prot_A-nodosum_M_contig10273.3.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig10273.3.1
Unique Nameprot_A-nodosum_M_contig10273.3.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length70
Homology
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BLAST of mRNA_A-nodosum_M_contig10273.3.1 vs. uniprot
Match: D7FNY3_ECTSI (DNA-directed RNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY3_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 2.070e-12
Identity = 37/52 (71.15%), Postives = 42/52 (80.77%), Query Frame = 0 
Query:    1 RRKRRLLRVDRDGHLPDPVLSTLSVNRNLGCVSEAFQASLQTFLDSSPPSLQ 52
            +R RRLLR      LPDPVLSTLSVN++LGCVSEAFQ SLQ FLDS+P SL+
Sbjct:   34 KRPRRLLRKCPGAGLPDPVLSTLSVNKDLGCVSEAFQKSLQAFLDSNPASLR 85
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BLAST of mRNA_A-nodosum_M_contig10273.3.1 vs. uniprot
Match: A0A6H5KJ16_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ16_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 5.390e-12
Identity = 36/52 (69.23%), Postives = 42/52 (80.77%), Query Frame = 0 
Query:    1 RRKRRLLRVDRDGHLPDPVLSTLSVNRNLGCVSEAFQASLQTFLDSSPPSLQ 52
            +R RRLLR      LPDPVLSTL+VN++LGCVSEAFQ SLQ FLDS+P SL+
Sbjct: 1263 KRPRRLLRKCPGAGLPDPVLSTLNVNKDLGCVSEAFQKSLQAFLDSNPASLR 1314
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10273.3.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNY3_ECTSI2.070e-1271.15DNA-directed RNA polymerase n=1 Tax=Ectocarpus sil... [more]
A0A6H5KJ16_9PHAE5.390e-1269.23DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.357.120coord: 2..67
e-value: 3.2E-7
score: 32.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10273contigA-nodosum_M_contig10273:8425..9885 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10273.3.1mRNA_A-nodosum_M_contig10273.3.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig10273 8425..9885 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig10273.3.1 ID=prot_A-nodosum_M_contig10273.3.1|Name=mRNA_A-nodosum_M_contig10273.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=70bp
RRKRRLLRVDRDGHLPDPVLSTLSVNRNLGCVSEAFQASLQTFLDSSPPS
LQKPPRPEIFEVTAQSAPLA
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