mRNA_A-nodosum_M_contig1027.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1027.3.1
Unique NamemRNA_A-nodosum_M_contig1027.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1027.3.1 vs. uniprot
Match: D7G4B4_ECTSI (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4B4_ECTSI)

HSP 1 Score: 266 bits (679), Expect = 3.300e-79
Identity = 138/290 (47.59%), Postives = 181/290 (62.41%), Query Frame = 2
Query:  500 MTGRHMLLRVEEDMSMGKIFETFAACNELPAKDLRFWLNGETIPLAETPRTLGLQDGAEIRVILRLTGGKPVILLYPPTQLEASVHLELSSDWSFSVLYPKPLLRGPPRSDDTLSTFQVRCSKEGSESETCVWRVRASPDGSLMDLETGKDYPYLFWEAQSKDGRLAQKFKLEETPSFCVPGVQAGEFLDDALTRLGLSVRERCDMITYWLPQLEAYPFNVIYFVDVQHYGQTAKLQIFPGPDVVIRVFMAFRGTNTYEAREVCAELSNLQAPAREGFVAVEWGGMNLNG 1369
            +TG+   +R     ++  + +       +P +  R    G+      T R   +++G+   ++L L   KPVILLYPP  ++ +V +ELS  WSFS LYPK     P       + ++       +  + C W V ASP GSL DL TG++YPYLFWEA S DGR+ + F L+ + SFCV G  AG FLD AL RLGL+VRERCDM+T WLPQLE+  FNVIYFV+V+ Y Q A+L I P PDV IRVFMAFRG + Y+A    A++  L++PAREGFVAVEWGGMNLNG
Sbjct:  165 LTGKQHTIRAFPSETVLDVKKKVQDTQGIPCEQQRIIYAGQQTSDDRTLRDCNIRNGSVAHLVLSLR--KPVILLYPPAPVDITVAVELSPLWSFSSLYPK---LQPRNLKQLAADYEAGSQANVAGGQQCKWNVHASPGGSLKDLSTGREYPYLFWEADSSDGRVTRSFGLDGSRSFCVAGEAAGVFLDVALERLGLNVRERCDMVTCWLPQLESSRFNVIYFVEVERYEQAARLTIVPTPDVTIRVFMAFRGAHAYDAELDTAKIEELRSPAREGFVAVEWGGMNLNG 449          
BLAST of mRNA_A-nodosum_M_contig1027.3.1 vs. uniprot
Match: A0A8H4VHY2_9AGAR (Ubiquitin-like domain-containing protein n=1 Tax=Agrocybe pediades TaxID=84607 RepID=A0A8H4VHY2_9AGAR)

HSP 1 Score: 158 bits (400), Expect = 9.430e-40
Identity = 114/361 (31.58%), Postives = 156/361 (43.21%), Query Frame = 2
Query:  395 DVAGNGASSNLETTPSERIKKHECTMQGITVIFTFMTGRHMLLRVEEDMSMGKIFETFAACNELPA--KDLRFWLNGETIPLAETPRTLGLQDGAEIRVILRLTGGKPVILLYPPTQLEASVHLELSSDWSFSVLYPKPLLRGPPRSDDTLSTFQVRCSKEGSESETCVWRVRASPDGSLMDLETGKDYPYLFWEAQSKDGRLAQKFK----------------LEETPSFCVPGVQAGEFLDDALTRLGLSVRERCDMITYWLPQLEAYPFNVIYFVDVQHYGQTAKLQIFPGPDVVIRVFMAFRGTNTYEAREVCAELSNLQAPAREG--------------------FVAVEWGGMNL 1363
            +V     SSN +  P    +K E     I V  T++    ++ +V+E + + K+ + F  C  +    ++ RF   G  I   +T  ++GLQDG EI V  R  GGKPVI L+ P  +EASV L L+  W FS +YP   +  P                E +  +   WRV+   +G L +L TG D  YLFWEA +  G  A K                  L +  S  +P  +   +LD AL  LGL    R   ITYWLP +  +      FV    Y Q A L + P PDVV RVFM F+G    E     ++ +N  A  RE                     F  VEWGGM +
