mRNA_A-nodosum_M_contig1027.3.1 (mRNA) Ascophyllum nodosum dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1027.3.1 vs. uniprot
Match: D7G4B4_ECTSI (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4B4_ECTSI) HSP 1 Score: 266 bits (679), Expect = 3.300e-79 Identity = 138/290 (47.59%), Postives = 181/290 (62.41%), Query Frame = 2 Query: 500 MTGRHMLLRVEEDMSMGKIFETFAACNELPAKDLRFWLNGETIPLAETPRTLGLQDGAEIRVILRLTGGKPVILLYPPTQLEASVHLELSSDWSFSVLYPKPLLRGPPRSDDTLSTFQVRCSKEGSESETCVWRVRASPDGSLMDLETGKDYPYLFWEAQSKDGRLAQKFKLEETPSFCVPGVQAGEFLDDALTRLGLSVRERCDMITYWLPQLEAYPFNVIYFVDVQHYGQTAKLQIFPGPDVVIRVFMAFRGTNTYEAREVCAELSNLQAPAREGFVAVEWGGMNLNG 1369 +TG+ +R ++ + + +P + R G+ T R +++G+ ++L L KPVILLYPP ++ +V +ELS WSFS LYPK P + ++ + + C W V ASP GSL DL TG++YPYLFWEA S DGR+ + F L+ + SFCV G AG FLD AL RLGL+VRERCDM+T WLPQLE+ FNVIYFV+V+ Y Q A+L I P PDV IRVFMAFRG + Y+A A++ L++PAREGFVAVEWGGMNLNG Sbjct: 165 LTGKQHTIRAFPSETVLDVKKKVQDTQGIPCEQQRIIYAGQQTSDDRTLRDCNIRNGSVAHLVLSLR--KPVILLYPPAPVDITVAVELSPLWSFSSLYPK---LQPRNLKQLAADYEAGSQANVAGGQQCKWNVHASPGGSLKDLSTGREYPYLFWEADSSDGRVTRSFGLDGSRSFCVAGEAAGVFLDVALERLGLNVRERCDMVTCWLPQLESSRFNVIYFVEVERYEQAARLTIVPTPDVTIRVFMAFRGAHAYDAELDTAKIEELRSPAREGFVAVEWGGMNLNG 449
BLAST of mRNA_A-nodosum_M_contig1027.3.1 vs. uniprot
Match: A0A8H4VHY2_9AGAR (Ubiquitin-like domain-containing protein n=1 Tax=Agrocybe pediades TaxID=84607 RepID=A0A8H4VHY2_9AGAR) HSP 1 Score: 158 bits (400), Expect = 9.430e-40 Identity = 114/361 (31.58%), Postives = 156/361 (43.21%), Query Frame = 2 Query: 395 DVAGNGASSNLETTPSERIKKHECTMQGITVIFTFMTGRHMLLRVEEDMSMGKIFETFAACNELPA--KDLRFWLNGETIPLAETPRTLGLQDGAEIRVILRLTGGKPVILLYPPTQLEASVHLELSSDWSFSVLYPKPLLRGPPRSDDTLSTFQVRCSKEGSESETCVWRVRASPDGSLMDLETGKDYPYLFWEAQSKDGRLAQKFK----------------LEETPSFCVPGVQAGEFLDDALTRLGLSVRERCDMITYWLPQLEAYPFNVIYFVDVQHYGQTAKLQIFPGPDVVIRVFMAFRGTNTYEAREVCAELSNLQAPAREG--------------------FVAVEWGGMNL 1363 +V SSN + P +K E I V T++ ++ +V+E + + K+ + F C + ++ RF G I +T ++GLQDG EI V R GGKPVI L+ P +EASV L L+ W FS +YP + P E + + WRV+ +G L +L TG D YLFWEA + G A K L + S +P + +LD AL LGL R ITYWLP + + FV Y Q A L + P PDVV RVFM F+G E ++ +N A RE F VEWGGM + Sbjct: 27 EVEAGNISSNSDVMPLTPPEKRE-----IRVTVTYL-DHSVVFKVKEHVVLSKVMKAF--CKRIGGCEQEYRFSYYGNVIMRYDTSASIGLQDGDEIIVQPRQVGGKPVIYLFSPLPVEASVKLALAPQWDFSAIYPVVSIEKP--------------GVEQAHHQEVTWRVQTQSNGDLKELNTGLDVAYLFWEAHTNPGSAAPKVSNAREGSIEAFNPNAALLNDDNSVVLPVSKVTPYLDQALHALGLHTEARTSFITYWLPSILKHTNIAFRFVPQASYEQAAPLTVSPAPDVVSRVFMVFQGVTDEEV----SQWANATAKVREDVSFWQTVVGIDRERTLDASLFRVVEWGGMEV 361
