mRNA_A-nodosum_M_contig10273.10.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10273.10.1
Unique NamemRNA_A-nodosum_M_contig10273.10.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig10273.10.1 vs. uniprot
Match: D7FNY3_ECTSI (DNA-directed RNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY3_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 8.280e-39
Identity = 75/95 (78.95%), Postives = 81/95 (85.26%), Query Frame = 3 
Query:    3 ARASIVAEITGVFGAYGISVDPQHLGLVADRMTFGGGYRAMNRAGMVDFSSPCLQMSFETTAGFLTRAAVAGQSDKLKSPSASIVMGHVGALGPG 287
            ARASIVAEITGVFGAYGI+VDP+HLGLVAD MTF GGYR +NRAGM DFSSPCLQMSFETT  F+ +AAVA  SD+LKSPSA IVMG VG  G G
Sbjct:  537 ARASIVAEITGVFGAYGIAVDPRHLGLVADHMTFDGGYRPLNRAGMADFSSPCLQMSFETTTDFMAKAAVARSSDRLKSPSARIVMGRVGNFGTG 631
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BLAST of mRNA_A-nodosum_M_contig10273.10.1 vs. uniprot
Match: A0A6H5KJ16_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ16_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 1.920e-38
Identity = 74/95 (77.89%), Postives = 82/95 (86.32%), Query Frame = 3 
Query:    3 ARASIVAEITGVFGAYGISVDPQHLGLVADRMTFGGGYRAMNRAGMVDFSSPCLQMSFETTAGFLTRAAVAGQSDKLKSPSASIVMGHVGALGPG 287
            ARASIV+EITGVFGAYGI+VDP+HLGLVAD MTF GGYR +NRAGM DFSSPCLQMSFETT  F+ +AAVA  SD+LKSPSA IVMG VG+ G G
Sbjct: 1766 ARASIVSEITGVFGAYGIAVDPRHLGLVADHMTFDGGYRPLNRAGMADFSSPCLQMSFETTTDFMAKAAVARSSDRLKSPSARIVMGRVGSFGTG 1860
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BLAST of mRNA_A-nodosum_M_contig10273.10.1 vs. uniprot
Match: A0A7R9ZT77_9STRA (DNA-directed RNA polymerase n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZT77_9STRA)

HSP 1 Score: 115 bits (289), Expect = 3.730e-30
Identity = 61/95 (64.21%), Postives = 73/95 (76.84%), Query Frame = 3 
Query:    3 ARASIVAEITGVFGAYGISVDPQHLGLVADRMTFGGGYRAMNRAGMVDFSSPCLQMSFETTAGFLTRAAVAGQSDKLKSPSASIVMGHVGALGPG 287
            AR +IV ++  VFGAYGI VDP+HL L+AD MT+ GGY AMNR GM D SSP LQMSFETTA FLT+AA++G  D+LKSPSA+IV+G     G G
Sbjct:   46 ARNNIVDQVRSVFGAYGIEVDPRHLTLIADYMTYSGGYTAMNRIGMKDTSSPFLQMSFETTATFLTQAALSGTCDQLKSPSANIVVGRPIRHGTG 140
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BLAST of mRNA_A-nodosum_M_contig10273.10.1 vs. uniprot
Match: A0A7S2G4R6_9STRA (DNA-directed RNA polymerase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G4R6_9STRA)

HSP 1 Score: 115 bits (287), Expect = 2.520e-29
Identity = 61/96 (63.54%), Postives = 71/96 (73.96%), Query Frame = 3 
Query:    3 ARASIVAEITGVFGAYGISVDPQHLGLVADRMTFGGGYRAMNRAGMVD-FSSPCLQMSFETTAGFLTRAAVAGQSDKLKSPSASIVMGHVGALGPG 287
            AR +IVAE+ GVF  YGIS+D +HL L+AD MTF GGYRA NR G+ +  SSP LQMSFETTA FLT AAV G  D+L+SPSA IVMG +   G G
Sbjct:   83 ARGAIVAEVRGVFDVYGISIDARHLSLIADTMTFSGGYRAFNRLGIAEGSSSPYLQMSFETTATFLTEAAVRGDPDRLQSPSARIVMGQLAKQGTG 178
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BLAST of mRNA_A-nodosum_M_contig10273.10.1 vs. uniprot
Match: A0A7S1GNJ0_CYCTE (DNA-directed RNA polymerase n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GNJ0_CYCTE)