Sbjct:   27 EVEAGNISSNSDVMPLTPPEKRE-----IRVTVTYL-DHSVVFKVKEHVVLSKVMKAF--CKRIGGCEQEYRFSYYGNVIMRYDTSASIGLQDGDEIIVQPRQVGGKPVIYLFSPLPVEASVKLALAPQWDFSAIYPVVSIEKP--------------GVEQAHHQEVTWRVQTQSNGDLKELNTGLDVAYLFWEAHTNPGSAAPKVSNAREGSIEAFNPNAALLNDDNSVVLPVSKVTPYLDQALHALGLHTEARTSFITYWLPSILKHTNIAFRFVPQASYEQAAPLTVSPAPDVVSRVFMVFQGVTDEEV----SQWANATAKVREDVSFWQTVVGIDRERTLDASLFRVVEWGGMEV 361          
BLAST of mRNA_A-nodosum_M_contig1027.3.1 vs. uniprot
Match: A0A7X5D8X7_9CLOT (Uncharacterized protein n=2 Tax=Bacteria TaxID=2 RepID=A0A7X5D8X7_9CLOT)

HSP 1 Score: 138 bits (347), Expect = 3.000e-34
Identity = 84/216 (38.89%), Postives = 112/216 (51.85%), Query Frame = 2
Query:  707 KPVILLYPPTQLEASVHLELSSDWSFSVLYPKPLLRGPPRSDDTLSTFQVRCSKEGSESETCVWRVRASPDGSLMDLETGKDYPYLFWEAQSKDGRLAQKFKLEETPSFCVPGVQAGEFLDDALTRLGLSVRERCDMITYWLPQLEAYPFNVIYFVDVQHYGQTAKLQIFPGPDVVIRVFMAFRGTNTYEAREVCAELSNLQAPAREGFVAVEWGG 1354
            KPVI LYP       V LEL    +  + YP              +  + R + EGS      W+V+A PDG+L DL  G++Y YLFWE           ++ +    FC+ G    EFL+DAL +LGL+ +E  D ITYWLPQ++  P+N+I F     Y +TA+L + P PD +IRVFMA+   +      V  E   L A  REGF  VEWGG
Sbjct:    5 KPVIYLYPKEPCVVEVALELEG--TVGMAYP--------------AFNEERSASEGS------WKVQADPDGTLSDLRVGREYGYLFWEGVGD-------WEPDFDRGFCIAGADTAEFLEDALRQLGLTDKEADDFITYWLPQMQGNPYNLIAFQGGA-YDRTARLTVDPQPDTIIRVFMAWMRLD----EPVVVEPQVLSAAPREGFAVVEWGG 186          
BLAST of mRNA_A-nodosum_M_contig1027.3.1 vs. uniprot
Match: A0A8H6WWT2_9AGAR (Ubiquitin family protein n=2 Tax=Mycena kentingensis (nom. inval.) TaxID=1325293 RepID=A0A8H6WWT2_9AGAR)

HSP 1 Score: 142 bits (359), Expect = 2.430e-33
Identity = 98/325 (30.15%), Postives = 136/325 (41.85%), Query Frame = 2
Query:  500 MTGRHMLLRVEEDMSMGKIFETFAACNELPAKDLRFWLNGETIPLAETPRTLGLQDGAEIRVILRLTGGKPVILLYPPTQLEASVHLELSSDWSFSVLYPKPLLRGPPRSDDTLSTFQVRCSKEGSESETCVWRVRASPDGSLMDLETGKDYPYLFWEAQS--------------------KDGRLAQKFKLEETPSFCVPGVQAGEFLDDALTRLGLSVRERCDMITYWLPQLEAYPFNVIYFVDVQHYGQTAKLQIFPGPDVVIRVFMAFRGTNTYEA---------------REVCAELSNLQAPAREGFVAVEWGGMNLNG 1369
            +TGR + +  E   ++  I         LP    R   +G  +          +Q  +   ++ R+ GGKPV+ L  P +++A+V L L  DWSFS LYP   +  PP               +    ET +W VR   DG+L+D  TG +  YLFWEA++                    +    +  FK +   S  +P  +   +LD AL  LGL    R   ITYWLP L  +P  ++ F+    Y Q A L + P PDVV RVFM FRG    E                REV            E F  +EWGGM + G
Sbjct:  149 LTGRTITIPCERSDTVENIKFKIQDREGLPTNMQRLIFDGRQLEDGRMLSDYNVQRESTFHLVGRVVGGKPVVYLRAPEEVDATVRLSLVFDWSFSALYPVTSIEKPP---------------DACLHETVLWAVRTRADGTLLDKATGAEVSYLFWEAETNAPCQLSPPPSPVPGSIPAFRPAHASAAFKYDT--SVILPIARVPLYLDAALRALGLDTEARTSFITYWLPALLRHPHILLSFLPQDAYAQAAPLSVQPAPDVVTRVFMVFRGVAADEMGLWATEEEGRGAGIWREVVGVPQKEVQEDEELFRVLEWGGMEVKG 456          