BLAST of mRNA_A-nodosum_M_contig1027.3.1 vs. uniprot
Match: A0A7X5D8X7_9CLOT (Uncharacterized protein n=2 Tax=Bacteria TaxID=2 RepID=A0A7X5D8X7_9CLOT) HSP 1 Score: 138 bits (347), Expect = 3.000e-34 Identity = 84/216 (38.89%), Postives = 112/216 (51.85%), Query Frame = 2 Query: 707 KPVILLYPPTQLEASVHLELSSDWSFSVLYPKPLLRGPPRSDDTLSTFQVRCSKEGSESETCVWRVRASPDGSLMDLETGKDYPYLFWEAQSKDGRLAQKFKLEETPSFCVPGVQAGEFLDDALTRLGLSVRERCDMITYWLPQLEAYPFNVIYFVDVQHYGQTAKLQIFPGPDVVIRVFMAFRGTNTYEAREVCAELSNLQAPAREGFVAVEWGG 1354 KPVI LYP V LEL + + YP + + R + EGS W+V+A PDG+L DL G++Y YLFWE ++ + FC+ G EFL+DAL +LGL+ +E D ITYWLPQ++ P+N+I F Y +TA+L + P PD +IRVFMA+ + V E L A REGF VEWGG Sbjct: 5 KPVIYLYPKEPCVVEVALELEG--TVGMAYP--------------AFNEERSASEGS------WKVQADPDGTLSDLRVGREYGYLFWEGVGD-------WEPDFDRGFCIAGADTAEFLEDALRQLGLTDKEADDFITYWLPQMQGNPYNLIAFQGGA-YDRTARLTVDPQPDTIIRVFMAWMRLD----EPVVVEPQVLSAAPREGFAVVEWGG 186
BLAST of mRNA_A-nodosum_M_contig1027.3.1 vs. uniprot
Match: A0A8H6WWT2_9AGAR (Ubiquitin family protein n=2 Tax=Mycena kentingensis (nom. inval.) TaxID=1325293 RepID=A0A8H6WWT2_9AGAR) HSP 1 Score: 142 bits (359), Expect = 2.430e-33 Identity = 98/325 (30.15%), Postives = 136/325 (41.85%), Query Frame = 2 Query: 500 MTGRHMLLRVEEDMSMGKIFETFAACNELPAKDLRFWLNGETIPLAETPRTLGLQDGAEIRVILRLTGGKPVILLYPPTQLEASVHLELSSDWSFSVLYPKPLLRGPPRSDDTLSTFQVRCSKEGSESETCVWRVRASPDGSLMDLETGKDYPYLFWEAQS--------------------KDGRLAQKFKLEETPSFCVPGVQAGEFLDDALTRLGLSVRERCDMITYWLPQLEAYPFNVIYFVDVQHYGQTAKLQIFPGPDVVIRVFMAFRGTNTYEA---------------REVCAELSNLQAPAREGFVAVEWGGMNLNG 1369 +TGR + + E ++ I LP R +G + +Q + ++ R+ GGKPV+ L P +++A+V L L DWSFS LYP + PP + ET +W VR DG+L+D TG + YLFWEA++ + + FK + S +P + +LD AL LGL R ITYWLP L +P ++ F+ Y Q A L + P PDVV RVFM FRG E REV E F +EWGGM + G Sbjct: 149 LTGRTITIPCERSDTVENIKFKIQDREGLPTNMQRLIFDGRQLEDGRMLSDYNVQRESTFHLVGRVVGGKPVVYLRAPEEVDATVRLSLVFDWSFSALYPVTSIEKPP---------------DACLHETVLWAVRTRADGTLLDKATGAEVSYLFWEAETNAPCQLSPPPSPVPGSIPAFRPAHASAAFKYDT--SVILPIARVPLYLDAALRALGLDTEARTSFITYWLPALLRHPHILLSFLPQDAYAQAAPLSVQPAPDVVTRVFMVFRGVAADEMGLWATEEEGRGAGIWREVVGVPQKEVQEDEELFRVLEWGGMEVKG 456
BLAST of mRNA_A-nodosum_M_contig1027.3.1 vs. uniprot