HSP 1 Score: 114 bits (284), Expect = 2.660e-29
Identity = 59/95 (62.11%), Postives = 72/95 (75.79%), Query Frame = 3 
Query:    3 ARASIVAEITGVFGAYGISVDPQHLGLVADRMTFGGGYRAMNRAGMVDFSSPCLQMSFETTAGFLTRAAVAGQSDKLKSPSASIVMGHVGALGPG 287
            AR +IV +I  VFGAYGISVDP+HL L+AD MTF GG++AMNR GM D SSP LQMSFETTA F+T AA+   ++ L+SPSA+IV+G     G G
Sbjct:   52 ARNNIVEQIRSVFGAYGISVDPRHLSLIADYMTFDGGFKAMNRNGMNDISSPFLQMSFETTANFMTEAAMKASTEPLRSPSANIVVGRPVRHGTG 146
[Close]
BLAST of mRNA_A-nodosum_M_contig10273.10.1 vs. uniprot
Match: W7TZA0_9STRA (DNA-directed RNA polymerase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TZA0_9STRA)

HSP 1 Score: 119 bits (298), Expect = 3.140e-28
Identity = 62/95 (65.26%), Postives = 74/95 (77.89%), Query Frame = 3 
Query:    3 ARASIVAEITGVFGAYGISVDPQHLGLVADRMTFGGGYRAMNRAGMVDFSSPCLQMSFETTAGFLTRAAVAGQSDKLKSPSASIVMGHVGALGPG 287
            ARA+IV EI GVFGAYGI+VDP+HLGLVAD MT+ GG+RA+NR GM + SSP LQMSFETTA FLT AA+  + D L++PSA +VMG     G G
Sbjct: 1155 ARATIVKEIKGVFGAYGIAVDPRHLGLVADFMTYQGGFRALNRIGMSEVSSPFLQMSFETTATFLTEAALNSEKDDLQTPSAKLVMGQPTGNGTG 1249
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BLAST of mRNA_A-nodosum_M_contig10273.10.1 vs. uniprot
Match: A0A836C8M0_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8M0_9STRA)

HSP 1 Score: 119 bits (298), Expect = 3.200e-28
Identity = 62/94 (65.96%), Postives = 70/94 (74.47%), Query Frame = 3 
Query:    6 RASIVAEITGVFGAYGISVDPQHLGLVADRMTFGGGYRAMNRAGMVDFSSPCLQMSFETTAGFLTRAAVAGQSDKLKSPSASIVMGHVGALGPG 287
            RA+I  EI  VF  YGI VD +HLGL+AD MTF GGYRAMNR GM D +SP LQMSFETTA FL +AA+  + +KLKSPSA IVMG VG  G G
Sbjct: 1558 RAAITKEIAAVFAVYGIGVDARHLGLIADYMTFYGGYRAMNRIGMKDIASPFLQMSFETTASFLVQAALDSKVEKLKSPSARIVMGQVGDFGTG 1651
[Close]
BLAST of mRNA_A-nodosum_M_contig10273.10.1 vs. uniprot
Match: K8YRY5_NANGC (DNA-directed RNA polymerase subunit n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YRY5_NANGC)