BLAST of mRNA_A-nodosum_M_contig1027.3.1 vs. uniprot
Match: A0A7K3KJH3_9ACTN (Uncharacterized protein n=3 Tax=Bacteria TaxID=2 RepID=A0A7K3KJH3_9ACTN)

HSP 1 Score: 131 bits (330), Expect = 1.300e-31
Identity = 87/216 (40.28%), Postives = 108/216 (50.00%), Query Frame = 2
Query:  707 KPVILLYPPTQLEASVHLELSSDWSFSVLYPKPLLRGPPRSDDTLSTFQVRCSKEGSESETCVWRVRASPDGSLMDLETGKDYPYLFWEAQSKDGRLAQKFKLEETPSFCVPGVQAGEFLDDALTRLGLSVRERCDMITYWLPQLEAYPFNVIYFVDVQHYGQTAKLQIFPGPDVVIRVFMAFRGTNTYEAREVCAELSNLQAPAREGFVAVEWGG 1354
            KPVI LYP       V LE+    S S +YP      P    DT  T                WRV A PDG+L DL +G++  YLFWE  +        F  + +  FCV G     FL+DAL++LGL+ RE  D ITYWLP+++  P+N++ F     Y + A L I P PD VIRV MA+R         V  E   L APAR GF  VEWGG
Sbjct:   27 KPVIYLYPEQASVIDVTLEVEE--SLSCVYPAFASAQPT---DTGGT----------------WRVFAQPDGTLTDLSSGRELGYLFWEGDAG-------FSPDFSQGFCVSGDDMRAFLEDALSKLGLTDREAADFITYWLPRMQENPYNLVSFQG-DAYARVACLGIDPEPDTVIRVQMAWRPLEV----PVQIEPQELTAPARNGFTVVEWGG 209          
BLAST of mRNA_A-nodosum_M_contig1027.3.1 vs. uniprot
Match: D7FJP3_ECTSI (Ubiquitin fusion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP3_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 1.420e-31
Identity = 57/90 (63.33%), Postives = 72/90 (80.00%), Query Frame = 2
Query: 1097 VRERCDMITYWLPQLEAYPFNVIYFVDVQHYGQTAKLQIFPGPDVVIRVFMAFRGTNTYEAREVCAELSNLQAPAREGFVAVEWGGMNLN 1366
            +RERCDM+TYWLPQLE+  FNVIYFV+V+ Y + A+L I P PDV IR+FMAFRG + Y+     A++ +L+AP R+GFVAVEWGGMNLN
Sbjct:    1 MRERCDMVTYWLPQLESSAFNVIYFVNVERYEKAARLTIEPAPDVTIRIFMAFRGIDAYDKELDTAKMEDLRAPGRKGFVAVEWGGMNLN 90          
BLAST of mRNA_A-nodosum_M_contig1027.3.1 vs. uniprot
Match: D7FN69_ECTSI (Ubiquitin family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN69_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 3.660e-31
Identity = 58/85 (68.24%), Postives = 66/85 (77.65%), Query Frame = 2
Query:  890 CVWRVRASPDGSLMDLETGKDYPYLFWEAQSKDGRLAQKFKLEETPSFCVPGVQAGEFLDDALTRLGLSVRERCDMITYWLPQLE 1144
            C W V A+PDGSL D+ T ++YPYLFWEA S DG +   F LE+TPSFCV G  AG FLD AL RLGL+VRERCD+ITYWLPQLE
Sbjct:   74 CEWIVHANPDGSLTDISTSREYPYLFWEADSTDGLVCGNFGLEKTPSFCVAGNDAGLFLDVALERLGLNVRERCDVITYWLPQLE 158          
BLAST of mRNA_A-nodosum_M_contig1027.3.1 vs. uniprot