Match: A0A7K3KJH3_9ACTN (Uncharacterized protein n=3 Tax=Bacteria TaxID=2 RepID=A0A7K3KJH3_9ACTN) HSP 1 Score: 131 bits (330), Expect = 1.300e-31 Identity = 87/216 (40.28%), Postives = 108/216 (50.00%), Query Frame = 2 Query: 707 KPVILLYPPTQLEASVHLELSSDWSFSVLYPKPLLRGPPRSDDTLSTFQVRCSKEGSESETCVWRVRASPDGSLMDLETGKDYPYLFWEAQSKDGRLAQKFKLEETPSFCVPGVQAGEFLDDALTRLGLSVRERCDMITYWLPQLEAYPFNVIYFVDVQHYGQTAKLQIFPGPDVVIRVFMAFRGTNTYEAREVCAELSNLQAPAREGFVAVEWGG 1354 KPVI LYP V LE+ S S +YP P DT T WRV A PDG+L DL +G++ YLFWE + F + + FCV G FL+DAL++LGL+ RE D ITYWLP+++ P+N++ F Y + A L I P PD VIRV MA+R V E L APAR GF VEWGG Sbjct: 27 KPVIYLYPEQASVIDVTLEVEE--SLSCVYPAFASAQPT---DTGGT----------------WRVFAQPDGTLTDLSSGRELGYLFWEGDAG-------FSPDFSQGFCVSGDDMRAFLEDALSKLGLTDREAADFITYWLPRMQENPYNLVSFQG-DAYARVACLGIDPEPDTVIRVQMAWRPLEV----PVQIEPQELTAPARNGFTVVEWGG 209
BLAST of mRNA_A-nodosum_M_contig1027.3.1 vs. uniprot
Match: D7FJP3_ECTSI (Ubiquitin fusion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP3_ECTSI) HSP 1 Score: 127 bits (319), Expect = 1.420e-31 Identity = 57/90 (63.33%), Postives = 72/90 (80.00%), Query Frame = 2 Query: 1097 VRERCDMITYWLPQLEAYPFNVIYFVDVQHYGQTAKLQIFPGPDVVIRVFMAFRGTNTYEAREVCAELSNLQAPAREGFVAVEWGGMNLN 1366 +RERCDM+TYWLPQLE+ FNVIYFV+V+ Y + A+L I P PDV IR+FMAFRG + Y+ A++ +L+AP R+GFVAVEWGGMNLN Sbjct: 1 MRERCDMVTYWLPQLESSAFNVIYFVNVERYEKAARLTIEPAPDVTIRIFMAFRGIDAYDKELDTAKMEDLRAPGRKGFVAVEWGGMNLN 90
BLAST of mRNA_A-nodosum_M_contig1027.3.1 vs. uniprot
Match: D7FN69_ECTSI (Ubiquitin family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN69_ECTSI) HSP 1 Score: 128 bits (322), Expect = 3.660e-31 Identity = 58/85 (68.24%), Postives = 66/85 (77.65%), Query Frame = 2 Query: 890 CVWRVRASPDGSLMDLETGKDYPYLFWEAQSKDGRLAQKFKLEETPSFCVPGVQAGEFLDDALTRLGLSVRERCDMITYWLPQLE 1144 C W V A+PDGSL D+ T ++YPYLFWEA S DG + F LE+TPSFCV G AG FLD AL RLGL+VRERCD+ITYWLPQLE Sbjct: 74 CEWIVHANPDGSLTDISTSREYPYLFWEADSTDGLVCGNFGLEKTPSFCVAGNDAGLFLDVALERLGLNVRERCDVITYWLPQLE 158
BLAST of mRNA_A-nodosum_M_contig1027.3.1 vs. uniprot
Match: A0A067SQM9_GALM3 (Ubiquitin-like domain-containing protein n=1 Tax=Galerina marginata (strain CBS 339.88) TaxID=685588 RepID=A0A067SQM9_GALM3) HSP 1 Score: 135 bits (341), Expect = 4.490e-31 Identity = 98/341 (28.74%), Postives = 142/341 (41.64%), Query Frame = 2 Query: 446 RIKKHECTMQGITVIFTFMTGRHMLLRVEEDMSMGKIFETFAACNELPAKDLRFWLNGETIPLAETPRTLGLQDGAEIRVILRLTGGKPVILLYPPTQLEASVHLELSSDWSFSVLYPKPLLRGPPRSDDTLSTFQVRCSKEGSESETCVWRVRASPDGSLMDLETGKDYPYLFWEAQSK--------------DGRLAQKFK-----LEETPSFCVPGVQAGEFLDDALTRLGLSVRERCDMITYWLPQLEAYPFNVIYFVDVQHYGQTAKLQIFPGPDVVIRVFMAFRGTNTYEAREVCAELSNLQAPA----------------REGFVAVEWGGMNL 1363 R+ E + + + G + V KI +F+ L+ N I +T + G++DG I ++ GGKPVI L+ P+ LEASV L L+ W+ S +YP ++ PR+ T E WRV+ P+G L L TG D YLFWEA + + R A+ F + + S VP + +LD+AL LGL + R ITYWLP + + F+ Y A L++ P PDVV RVFM F+G + + A S A + F +EWGGM + Sbjct: 102 RLPTPEMPPRKVNINIATCEGSTFSISVTPTTKFDKILNSFSDKIGKERGSLKLIYNNSRIGGYDTVESCGIEDGDTIYCLVEQLGGKPVIYLFSPSALEASVKLSLAPQWNLSAIYPVVPIK--PRTAQT--------------HEEVSWRVKVHPNGELTALVTGLDVAYLFWEAHTDATVPTSPPPSPLLGESRQAEIFNPNEAVINDENSVVVPVEKITPYLDEALCCLGLHIEARTSFITYWLPSMLKHKNIAFRFIPQASYEHAAPLEVSPSPDVVTRVFMVFQGVADEDLGQWSAATSKAGADVSWWREVVGVDLERALDEKLFRVLEWGGMEV 426
