGCCCCGTTCTG
CTCGGGGTGACGTCACACCGAAGTCCCCCGTCCACCCTGCCGACTGCTTT
CTCGTCCGCGGCCAACAATCACAGCAACAACAACCATAATCACGACGACG
CCTCTTCCATCTTCAGCTCCAACGTGTCGGGGCACTCGAACTACTCGGGG
TTCTCGGGCTACTCGGCCTTCAACGCGTTCGGCGGGGGGAGCGACCTCGG
CAGCGTGGGCGGGCGCGACGGCGGTCGTGAGGGCGGCGGTGGAGGCAACG
GGGGCAGCGGAAATGTGGCCGTGCCTTGGCGAACCCCGCCACTTGGGTCA
AGCAAGGCCGACTTCTCGGGGGTGGAAGAGGGGTCATCTGGTGTTGCCGG
GCTTTACGCTGCGGCGCACGGGTCAACTGGCGGGGCGTTAGGGTGGGGGG
CGGTCATGGGGACTGGCGGTGGTGGTGGCGGCAGGGGTGCCGATCAGCGG
TGA
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