Match: A0A067SQM9_GALM3 (Ubiquitin-like domain-containing protein n=1 Tax=Galerina marginata (strain CBS 339.88) TaxID=685588 RepID=A0A067SQM9_GALM3)

HSP 1 Score: 135 bits (341), Expect = 4.490e-31
Identity = 98/341 (28.74%), Postives = 142/341 (41.64%), Query Frame = 2
Query:  446 RIKKHECTMQGITVIFTFMTGRHMLLRVEEDMSMGKIFETFAACNELPAKDLRFWLNGETIPLAETPRTLGLQDGAEIRVILRLTGGKPVILLYPPTQLEASVHLELSSDWSFSVLYPKPLLRGPPRSDDTLSTFQVRCSKEGSESETCVWRVRASPDGSLMDLETGKDYPYLFWEAQSK--------------DGRLAQKFK-----LEETPSFCVPGVQAGEFLDDALTRLGLSVRERCDMITYWLPQLEAYPFNVIYFVDVQHYGQTAKLQIFPGPDVVIRVFMAFRGTNTYEAREVCAELSNLQAPA----------------REGFVAVEWGGMNL 1363
            R+   E   + + +      G    + V       KI  +F+         L+   N   I   +T  + G++DG  I  ++   GGKPVI L+ P+ LEASV L L+  W+ S +YP   ++  PR+  T               E   WRV+  P+G L  L TG D  YLFWEA +               + R A+ F      + +  S  VP  +   +LD+AL  LGL +  R   ITYWLP +  +      F+    Y   A L++ P PDVV RVFM F+G    +  +  A  S   A                   + F  +EWGGM +
Sbjct:  102 RLPTPEMPPRKVNINIATCEGSTFSISVTPTTKFDKILNSFSDKIGKERGSLKLIYNNSRIGGYDTVESCGIEDGDTIYCLVEQLGGKPVIYLFSPSALEASVKLSLAPQWNLSAIYPVVPIK--PRTAQT--------------HEEVSWRVKVHPNGELTALVTGLDVAYLFWEAHTDATVPTSPPPSPLLGESRQAEIFNPNEAVINDENSVVVPVEKITPYLDEALCCLGLHIEARTSFITYWLPSMLKHKNIAFRFIPQASYEHAAPLEVSPSPDVVTRVFMVFQGVADEDLGQWSAATSKAGADVSWWREVVGVDLERALDEKLFRVLEWGGMEV 426          
BLAST of mRNA_A-nodosum_M_contig1027.3.1 vs. uniprot
Match: UPI001FD7C1C3 (hypothetical protein n=1 Tax=Flavonifractor sp. AGMB03687 TaxID=2785133 RepID=UPI001FD7C1C3)

HSP 1 Score: 129 bits (324), Expect = 7.330e-31
Identity = 82/219 (37.44%), Postives = 110/219 (50.23%), Query Frame = 2
Query:  707 KPVILLYPPTQLEASVHLELSSDWSFSVLYPKPLLRGPPRSDDTLSTFQVRCSKEGSESETCVWRVRASPDGSLMDLETGKDYPYLFWEAQSKDGRLAQKFKLEETPSFCVPGVQAGEFLDDALTRLGLSVRERCDMITYWLPQLEAYPFNVIYFVDVQHYGQTAKLQIFPGPDVVIRVFMAFRGTNTYEAREVCAELSNLQAPAREGFVAVEWGGMNL 1363
            KPVI LYP  + + SV L+   D +                  T  T++     +G       W V ASPDG+L D  TG+ Y  LFWE  S         + + +  FCV G     FL+DAL  LGL+ +E  + I YWLP++E  P+N+I F   + Y  +A L I P PD +IRVFMA++G +    + V  E   L AP R GF AVEWGG  +
Sbjct:   27 KPVIYLYPEEKTQVSVTLDFDGDMT-----------------STYPTYE-----DG-------WTVEASPDGTLTDPATGRQYYCLFWEGISPT-------EYDFSAGFCVAGENTAAFLEDALADLGLTEKEANEFIIYWLPKMEHNPYNLISF-QTEAYTDSAALTIDPAPDTLIRVFMAWQGLD----QPVEVEPQTLTAPNRTGFTAVEWGGAEI 204          
BLAST of mRNA_A-nodosum_M_contig1027.3.1 vs. uniprot
Match: UPI001F47E5A1 (hypothetical protein n=1 Tax=Pseudoflavonifractor phocaeensis TaxID=1870988 RepID=UPI001F47E5A1)

