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Homology
BLAST of mRNA_A-nodosum_M_contig10273.3.1 vs. uniprot
Match: D7FNY3_ECTSI (DNA-directed RNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY3_ECTSI) HSP 1 Score: 70.1 bits (170), Expect = 2.070e-12 Identity = 37/52 (71.15%), Postives = 42/52 (80.77%), Query Frame = 1 Query: 1 RRKRRLLRVDRDGHLPDPVLSTLSVNRNLGCVSEAFQASLQTFLDSSPPSLQ 156
+R RRLLR LPDPVLSTLSVN++LGCVSEAFQ SLQ FLDS+P SL+
Sbjct: 34 KRPRRLLRKCPGAGLPDPVLSTLSVNKDLGCVSEAFQKSLQAFLDSNPASLR 85
BLAST of mRNA_A-nodosum_M_contig10273.3.1 vs. uniprot
Match: A0A6H5KJ16_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ16_9PHAE) HSP 1 Score: 68.9 bits (167), Expect = 5.390e-12 Identity = 36/52 (69.23%), Postives = 42/52 (80.77%), Query Frame = 1 Query: 1 RRKRRLLRVDRDGHLPDPVLSTLSVNRNLGCVSEAFQASLQTFLDSSPPSLQ 156
+R RRLLR LPDPVLSTL+VN++LGCVSEAFQ SLQ FLDS+P SL+
Sbjct: 1263 KRPRRLLRKCPGAGLPDPVLSTLNVNKDLGCVSEAFQKSLQAFLDSNPASLR 1314
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10273.3.1 vs. uniprot
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
| Match Name | E-value | Identity | Description | |
|---|
| D7FNY3_ECTSI | 2.070e-12 | 71.15 | DNA-directed RNA polymerase n=1 Tax=Ectocarpus sil... | [more] |
| A0A6H5KJ16_9PHAE | 5.390e-12 | 69.23 | DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... | [more] |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 0 |
| Start | 0 |
| Seed ortholog | 2880.D7FNY3 |
| Preferred name | RPA1 |
| PFAMs | RNA_pol_Rpb1_1,RNA_pol_Rpb1_2,RNA_pol_Rpb1_3,RNA_pol_Rpb1_4,RNA_pol_Rpb1_5 |
| Model size | 211 |
| Max annot lvl | 2759|Eukaryota |
| KEGG rclass | RC02795 |
| KEGG ko | ko:K02999 |
| KEGG Reaction | R00435,R00441,R00442,R00443 |
| KEGG Pathway | ko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020 |
| KEGG Module | M00182 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005736,GO:0005911,GO:0006139,GO:0006351,GO:0006360,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009987,GO:0010467,GO:0016070,GO:0018130,GO:0019438,GO:0030054,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0055029,GO:0055044,GO:0061695,GO:0070013,GO:0071704,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234 |
| Exons | 2 |
| Evalue | 3.39e-13 |
| EggNOG OGs | COG0086@1|root,KOG0262@2759|Eukaryota |
| EC | 2.7.7.6 |
| Description | negative regulation of protein localization to nucleolus |
| Cds size | 210 |
| COG category | K |
| BRITE | br01611,ko00000,ko00001,ko00002,ko01000,ko03021 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680866391.2049532-CDS-A-nodosum_M_contig10273:8424..8513 | 1680866391.2049532-CDS-A-nodosum_M_contig10273:8424..8513 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig10273 8425..8513 + |
