mRNA_A-nodosum_M_contig10273.10.1 (mRNA) Ascophyllum nodosum dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig10273.10.1 vs. uniprot
Match: D7FNY3_ECTSI (DNA-directed RNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY3_ECTSI) HSP 1 Score: 148 bits (374), Expect = 8.280e-39 Identity = 75/95 (78.95%), Postives = 81/95 (85.26%), Query Frame = 3 Query: 3 ARASIVAEITGVFGAYGISVDPQHLGLVADRMTFGGGYRAMNRAGMVDFSSPCLQMSFETTAGFLTRAAVAGQSDKLKSPSASIVMGHVGALGPG 287 ARASIVAEITGVFGAYGI+VDP+HLGLVAD MTF GGYR +NRAGM DFSSPCLQMSFETT F+ +AAVA SD+LKSPSA IVMG VG G G Sbjct: 537 ARASIVAEITGVFGAYGIAVDPRHLGLVADHMTFDGGYRPLNRAGMADFSSPCLQMSFETTTDFMAKAAVARSSDRLKSPSARIVMGRVGNFGTG 631
BLAST of mRNA_A-nodosum_M_contig10273.10.1 vs. uniprot
Match: A0A6H5KJ16_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ16_9PHAE) HSP 1 Score: 148 bits (374), Expect = 1.920e-38 Identity = 74/95 (77.89%), Postives = 82/95 (86.32%), Query Frame = 3 Query: 3 ARASIVAEITGVFGAYGISVDPQHLGLVADRMTFGGGYRAMNRAGMVDFSSPCLQMSFETTAGFLTRAAVAGQSDKLKSPSASIVMGHVGALGPG 287 ARASIV+EITGVFGAYGI+VDP+HLGLVAD MTF GGYR +NRAGM DFSSPCLQMSFETT F+ +AAVA SD+LKSPSA IVMG VG+ G G Sbjct: 1766 ARASIVSEITGVFGAYGIAVDPRHLGLVADHMTFDGGYRPLNRAGMADFSSPCLQMSFETTTDFMAKAAVARSSDRLKSPSARIVMGRVGSFGTG 1860
BLAST of mRNA_A-nodosum_M_contig10273.10.1 vs. uniprot
Match: A0A7R9ZT77_9STRA (DNA-directed RNA polymerase n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZT77_9STRA) HSP 1 Score: 115 bits (289), Expect = 3.730e-30 Identity = 61/95 (64.21%), Postives = 73/95 (76.84%), Query Frame = 3 Query: 3 ARASIVAEITGVFGAYGISVDPQHLGLVADRMTFGGGYRAMNRAGMVDFSSPCLQMSFETTAGFLTRAAVAGQSDKLKSPSASIVMGHVGALGPG 287 AR +IV ++ VFGAYGI VDP+HL L+AD MT+ GGY AMNR GM D SSP LQMSFETTA FLT+AA++G D+LKSPSA+IV+G G G Sbjct: 46 ARNNIVDQVRSVFGAYGIEVDPRHLTLIADYMTYSGGYTAMNRIGMKDTSSPFLQMSFETTATFLTQAALSGTCDQLKSPSANIVVGRPIRHGTG 140
BLAST of mRNA_A-nodosum_M_contig10273.10.1 vs. uniprot
Match: A0A7S2G4R6_9STRA (DNA-directed RNA polymerase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G4R6_9STRA) HSP 1 Score: 115 bits (287), Expect = 2.520e-29 Identity = 61/96 (63.54%), Postives = 71/96 (73.96%), Query Frame = 3 Query: 3 ARASIVAEITGVFGAYGISVDPQHLGLVADRMTFGGGYRAMNRAGMVD-FSSPCLQMSFETTAGFLTRAAVAGQSDKLKSPSASIVMGHVGALGPG 287 AR +IVAE+ GVF YGIS+D +HL L+AD MTF GGYRA NR G+ + SSP LQMSFETTA FLT AAV G D+L+SPSA IVMG + G G Sbjct: 83 ARGAIVAEVRGVFDVYGISIDARHLSLIADTMTFSGGYRAFNRLGIAEGSSSPYLQMSFETTATFLTEAAVRGDPDRLQSPSARIVMGQLAKQGTG 178
BLAST of mRNA_A-nodosum_M_contig10273.10.1 vs. uniprot
Match: A0A7S1GNJ0_CYCTE (DNA-directed RNA polymerase n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GNJ0_CYCTE) HSP 1 Score: 114 bits (284), Expect = 2.660e-29 Identity = 59/95 (62.11%), Postives = 72/95 (75.79%), Query Frame = 3 Query: 3 ARASIVAEITGVFGAYGISVDPQHLGLVADRMTFGGGYRAMNRAGMVDFSSPCLQMSFETTAGFLTRAAVAGQSDKLKSPSASIVMGHVGALGPG 287 AR +IV +I VFGAYGISVDP+HL L+AD MTF GG++AMNR GM D SSP LQMSFETTA F+T AA+ ++ L+SPSA+IV+G G G Sbjct: 52 ARNNIVEQIRSVFGAYGISVDPRHLSLIADYMTFDGGFKAMNRNGMNDISSPFLQMSFETTANFMTEAAMKASTEPLRSPSANIVVGRPVRHGTG 146
BLAST of mRNA_A-nodosum_M_contig10273.10.1 vs. uniprot
Match: W7TZA0_9STRA (DNA-directed RNA polymerase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TZA0_9STRA) HSP 1 Score: 119 bits (298), Expect = 3.140e-28 Identity = 62/95 (65.26%), Postives = 74/95 (77.89%), Query Frame = 3 Query: 3 ARASIVAEITGVFGAYGISVDPQHLGLVADRMTFGGGYRAMNRAGMVDFSSPCLQMSFETTAGFLTRAAVAGQSDKLKSPSASIVMGHVGALGPG 287 ARA+IV EI GVFGAYGI+VDP+HLGLVAD MT+ GG+RA+NR GM + SSP LQMSFETTA FLT AA+ + D L++PSA +VMG G G Sbjct: 1155 ARATIVKEIKGVFGAYGIAVDPRHLGLVADFMTYQGGFRALNRIGMSEVSSPFLQMSFETTATFLTEAALNSEKDDLQTPSAKLVMGQPTGNGTG 1249