HSP 1 Score: 129 bits (323), Expect = 9.560e-31
Identity = 83/216 (38.43%), Postives = 110/216 (50.93%), Query Frame = 2
Query:  707 KPVILLYPPTQLEASVHLELSSDWSFSVLYPKPLLRGPPRSDDTLSTFQVRCSKEGSESETCVWRVRASPDGSLMDLETGKDYPYLFWEAQSKDGRLAQKFKLEETPSFCVPGVQAGEFLDDALTRLGLSVRERCDMITYWLPQLEAYPFNVIYFVDVQHYGQTAKLQIFPGPDVVIRVFMAFRGTNTYEAREVCAELSNLQAPAREGFVAVEWGG 1354
            KPVI LYP  + E  V +EL  D   +  YP                     S EGS      W V A+PDG+L D   GK+Y YL+WE          + + + +  FCV G     FL+DAL +LGL+ RE  + I YWLPQLE+ P+N+I F   + Y   A+L + P PD+++RVFMA++   +     V  E   L AP R GF  VEWGG
Sbjct:   27 KPVIYLYP--EEETLVTVELDYDGQLTCTYP---------------------SYEGS------WTVIAAPDGTLTD-GAGKEYNYLYWEG-------VDRTRYDFSQGFCVAGADIAAFLEDALAQLGLTRREANEFIVYWLPQLESNPYNLISFQG-EAYTSHARLSVTPAPDILLRVFMAWKPLES----PVEVEPQVLTAPERSGFTVVEWGG 200          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1027.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4B4_ECTSI3.300e-7947.59Ubiquitin-like domain-containing protein n=1 Tax=E... [more]
A0A8H4VHY2_9AGAR9.430e-4031.58Ubiquitin-like domain-containing protein n=1 Tax=A... [more]
A0A7X5D8X7_9CLOT3.000e-3438.89Uncharacterized protein n=2 Tax=Bacteria TaxID=2 R... [more]
A0A8H6WWT2_9AGAR2.430e-3330.15Ubiquitin family protein n=2 Tax=Mycena kentingens... [more]
A0A7K3KJH3_9ACTN1.300e-3140.28Uncharacterized protein n=3 Tax=Bacteria TaxID=2 R... [more]
D7FJP3_ECTSI1.420e-3163.33Ubiquitin fusion protein n=1 Tax=Ectocarpus silicu... [more]
D7FN69_ECTSI3.660e-3168.24Ubiquitin family protein n=1 Tax=Ectocarpus silicu... [more]
A0A067SQM9_GALM34.490e-3128.74Ubiquitin-like domain-containing protein n=1 Tax=G... [more]
UPI001FD7C1C37.330e-3137.44hypothetical protein n=1 Tax=Flavonifractor sp. AG... [more]
UPI001F47E5A19.560e-3138.43hypothetical protein n=1 Tax=Pseudoflavonifractor ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1027contigA-nodosum_M_contig1027:137581..140899 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G4B4
PFAMsubiquitin
Model size1731
Max annot lvl2759|Eukaryota
KEGG koko:K02977,ko:K02983,ko:K08770
KEGG Pathwayko03010,ko03320,map03010,map03320
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
Exons6
Evalue5.88e-83
EggNOG OGsCOG1552@1|root,KOG0003@2759|Eukaryota
Descriptionstructural constituent of ribosome
Cds size921
