mRNA_A-nodosum_M_contig10273.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10273.3.1
Unique NamemRNA_A-nodosum_M_contig10273.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig10273.3.1 vs. uniprot
Match: D7FNY3_ECTSI (DNA-directed RNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY3_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 2.070e-12
Identity = 37/52 (71.15%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:    1 RRKRRLLRVDRDGHLPDPVLSTLSVNRNLGCVSEAFQASLQTFLDSSPPSLQ 156
            +R RRLLR      LPDPVLSTLSVN++LGCVSEAFQ SLQ FLDS+P SL+
Sbjct:   34 KRPRRLLRKCPGAGLPDPVLSTLSVNKDLGCVSEAFQKSLQAFLDSNPASLR 85
[Close]
BLAST of mRNA_A-nodosum_M_contig10273.3.1 vs. uniprot
Match: A0A6H5KJ16_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ16_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 5.390e-12
Identity = 36/52 (69.23%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:    1 RRKRRLLRVDRDGHLPDPVLSTLSVNRNLGCVSEAFQASLQTFLDSSPPSLQ 156
            +R RRLLR      LPDPVLSTL+VN++LGCVSEAFQ SLQ FLDS+P SL+
Sbjct: 1263 KRPRRLLRKCPGAGLPDPVLSTLNVNKDLGCVSEAFQKSLQAFLDSNPASLR 1314
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10273.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNY3_ECTSI2.070e-1271.15DNA-directed RNA polymerase n=1 Tax=Ectocarpus sil... [more]
A0A6H5KJ16_9PHAE5.390e-1269.23DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10273contigA-nodosum_M_contig10273:8425..9885 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FNY3
Preferred nameRPA1
PFAMsRNA_pol_Rpb1_1,RNA_pol_Rpb1_2,RNA_pol_Rpb1_3,RNA_pol_Rpb1_4,RNA_pol_Rpb1_5
Model size211
Max annot lvl2759|Eukaryota
KEGG rclassRC02795
KEGG koko:K02999
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020
KEGG ModuleM00182
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005736,GO:0005911,GO:0006139,GO:0006351,GO:0006360,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009987,GO:0010467,GO:0016070,GO:0018130,GO:0019438,GO:0030054,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0055029,GO:0055044,GO:0061695,GO:0070013,GO:0071704,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
Exons2
Evalue3.39e-13
EggNOG OGsCOG0086@1|root,KOG0262@2759|Eukaryota
EC2.7.7.6
Descriptionnegative regulation of protein localization to nucleolus
Cds size210
COG categoryK
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866391.2049532-CDS-A-nodosum_M_contig10273:8424..85131680866391.2049532-CDS-A-nodosum_M_contig10273:8424..8513Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10273 8425..8513 +
1680866391.2193632-CDS-A-nodosum_M_contig10273:9764..98851680866391.2193632-CDS-A-nodosum_M_contig10273:9764..9885Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10273 9765..9885 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10273.3.1prot_A-nodosum_M_contig10273.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10273 8425..9885 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10273.3.1

>prot_A-nodosum_M_contig10273.3.1 ID=prot_A-nodosum_M_contig10273.3.1|Name=mRNA_A-nodosum_M_contig10273.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=70bp
RRKRRLLRVDRDGHLPDPVLSTLSVNRNLGCVSEAFQASLQTFLDSSPPS
LQKPPRPEIFEVTAQSAPLA
back to top

