prot_A-nodosum_M_contig10273.10.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig10273.10.1
Unique Nameprot_A-nodosum_M_contig10273.10.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length75
Homology
BLAST of mRNA_A-nodosum_M_contig10273.10.1 vs. uniprot
Match: A0A6H5KJ16_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ16_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 5.640e-21
Identity = 47/64 (73.44%), Postives = 52/64 (81.25%), Query Frame = 0
Query:    1 MTFGGGYRAMNRAGMVDFSSPCLQMSFETTAGFLTRAAVAGQSDKLKSPSASIVMGHVGALGPG 64
            MTF GGYR +NRAGM DFSSPCLQMSFETT  F+ +AAVA  SD+LKSPSA IVMG VG+ G G
Sbjct: 1797 MTFDGGYRPLNRAGMADFSSPCLQMSFETTTDFMAKAAVARSSDRLKSPSARIVMGRVGSFGTG 1860          
BLAST of mRNA_A-nodosum_M_contig10273.10.1 vs. uniprot
Match: D7FNY3_ECTSI (DNA-directed RNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY3_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 1.400e-20
Identity = 47/64 (73.44%), Postives = 51/64 (79.69%), Query Frame = 0
Query:    1 MTFGGGYRAMNRAGMVDFSSPCLQMSFETTAGFLTRAAVAGQSDKLKSPSASIVMGHVGALGPG 64
            MTF GGYR +NRAGM DFSSPCLQMSFETT  F+ +AAVA  SD+LKSPSA IVMG VG  G G
Sbjct:  568 MTFDGGYRPLNRAGMADFSSPCLQMSFETTTDFMAKAAVARSSDRLKSPSARIVMGRVGNFGTG 631          
BLAST of mRNA_A-nodosum_M_contig10273.10.1 vs. uniprot
Match: A0A836C8M0_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8M0_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 8.800e-17
Identity = 44/64 (68.75%), Postives = 49/64 (76.56%), Query Frame = 0
Query:    1 MTFGGGYRAMNRAGMVDFSSPCLQMSFETTAGFLTRAAVAGQSDKLKSPSASIVMGHVGALGPG 64
            MTF GGYRAMNR GM D +SP LQMSFETTA FL +AA+  + +KLKSPSA IVMG VG  G G
Sbjct: 1588 MTFYGGYRAMNRIGMKDIASPFLQMSFETTASFLVQAALDSKVEKLKSPSARIVMGQVGDFGTG 1651          
BLAST of mRNA_A-nodosum_M_contig10273.10.1 vs. uniprot
Match: A0A7R9ZT77_9STRA (DNA-directed RNA polymerase n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZT77_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.290e-16
Identity = 42/64 (65.62%), Postives = 49/64 (76.56%), Query Frame = 0
Query:    1 MTFGGGYRAMNRAGMVDFSSPCLQMSFETTAGFLTRAAVAGQSDKLKSPSASIVMGHVGALGPG 64
            MT+ GGY AMNR GM D SSP LQMSFETTA FLT+AA++G  D+LKSPSA+IV+G     G G
Sbjct:   77 MTYSGGYTAMNRIGMKDTSSPFLQMSFETTATFLTQAALSGTCDQLKSPSANIVVGRPIRHGTG 140          
BLAST of mRNA_A-nodosum_M_contig10273.10.1 vs. uniprot
Match: A0A7S2G4R6_9STRA (DNA-directed RNA polymerase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G4R6_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 4.660e-15
Identity = 42/65 (64.62%), Postives = 47/65 (72.31%), Query Frame = 0
Query:    1 MTFGGGYRAMNRAGMVD-FSSPCLQMSFETTAGFLTRAAVAGQSDKLKSPSASIVMGHVGALGPG 64
            MTF GGYRA NR G+ +  SSP LQMSFETTA FLT AAV G  D+L+SPSA IVMG +   G G
Sbjct:  114 MTFSGGYRAFNRLGIAEGSSSPYLQMSFETTATFLTEAAVRGDPDRLQSPSARIVMGQLAKQGTG 178          
BLAST of mRNA_A-nodosum_M_contig10273.10.1 vs. uniprot
Match: A0A7S1GNJ0_CYCTE (DNA-directed RNA polymerase n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GNJ0_CYCTE)