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04121,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1027.3.1prot_A-nodosum_M_contig1027.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1027 138807..140558 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866390.8078005-UTR-A-nodosum_M_contig1027:137580..1379841680866390.8078005-UTR-A-nodosum_M_contig1027:137580..137984Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1027 137581..137984 +
1680866390.8195517-UTR-A-nodosum_M_contig1027:138302..1383611680866390.8195517-UTR-A-nodosum_M_contig1027:138302..138361Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1027 138303..138361 +
1680866390.82891-UTR-A-nodosum_M_contig1027:138800..1388061680866390.82891-UTR-A-nodosum_M_contig1027:138800..138806Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1027 138801..138806 +
1680866390.8750787-UTR-A-nodosum_M_contig1027:140558..1408991680866390.8750787-UTR-A-nodosum_M_contig1027:140558..140899Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1027 140559..140899 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866390.8402472-CDS-A-nodosum_M_contig1027:138806..1391781680866390.8402472-CDS-A-nodosum_M_contig1027:138806..139178Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1027 138807..139178 +
1680866390.8490586-CDS-A-nodosum_M_contig1027:139459..1396731680866390.8490586-CDS-A-nodosum_M_contig1027:139459..139673Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1027 139460..139673 +
1680866390.8580368-CDS-A-nodosum_M_contig1027:139893..1400951680866390.8580368-CDS-A-nodosum_M_contig1027:139893..140095Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1027 139894..140095 +
1680866390.8669336-CDS-A-nodosum_M_contig1027:140425..1405581680866390.8669336-CDS-A-nodosum_M_contig1027:140425..140558Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1027 140426..140558 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1027.3.1

>prot_A-nodosum_M_contig1027.3.1 ID=prot_A-nodosum_M_contig1027.3.1|Name=mRNA_A-nodosum_M_contig1027.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=307bp
MQGITVIFTFMTGRHMLLRVEEDMSMGKIFETFAACNELPAKDLRFWLNG
ETIPLAETPRTLGLQDGAEIRVILRLTGGKPVILLYPPTQLEASVHLELS
SDWSFSVLYPKPLLRGPPRSDDTLSTFQVRCSKEGSESETCVWRVRASPD
GSLMDLETGKDYPYLFWEAQSKDGRLAQKFKLEETPSFCVPGVQAGEFLD
DALTRLGLSVRERCDMITYWLPQLEAYPFNVIYFVDVQHYGQTAKLQIFP
GPDVVIRVFMAFRGTNTYEAREVCAELSNLQAPAREGFVAVEWGGMNLNG
GGLHQY*
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mRNA from alignment at A-nodosum_M_contig1027:137581..140899+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1027.3.1 ID=mRNA_A-nodosum_M_contig1027.3.1|Name=mRNA_A-nodosum_M_contig1027.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3319bp|location=Sequence derived from alignment at A-nodosum_M_contig1027:137581..140899+ (Ascophyllum nodosum dioecious)