BLAST of mRNA_A-nodosum_M_contig10273.10.1 vs. uniprot
Match: A0A836C8M0_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8M0_9STRA) HSP 1 Score: 119 bits (298), Expect = 3.200e-28 Identity = 62/94 (65.96%), Postives = 70/94 (74.47%), Query Frame = 3 Query: 6 RASIVAEITGVFGAYGISVDPQHLGLVADRMTFGGGYRAMNRAGMVDFSSPCLQMSFETTAGFLTRAAVAGQSDKLKSPSASIVMGHVGALGPG 287 RA+I EI VF YGI VD +HLGL+AD MTF GGYRAMNR GM D +SP LQMSFETTA FL +AA+ + +KLKSPSA IVMG VG G G Sbjct: 1558 RAAITKEIAAVFAVYGIGVDARHLGLIADYMTFYGGYRAMNRIGMKDIASPFLQMSFETTASFLVQAALDSKVEKLKSPSARIVMGQVGDFGTG 1651
BLAST of mRNA_A-nodosum_M_contig10273.10.1 vs. uniprot
Match: K8YRY5_NANGC (DNA-directed RNA polymerase subunit n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YRY5_NANGC) HSP 1 Score: 119 bits (298), Expect = 3.220e-28 Identity = 62/95 (65.26%), Postives = 74/95 (77.89%), Query Frame = 3 Query: 3 ARASIVAEITGVFGAYGISVDPQHLGLVADRMTFGGGYRAMNRAGMVDFSSPCLQMSFETTAGFLTRAAVAGQSDKLKSPSASIVMGHVGALGPG 287 ARA+IV EI GVFGAYGI+VDP+HLGLVAD MT+ GG+RA+NR GM + SSP LQMSFETTA FLT AA+ + D L++PSA +VMG G G Sbjct: 1745 ARATIVKEIKGVFGAYGIAVDPRHLGLVADFMTYQGGFRALNRIGMSEVSSPFLQMSFETTATFLTEAALNSEKDDLQTPSAKLVMGQPTGNGTG 1839
BLAST of mRNA_A-nodosum_M_contig10273.10.1 vs. uniprot
Match: A0A7S0PVI6_9STRA (DNA-directed RNA polymerase n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0PVI6_9STRA) HSP 1 Score: 112 bits (281), Expect = 8.280e-28 Identity = 58/95 (61.05%), Postives = 72/95 (75.79%), Query Frame = 3 Query: 3 ARASIVAEITGVFGAYGISVDPQHLGLVADRMTFGGGYRAMNRAGMVDFSSPCLQMSFETTAGFLTRAAVAGQSDKLKSPSASIVMGHVGALGPG 287 AR +IV +I VFGAYGI VDP+HL L+AD MT+ GG++AMNR GM + SS LQMSFETTA F+T AA+AG+ + LKSPSA+IV+G G G Sbjct: 147 ARNNIVEQIRSVFGAYGIEVDPRHLSLIADYMTYEGGFKAMNRGGMEEISSAFLQMSFETTAAFMTNAALAGRKEYLKSPSANIVLGQPMKHGTG 241
BLAST of mRNA_A-nodosum_M_contig10273.10.1 vs. uniprot
Match: A0A8J2WSH6_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WSH6_9STRA) HSP 1 Score: 117 bits (294), Expect = 1.100e-27 Identity = 60/93 (64.52%), Postives = 71/93 (76.34%), Query Frame = 3 Query: 3 ARASIVAEITGVFGAYGISVDPQHLGLVADRMTFGGGYRAMNRAGMVDFSSPCLQMSFETTAGFLTRAAVAGQSDKLKSPSASIVMGHVGALG 281 ARA+I+ E+TGVFG YGI ++P HL L+AD MT GGGYRAMNR M+D SSP LQMSFETTA FLT AA + D L+SPSASIV+G +G Sbjct: 1513 ARATIIQEVTGVFGVYGIDIEPHHLSLIADFMTAGGGYRAMNRGAMMDHSSPYLQMSFETTASFLTSAAQSSAVDTLQSPSASIVVGQPVKVG 1605 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10273.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig10273.10.1 >prot_A-nodosum_M_contig10273.10.1 ID=prot_A-nodosum_M_contig10273.10.1|Name=mRNA_A-nodosum_M_contig10273.10.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=75bp MTFGGGYRAMNRAGMVDFSSPCLQMSFETTAGFLTRAAVAGQSDKLKSPSback to top mRNA from alignment at A-nodosum_M_contig10273:15264..15736+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig10273.10.1 ID=mRNA_A-nodosum_M_contig10273.10.1|Name=mRNA_A-nodosum_M_contig10273.10.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=473bp|location=Sequence derived from alignment at A-nodosum_M_contig10273:15264..15736+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig10273:15264..15736+ >mRNA_A-nodosum_M_contig10273.10.1 ID=mRNA_A-nodosum_M_contig10273.10.1|Name=mRNA_A-nodosum_M_contig10273.10.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=225bp|location=Sequence derived from alignment at A-nodosum_M_contig10273:15264..15736+ (Ascophyllum nodosum dioecious)back to top |