| 1680866391.2193632-CDS-A-nodosum_M_contig10273:9764..9885 | 1680866391.2193632-CDS-A-nodosum_M_contig10273:9764..9885 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig10273 9765..9885 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig10273.3.1 >prot_A-nodosum_M_contig10273.3.1 ID=prot_A-nodosum_M_contig10273.3.1|Name=mRNA_A-nodosum_M_contig10273.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=70bp
RRKRRLLRVDRDGHLPDPVLSTLSVNRNLGCVSEAFQASLQTFLDSSPPS
LQKPPRPEIFEVTAQSAPLA back to topmRNA from alignment at A-nodosum_M_contig10273:8425..9885+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_A-nodosum_M_contig10273.3.1 ID=mRNA_A-nodosum_M_contig10273.3.1|Name=mRNA_A-nodosum_M_contig10273.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1461bp|location=Sequence derived from alignment at A-nodosum_M_contig10273:8425..9885+ (Ascophyllum nodosum dioecious)
CGACGGAAAAGGCGTCTATTGCGGGTGGACCGAGACGGCCATCTCCCCGA
TCCCGTGCTGTCAACGCTCAGCGTGAATAGAAATTTGGGGTGAGTTGATG
AGTGATGGGTTCTCGTGTGTCGATTTTCCTAACCAAGTTGATCCGCCAAT
GTGCGTGGTGTACCGTTTCATGTTGATTTCGACGGGGCAGGGGGTACACA
AGGTTGGAATTTCCAAAGATAACTAACTGCGTTACTAATCACTAGACAAG
AGAAGTAGGTAGAGTGTTTTTTTTCACGTCCATCATGTTACAACAGACCA
AGGTTTACTAGACTGTGGGTTTTGTAGCCTGCGAATTGCCGGTTTGAAGC
ATTGTGGCTCGATGTCTCGAAATATGTATCTTTGGCGGAAATCGTTCGGA
AAGTTTTGGGAATGGCTTGGCGTGTTATTTCAGTCAAGAGTTGAGCGTGA
GGCCAAGATGAAAAAAGAGGTCGGCGACGCAGCTGAGCTTGGGTCTTGAT
CTCTCTGGTGTTCGCCGTGGCACTTGCCGGCAAAAGCTGAAAAATCTCAG
GTGTTGGTCGGTTGAGCGTTGAGGAAAGGAGACGGATTTATGATCTATCT
TCTTTCTTTACCCGTTCTTCCACGTGACCCTCTCCTATCATTCGCACAGC
TATATTAAAAGTCAGAACGCCGTATATTCTGTTGCCTCCCAAGGACCTCG
AAGCCCCATGGGAACGCGGCTGGGAAAGCGGTGGCACATGTTTTTTTAAT
GAGGTTACTCTTGATTTTTTTGTAGGAGATGAATGCTCTGTGCGTGCGTG
TGTTTTTTTTGTGAGTTCATTGACCTCCTCCGAGAACCTTTGACAAGGCC
CGACAAAGGTTAGATTGCCGCGGTCGGTACCTTCTCTAGATTGCCGCGGT
CGGCACCTTCTGTGTTGGTGTTTTGTATTTGTAAATATGTATTGTGTGTG
TGGTCACCATTTCAGCAGTTTGGGCTTCGACTACTGTGTTACCCTGGTGT
TACGATACAACTGGGAAATATTGGAGAGAAAAGCTAAAACGATGACGAGA
ACCACGTTGGCGCAAAAATAGAAATGGTGGGACGGAGTTTTGGCGCTAGG
ATTAAGGGGCGAAACGAGCTTTTGAACGTCGTACCTACTGGGACAGCTTT
GTGAATTTCTTGATGTCAAGTACCTTGTGGACTGAATCACTCCATTTTTG
CCTTCATGAATCCTTGCTCGATCACCTCTAATAAAACTTCGTTTTACTGT
GAGCAATGACTCCGTACATTTGTGAAACGCCTCCCATACTGAACTCCCAT
TTTTTTTTTTTTTTGCTCTTGGATTTCTTCGTGCCCACAGCTGCGTGAGT
GAAGCGTTTCAGGCCTCCTTGCAAACATTCCTCGACTCCAGCCCCCCGAG
CCTTCAAAAGCCTCCTCGTCCAGAAATATTCGAGGTCACCGCCCAGTCGG
CACCTCTTGCA back to topCoding sequence (CDS) from alignment at A-nodosum_M_contig10273:8425..9885+ >mRNA_A-nodosum_M_contig10273.3.1 ID=mRNA_A-nodosum_M_contig10273.3.1|Name=mRNA_A-nodosum_M_contig10273.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=210bp|location=Sequence derived from alignment at A-nodosum_M_contig10273:8425..9885+ (Ascophyllum nodosum dioecious)
CGACGGAAAAGGCGTCTATTGCGGGTGGACCGAGACGGCCATCTCCCCGA
TCCCGTGCTGTCAACGCTCAGCGTGAATAGAAATTTGGGCTGCGTGAGTG
AAGCGTTTCAGGCCTCCTTGCAAACATTCCTCGACTCCAGCCCCCCGAGC
CTTCAAAAGCCTCCTCGTCCAGAAATATTCGAGGTCACCGCCCAGTCGGC
ACCTCTTGCA back to top
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