GGTTCATGCTCAGGCTGCTCCAGTGCCTAAGGAAAGTTCTACAGTGACTA TAGAAGATGCTACCGTGAAGAAGGAAAGTGCTGCCGTGACGAAGGAAAAC GATACCATTTCCAAGAAGAGTGCTAACGTGACCAAGGAAAGTGCAACCGC GACCAAGGAAAATGCTACCGTGACCAAGGAAAGTGCTACCGCGACCGAGG AAAGTAACAACTATAATTTACCCGTACAAATCAAGCCCGAAGAGAGTTTC GCGACACCCGTCGCCACGGCGACCGTGGATGCTTCCTCAAGGAAAAGAAA ATGCTACAGCGGACCAGCGCCAAGGGGAACTTCTTTGATCCCGAGCATCA GGTTGTCGAAAGAGTGCTGTGCGTCGAGTGATCCGGTCAACTACGACGTC GCAGGTGAGCTGAGGTGTTAAGTACGAAGAAGCATTCCTACAGGAACCGA TCGACCCAGGATAAGTCAGTAGTTTCAGGTGCTTGCGCAAAATTTCCATC GTACCCGCTGTGGGTTCCGTAGTCCTAATTCCCACGAATTTTGCTGATGT ACGATATCAGTTTATTACCATTTTGCCGTGCTTTGGAGGTAATTGACCAT GCCTATTAATAGCAATAATCAATCTGACACCGAAGGAGGACAAGGGCGTT GACTGTTTGACAAATATATTCACTTTATAACTGTAACAACGGTTATCGTA TCATCAATATTTTTGCCCCCAGGAAACGGAGCAAGTTCCAATTTGGAAAC GACACCTTCGGAGCGCATCAAAAAGCATGAGGTAAATAAAGAAGGAATTC GACAGAAGCTCACCAATGGTTTGCCTTATATGACAGCTGTCGAATGAGTA GATCACGGAACGTTTCTATTTGCTTCGTAGGTATAGCTTTTCAAGGGCGA CATGGAGGCGGGATAAACCGCCCTTTGCGGTTCACATGTCAAAGATGGCT GCTTATATTTAAACGTCAGTGCTTGCGGTTAAAATATCAAACGAGGTGAC GACGTGCTCGTGTTTTTAATACGGAAACCGTTCGTTATAAATATCGTCGT TGGCGTGTCGGCGCGTCTCGTTGCGCTTTTTCAACTCTTAATAGCGTATG TTTGTGCAGATACCATGGATGAACCCAGAGACTTACCACCATATGTACTA GAACACCATAACAGTCTATTTGTCTAATAATTATATCCCCATTCGCTTCC TGCACCCCCACGTATGGCAGTGTACCATGCAGGGTATAACTGTCATCTTC ACGTTCATGACCGGACGTCACATGCTTTTACGCGTCGAAGAAGATATGTC AATGGGAAAAATCTTCGAGACTTTTGCAGCCTGCAATGAGCTACCCGCTA AAGATCTTAGGTTCTGGTTAAACGGGGAAACAATTCCGTTAGCCGAGACC CCAAGAACGTTAGGTCTCCAGGACGGTGCTGAAATACGTGTGATACTTCG GTTAACTGGTGGGAAGCCTGTGATCCTCCTATACCCTCCAACTCAACTTG AGGCCTCGGTCCATCTAGAGCTTAGCTCCGATTGGAGCTTTTCTGTTCTC TACCCGAAGCCTCTACTGAGGGGACCGCCGAGATCGGACGACACACTGGT AAGCCACGTTATCTCCCAAGTTTGTTTTTTTTTCGATCGAGGTTTAGATA ATTATGCAACAATACTAGTATTTTGTCACCCATGTTCACCGAGAAGCTTT TATATCCTCGAGAGATAAATTTGGTGCCTAACGACTTTGGGGTATATGCT TTTGACGAGATCCAAGTACTGTGGGCACGCCTTGAAAGGCTTGTACTTCC ATCGCCGGCTTAAGGTACCGTACTTCACGTCAGTTGCACCTAATGAATCA CCGTCTAGATCGTTCTGTTTCGCATACAGTCTACCTTTCAGGTGCGGTGC AGCAAGGAAGGGAGCGAAAGCGAGACATGCGTGTGGAGGGTGAGAGCGAG CCCCGACGGCAGCTTAATGGACCTGGAGACGGGCAAGGACTACCCTTACC TTTTCTGGGAAGCACAGTCCAAGGACGGACGGTTGGCACAGAAATTCAAG CTCGAGGAAACGCCTTCTTTCTGCGTGCCGGGTGTTCAGGCTGGTGAGGC AAACGTGTCGTGGCCCAAATTTACGATCAGTTACAAGGTTATTTTTAACC ATTTTTTTCAACTTTAACCTCCTGTCTTCAGACGGTAAACATTAGGGTTC