HSP 1 Score: 119 bits (298), Expect = 3.220e-28
Identity = 62/95 (65.26%), Postives = 74/95 (77.89%), Query Frame = 3 
Query:    3 ARASIVAEITGVFGAYGISVDPQHLGLVADRMTFGGGYRAMNRAGMVDFSSPCLQMSFETTAGFLTRAAVAGQSDKLKSPSASIVMGHVGALGPG 287
            ARA+IV EI GVFGAYGI+VDP+HLGLVAD MT+ GG+RA+NR GM + SSP LQMSFETTA FLT AA+  + D L++PSA +VMG     G G
Sbjct: 1745 ARATIVKEIKGVFGAYGIAVDPRHLGLVADFMTYQGGFRALNRIGMSEVSSPFLQMSFETTATFLTEAALNSEKDDLQTPSAKLVMGQPTGNGTG 1839
[Close]
BLAST of mRNA_A-nodosum_M_contig10273.10.1 vs. uniprot
Match: A0A7S0PVI6_9STRA (DNA-directed RNA polymerase n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0PVI6_9STRA)

HSP 1 Score: 112 bits (281), Expect = 8.280e-28
Identity = 58/95 (61.05%), Postives = 72/95 (75.79%), Query Frame = 3 
Query:    3 ARASIVAEITGVFGAYGISVDPQHLGLVADRMTFGGGYRAMNRAGMVDFSSPCLQMSFETTAGFLTRAAVAGQSDKLKSPSASIVMGHVGALGPG 287
            AR +IV +I  VFGAYGI VDP+HL L+AD MT+ GG++AMNR GM + SS  LQMSFETTA F+T AA+AG+ + LKSPSA+IV+G     G G
Sbjct:  147 ARNNIVEQIRSVFGAYGIEVDPRHLSLIADYMTYEGGFKAMNRGGMEEISSAFLQMSFETTAAFMTNAALAGRKEYLKSPSANIVLGQPMKHGTG 241
[Close]
BLAST of mRNA_A-nodosum_M_contig10273.10.1 vs. uniprot
Match: A0A8J2WSH6_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WSH6_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.100e-27
Identity = 60/93 (64.52%), Postives = 71/93 (76.34%), Query Frame = 3 
Query:    3 ARASIVAEITGVFGAYGISVDPQHLGLVADRMTFGGGYRAMNRAGMVDFSSPCLQMSFETTAGFLTRAAVAGQSDKLKSPSASIVMGHVGALG 281
            ARA+I+ E+TGVFG YGI ++P HL L+AD MT GGGYRAMNR  M+D SSP LQMSFETTA FLT AA +   D L+SPSASIV+G    +G
Sbjct: 1513 ARATIIQEVTGVFGVYGIDIEPHHLSLIADFMTAGGGYRAMNRGAMMDHSSPYLQMSFETTASFLTSAAQSSAVDTLQSPSASIVVGQPVKVG 1605
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10273.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNY3_ECTSI8.280e-3978.95DNA-directed RNA polymerase n=1 Tax=Ectocarpus sil... [more]
A0A6H5KJ16_9PHAE1.920e-3877.89DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
A0A7R9ZT77_9STRA3.730e-3064.21DNA-directed RNA polymerase n=1 Tax=Craspedostauro... [more]
A0A7S2G4R6_9STRA2.520e-2963.54DNA-directed RNA polymerase n=1 Tax=Florenciella p... [more]
A0A7S1GNJ0_CYCTE2.660e-2962.11DNA-directed RNA polymerase n=1 Tax=Cyclophora ten... [more]
W7TZA0_9STRA3.140e-2865.26DNA-directed RNA polymerase n=1 Tax=Nannochloropsi... [more]
A0A836C8M0_9STRA3.200e-2865.96DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
K8YRY5_NANGC3.220e-2865.26DNA-directed RNA polymerase subunit n=2 Tax=Monodo... [more]
A0A7S0PVI6_9STRA8.280e-2861.05DNA-directed RNA polymerase n=1 Tax=Asterionellops... [more]
A0A8J2WSH6_9STRA1.100e-2764.52DNA-directed RNA polymerase subunit n=1 Tax=Pelago... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10273contigA-nodosum_M_contig10273:15264..15736 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FNY3
Preferred nameRPA1
PFAMsRNA_pol_Rpb1_1,RNA_pol_Rpb1_2,RNA_pol_Rpb1_3,RNA_pol_Rpb1_4,RNA_pol_Rpb1_5
Model size473
Max annot lvl2759|Eukaryota
KEGG rclassRC02795
KEGG koko:K02999
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020
KEGG ModuleM00182
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005736,GO:0005911,GO:0006139,GO:0006351,GO:0006360,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009987,GO:0010467,GO:0016070,GO:0018130,GO:0019438,GO:0030054,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0055029,GO:0055044,GO:0061695,GO:0070013,GO:0071704,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
Exons1
Evalue2.29e-21
EggNOG OGsCOG0086@1|root,KOG0262@2759|Eukaryota
EC2.7.7.6
Descriptionnegative regulation of protein localization to nucleolus
Cds size225
COG categoryK
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866391.2617564-UTR-A-nodosum_M_contig10273:15263..153581680866391.2617564-UTR-A-nodosum_M_contig10273:15263..15358Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10273 15264..15358 +
1680866391.2880769-UTR-A-nodosum_M_contig10273:15583..157361680866391.2880769-UTR-A-nodosum_M_contig10273:15583..15736Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10273 15584..15736 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866391.2751157-CDS-A-nodosum_M_contig10273:15358..155831680866391.2751157-CDS-A-nodosum_M_contig10273:15358..15583Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10273 15359..15583 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10273.10.1prot_A-nodosum_M_contig10273.10.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10273 15359..15583 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10273.10.1