HSP 1 Score: 72.4 bits (176), Expect = 2.470e-14
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 0
Query:    1 MTFGGGYRAMNRAGMVDFSSPCLQMSFETTAGFLTRAAVAGQSDKLKSPSASIVMGHVGALGPG 64
            MTF GG++AMNR GM D SSP LQMSFETTA F+T AA+   ++ L+SPSA+IV+G     G G
Sbjct:   83 MTFDGGFKAMNRNGMNDISSPFLQMSFETTANFMTEAAMKASTEPLRSPSANIVVGRPVRHGTG 146          
BLAST of mRNA_A-nodosum_M_contig10273.10.1 vs. uniprot
Match: A0A8J2WSH6_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WSH6_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 6.140e-14
Identity = 41/62 (66.13%), Postives = 46/62 (74.19%), Query Frame = 0
Query:    1 MTFGGGYRAMNRAGMVDFSSPCLQMSFETTAGFLTRAAVAGQSDKLKSPSASIVMGHVGALG 62
            MT GGGYRAMNR  M+D SSP LQMSFETTA FLT AA +   D L+SPSASIV+G    +G
Sbjct: 1544 MTAGGGYRAMNRGAMMDHSSPYLQMSFETTASFLTSAAQSSAVDTLQSPSASIVVGQPVKVG 1605          
BLAST of mRNA_A-nodosum_M_contig10273.10.1 vs. uniprot
Match: A0A7S0PVI6_9STRA (DNA-directed RNA polymerase n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0PVI6_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 9.050e-14
Identity = 38/64 (59.38%), Postives = 48/64 (75.00%), Query Frame = 0
Query:    1 MTFGGGYRAMNRAGMVDFSSPCLQMSFETTAGFLTRAAVAGQSDKLKSPSASIVMGHVGALGPG 64
            MT+ GG++AMNR GM + SS  LQMSFETTA F+T AA+AG+ + LKSPSA+IV+G     G G
Sbjct:  178 MTYEGGFKAMNRGGMEEISSAFLQMSFETTAAFMTNAALAGRKEYLKSPSANIVLGQPMKHGTG 241          
BLAST of mRNA_A-nodosum_M_contig10273.10.1 vs. uniprot
Match: A0A1E7FJU9_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FJU9_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 2.140e-13
Identity = 40/64 (62.50%), Postives = 46/64 (71.88%), Query Frame = 0
Query:    1 MTFGGGYRAMNRAGMVDFSSPCLQMSFETTAGFLTRAAVAGQSDKLKSPSASIVMGHVGALGPG 64
            MTFGG Y AMNR GM   SSP LQMSFETTA FLT+AA+ G SD++ SPS++IV G     G G
Sbjct: 1605 MTFGGDYTAMNRNGMQTMSSPFLQMSFETTAQFLTQAALTGSSDEMNSPSSNIVAGRPIRHGTG 1668          
BLAST of mRNA_A-nodosum_M_contig10273.10.1 vs. uniprot
Match: A0A2H9TQD1_9FUNG (DNA-directed RNA polymerase subunit n=1 Tax=Paramicrosporidium saccamoebae TaxID=1246581 RepID=A0A2H9TQD1_9FUNG)

HSP 1 Score: 72.4 bits (176), Expect = 3.990e-13
Identity = 40/64 (62.50%), Postives = 45/64 (70.31%), Query Frame = 0
Query:    1 MTFGGGYRAMNRAGMVDFSSPCLQMSFETTAGFLTRAAVAGQSDKLKSPSASIVMGHVGALGPG 64
            MT GGGYR  NR GM    SP LQM+FETT GFL +AA+ G+ D LKSPS+ IVMG   ALG G
Sbjct: 1533 MTCGGGYRPFNRMGMSTAPSPLLQMTFETTLGFLRQAALVGEWDDLKSPSSRIVMGLPVALGTG 1596          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10273.10.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJ16_9PHAE5.640e-2173.44DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
D7FNY3_ECTSI1.400e-2073.44DNA-directed RNA polymerase n=1 Tax=Ectocarpus sil... [more]
A0A836C8M0_9STRA8.800e-1768.75DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
A0A7R9ZT77_9STRA2.290e-1665.63DNA-directed RNA polymerase n=1 Tax=Craspedostauro... [more]
A0A7S2G4R6_9STRA4.660e-1564.62DNA-directed RNA polymerase n=1 Tax=Florenciella p... [more]
A0A7S1GNJ0_CYCTE2.470e-1459.38DNA-directed RNA polymerase n=1 Tax=Cyclophora ten... [more]
A0A8J2WSH6_9STRA6.140e-1466.13DNA-directed RNA polymerase subunit n=1 Tax=Pelago... [more]
A0A7S0PVI6_9STRA9.050e-1459.38DNA-directed RNA polymerase n=1 Tax=Asterionellops... [more]
A0A1E7FJU9_9STRA2.140e-1362.50DNA-directed RNA polymerase subunit n=1 Tax=Fragil... [more]
A0A2H9TQD1_9FUNG3.990e-1362.50DNA-directed RNA polymerase subunit n=1 Tax=Parami... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.150.390coord: 23..65
e-value: 4.7E-9
score: 38.0
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 1..67

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10273contigA-nodosum_M_contig10273:15359..15583 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10273.10.1mRNA_A-nodosum_M_contig10273.10.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig10273 15264..15736 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig10273.10.1 ID=prot_A-nodosum_M_contig10273.10.1|Name=mRNA_A-nodosum_M_contig10273.10.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=75bp
MTFGGGYRAMNRAGMVDFSSPCLQMSFETTAGFLTRAAVAGQSDKLKSPS
ASIVMGHVGALGPGCSTFSSRRKY*
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