TGGCCCACAAGTTCAAACCTATCAGTAGGAGCGTTTTCTTGCGATTCTTG TCTCAGATGTTCCAACACATCACAATCTCGTGAACATCATGTGACCGACT GTAAATTGGACAGGCGAATTCCTGGACGACGCCCTTACGAGACTGGGGTT GAGCGTGCGGGAGCGCTGCGATATGATCACTTATTGGCTGCCACAGCTGG AGGCTTATCCATTCAACGTGATTTACTTCGTGGATGTCCAACATTACGGA CAGACAGCGAAGCTCCAGATTTTTCCTGGCCCTGATGTAGTCATTCGAGT GTTCATGGCATTCAGGTAGGCGGTACAATGTGCTTTACAAGGGCCCAGCA TGTCGACATCTGTGACGAAGTGGCCCTTACAACTGAGTGGTCTTCAAGAG AGGCTATACGTTTTTTTAACCGATGTAGTTATAAATAACAGGTGAATGCG ATGCAGATAAGTGTCAGCGTATTTCCAGTTTCGCTAACCGTTAAGTGAGC CTGCATAAATTTAATGACATTTTGATGATGGTTCTCCGCTAGAATGAAGT TTTAAACCAACATAAGAGAAAATAGTACGTTGTGCGCACTTATCGTTAAA AACGCGGAGGGTGGTCAATGCCTTTGTTGCTTTGCGCTTCGACAGGGGCA CAAACACCTACGAAGCTCGGGAAGTCTGTGCGGAGCTAAGCAACCTTCAA GCACCCGCCAGAGAAGGTTTTGTGGCCGTGGAGTGGGGAGGAATGAACCT CAATGGAGGCGGCTTACATCAGTATTAGGAATATTGTCTCATAAGCGTCT ATGATAGCGTCTGGCGCGGTGAGGGAGGAAATTGGCACTACGAGGTTGAT TGTTTTTTTAACCAGCCGGATGTGCTCCATTTGTCGAATGTGAAGATCAA TGTTACTTTGCTATTGGAGTCGGTGTTCTGATCTGCAGCTCTCTTCAAGA TCAATATCCCTTTACCTTAAAGTAGAGGCGGGACAACCCTCCCCAGTAGT CAGTAAAAAGCCATCGGATAAAGATTGTTGCCGTATGATGTGGTGTGGGC TTCTTCAAATGCTCAAAATCTTTTATCCTCTCGAGGCAAAAAATATCAAT TCAGAGAATGTTTTGCGAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1027:137581..140899+

>mRNA_A-nodosum_M_contig1027.3.1 ID=mRNA_A-nodosum_M_contig1027.3.1|Name=mRNA_A-nodosum_M_contig1027.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=921bp|location=Sequence derived from alignment at A-nodosum_M_contig1027:137581..140899+ (Ascophyllum nodosum dioecious)
ATGCAGGGTATAACTGTCATCTTCACGTTCATGACCGGACGTCACATGCT
TTTACGCGTCGAAGAAGATATGTCAATGGGAAAAATCTTCGAGACTTTTG
CAGCCTGCAATGAGCTACCCGCTAAAGATCTTAGGTTCTGGTTAAACGGG
GAAACAATTCCGTTAGCCGAGACCCCAAGAACGTTAGGTCTCCAGGACGG
TGCTGAAATACGTGTGATACTTCGGTTAACTGGTGGGAAGCCTGTGATCC
TCCTATACCCTCCAACTCAACTTGAGGCCTCGGTCCATCTAGAGCTTAGC
TCCGATTGGAGCTTTTCTGTTCTCTACCCGAAGCCTCTACTGAGGGGACC
GCCGAGATCGGACGACACACTGTCTACCTTTCAGGTGCGGTGCAGCAAGG
AAGGGAGCGAAAGCGAGACATGCGTGTGGAGGGTGAGAGCGAGCCCCGAC
GGCAGCTTAATGGACCTGGAGACGGGCAAGGACTACCCTTACCTTTTCTG
GGAAGCACAGTCCAAGGACGGACGGTTGGCACAGAAATTCAAGCTCGAGG
AAACGCCTTCTTTCTGCGTGCCGGGTGTTCAGGCTGGCGAATTCCTGGAC
GACGCCCTTACGAGACTGGGGTTGAGCGTGCGGGAGCGCTGCGATATGAT
CACTTATTGGCTGCCACAGCTGGAGGCTTATCCATTCAACGTGATTTACT
TCGTGGATGTCCAACATTACGGACAGACAGCGAAGCTCCAGATTTTTCCT
GGCCCTGATGTAGTCATTCGAGTGTTCATGGCATTCAGGGGCACAAACAC
CTACGAAGCTCGGGAAGTCTGTGCGGAGCTAAGCAACCTTCAAGCACCCG
CCAGAGAAGGTTTTGTGGCCGTGGAGTGGGGAGGAATGAACCTCAATGGA
GGCGGCTTACATCAGTATTAG
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