>prot_A-nodosum_M_contig10273.10.1 ID=prot_A-nodosum_M_contig10273.10.1|Name=mRNA_A-nodosum_M_contig10273.10.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=75bp
MTFGGGYRAMNRAGMVDFSSPCLQMSFETTAGFLTRAAVAGQSDKLKSPS
ASIVMGHVGALGPGCSTFSSRRKY*
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mRNA from alignment at A-nodosum_M_contig10273:15264..15736+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10273.10.1 ID=mRNA_A-nodosum_M_contig10273.10.1|Name=mRNA_A-nodosum_M_contig10273.10.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=473bp|location=Sequence derived from alignment at A-nodosum_M_contig10273:15264..15736+ (Ascophyllum nodosum dioecious)
CCGCTCGAGCTTCGATCGTTGCGGAGATTACTGGAGTATTTGGAGCTTAC
GGCATCTCCGTAGACCCCCAACACCTCGGTCTGGTGGCCGACCGCATGAC
GTTCGGCGGGGGATACCGCGCTATGAACCGTGCTGGAATGGTCGATTTTT
CCTCGCCGTGTCTGCAGATGAGCTTTGAAACGACGGCTGGTTTCCTTACG
AGGGCTGCCGTGGCTGGGCAGAGCGATAAGCTCAAGTCACCCTCGGCAAG
TATAGTGATGGGACATGTAGGAGCTTTGGGACCGGGATGTTCGACCTTCT
CCAGCCGGCGCAAGTATTAATAGTTTGAAAAGCAACACATATCACTTGGC
CGATGTGGATTTTAGATGTGATAACACTCTTGGTACTAACATACTAATAT
TAATACCACTGCTAATATAATATGtactcTACTCTACCTGGTAGTATACA
AGGCGACAGCTGTGGGATGTTTT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10273:15264..15736+

>mRNA_A-nodosum_M_contig10273.10.1 ID=mRNA_A-nodosum_M_contig10273.10.1|Name=mRNA_A-nodosum_M_contig10273.10.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=225bp|location=Sequence derived from alignment at A-nodosum_M_contig10273:15264..15736+ (Ascophyllum nodosum dioecious)
ATGACGTTCGGCGGGGGATACCGCGCTATGAACCGTGCTGGAATGGTCGA
TTTTTCCTCGCCGTGTCTGCAGATGAGCTTTGAAACGACGGCTGGTTTCC
TTACGAGGGCTGCCGTGGCTGGGCAGAGCGATAAGCTCAAGTCACCCTCG
GCAAGTATAGTGATGGGACATGTAGGAGCTTTGGGACCGGGATGTTCGAC
CTTCTCCAGCCGGCGCAAGTATTAA
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