mRNA from alignment at A-nodosum_M_contig10273:8425..9885+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10273.3.1 ID=mRNA_A-nodosum_M_contig10273.3.1|Name=mRNA_A-nodosum_M_contig10273.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1461bp|location=Sequence derived from alignment at A-nodosum_M_contig10273:8425..9885+ (Ascophyllum nodosum dioecious)
CGACGGAAAAGGCGTCTATTGCGGGTGGACCGAGACGGCCATCTCCCCGA
TCCCGTGCTGTCAACGCTCAGCGTGAATAGAAATTTGGGGTGAGTTGATG
AGTGATGGGTTCTCGTGTGTCGATTTTCCTAACCAAGTTGATCCGCCAAT
GTGCGTGGTGTACCGTTTCATGTTGATTTCGACGGGGCAGGGGGTACACA
AGGTTGGAATTTCCAAAGATAACTAACTGCGTTACTAATCACTAGACAAG
AGAAGTAGGTAGAGTGTTTTTTTTCACGTCCATCATGTTACAACAGACCA
AGGTTTACTAGACTGTGGGTTTTGTAGCCTGCGAATTGCCGGTTTGAAGC
ATTGTGGCTCGATGTCTCGAAATATGTATCTTTGGCGGAAATCGTTCGGA
AAGTTTTGGGAATGGCTTGGCGTGTTATTTCAGTCAAGAGTTGAGCGTGA
GGCCAAGATGAAAAAAGAGGTCGGCGACGCAGCTGAGCTTGGGTCTTGAT
CTCTCTGGTGTTCGCCGTGGCACTTGCCGGCAAAAGCTGAAAAATCTCAG
GTGTTGGTCGGTTGAGCGTTGAGGAAAGGAGACGGATTTATGATCTATCT
TCTTTCTTTACCCGTTCTTCCACGTGACCCTCTCCTATCATTCGCACAGC
TATATTAAAAGTCAGAACGCCGTATATTCTGTTGCCTCCCAAGGACCTCG
AAGCCCCATGGGAACGCGGCTGGGAAAGCGGTGGCACATGTTTTTTTAAT
GAGGTTACTCTTGATTTTTTTGTAGGAGATGAATGCTCTGTGCGTGCGTG
TGTTTTTTTTGTGAGTTCATTGACCTCCTCCGAGAACCTTTGACAAGGCC
CGACAAAGGTTAGATTGCCGCGGTCGGTACCTTCTCTAGATTGCCGCGGT
CGGCACCTTCTGTGTTGGTGTTTTGTATTTGTAAATATGTATTGTGTGTG
TGGTCACCATTTCAGCAGTTTGGGCTTCGACTACTGTGTTACCCTGGTGT
TACGATACAACTGGGAAATATTGGAGAGAAAAGCTAAAACGATGACGAGA
ACCACGTTGGCGCAAAAATAGAAATGGTGGGACGGAGTTTTGGCGCTAGG
ATTAAGGGGCGAAACGAGCTTTTGAACGTCGTACCTACTGGGACAGCTTT
GTGAATTTCTTGATGTCAAGTACCTTGTGGACTGAATCACTCCATTTTTG
CCTTCATGAATCCTTGCTCGATCACCTCTAATAAAACTTCGTTTTACTGT
GAGCAATGACTCCGTACATTTGTGAAACGCCTCCCATACTGAACTCCCAT
TTTTTTTTTTTTTTGCTCTTGGATTTCTTCGTGCCCACAGCTGCGTGAGT
GAAGCGTTTCAGGCCTCCTTGCAAACATTCCTCGACTCCAGCCCCCCGAG
CCTTCAAAAGCCTCCTCGTCCAGAAATATTCGAGGTCACCGCCCAGTCGG
CACCTCTTGCA
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig10273:8425..9885+

>mRNA_A-nodosum_M_contig10273.3.1 ID=mRNA_A-nodosum_M_contig10273.3.1|Name=mRNA_A-nodosum_M_contig10273.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=210bp|location=Sequence derived from alignment at A-nodosum_M_contig10273:8425..9885+ (Ascophyllum nodosum dioecious)
CGACGGAAAAGGCGTCTATTGCGGGTGGACCGAGACGGCCATCTCCCCGA
TCCCGTGCTGTCAACGCTCAGCGTGAATAGAAATTTGGGCTGCGTGAGTG
AAGCGTTTCAGGCCTCCTTGCAAACATTCCTCGACTCCAGCCCCCCGAGC
CTTCAAAAGCCTCCTCGTCCAGAAATATTCGAGGTCACCGCCCAGTCGGC
ACCTCTTGCA
back to top