BLAST of mRNA_A-nodosum_M_contig1027.3.1 vs. uniprot
Match: UPI001FD7C1C3 (hypothetical protein n=1 Tax=Flavonifractor sp. AGMB03687 TaxID=2785133 RepID=UPI001FD7C1C3) HSP 1 Score: 129 bits (324), Expect = 7.330e-31 Identity = 82/219 (37.44%), Postives = 110/219 (50.23%), Query Frame = 2 Query: 707 KPVILLYPPTQLEASVHLELSSDWSFSVLYPKPLLRGPPRSDDTLSTFQVRCSKEGSESETCVWRVRASPDGSLMDLETGKDYPYLFWEAQSKDGRLAQKFKLEETPSFCVPGVQAGEFLDDALTRLGLSVRERCDMITYWLPQLEAYPFNVIYFVDVQHYGQTAKLQIFPGPDVVIRVFMAFRGTNTYEAREVCAELSNLQAPAREGFVAVEWGGMNL 1363 KPVI LYP + + SV L+ D + T T++ +G W V ASPDG+L D TG+ Y LFWE S + + + FCV G FL+DAL LGL+ +E + I YWLP++E P+N+I F + Y +A L I P PD +IRVFMA++G + + V E L AP R GF AVEWGG + Sbjct: 27 KPVIYLYPEEKTQVSVTLDFDGDMT-----------------STYPTYE-----DG-------WTVEASPDGTLTDPATGRQYYCLFWEGISPT-------EYDFSAGFCVAGENTAAFLEDALADLGLTEKEANEFIIYWLPKMEHNPYNLISF-QTEAYTDSAALTIDPAPDTLIRVFMAWQGLD----QPVEVEPQTLTAPNRTGFTAVEWGGAEI 204
BLAST of mRNA_A-nodosum_M_contig1027.3.1 vs. uniprot
Match: UPI001F47E5A1 (hypothetical protein n=1 Tax=Pseudoflavonifractor phocaeensis TaxID=1870988 RepID=UPI001F47E5A1) HSP 1 Score: 129 bits (323), Expect = 9.560e-31 Identity = 83/216 (38.43%), Postives = 110/216 (50.93%), Query Frame = 2 Query: 707 KPVILLYPPTQLEASVHLELSSDWSFSVLYPKPLLRGPPRSDDTLSTFQVRCSKEGSESETCVWRVRASPDGSLMDLETGKDYPYLFWEAQSKDGRLAQKFKLEETPSFCVPGVQAGEFLDDALTRLGLSVRERCDMITYWLPQLEAYPFNVIYFVDVQHYGQTAKLQIFPGPDVVIRVFMAFRGTNTYEAREVCAELSNLQAPAREGFVAVEWGG 1354 KPVI LYP + E V +EL D + YP S EGS W V A+PDG+L D GK+Y YL+WE + + + + FCV G FL+DAL +LGL+ RE + I YWLPQLE+ P+N+I F + Y A+L + P PD+++RVFMA++ + V E L AP R GF VEWGG Sbjct: 27 KPVIYLYP--EEETLVTVELDYDGQLTCTYP---------------------SYEGS------WTVIAAPDGTLTD-GAGKEYNYLYWEG-------VDRTRYDFSQGFCVAGADIAAFLEDALAQLGLTRREANEFIVYWLPQLESNPYNLISFQG-EAYTSHARLSVTPAPDILLRVFMAWKPLES----PVEVEPQVLTAPERSGFTVVEWGG 200 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1027.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1027.3.1 >prot_A-nodosum_M_contig1027.3.1 ID=prot_A-nodosum_M_contig1027.3.1|Name=mRNA_A-nodosum_M_contig1027.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=307bp MQGITVIFTFMTGRHMLLRVEEDMSMGKIFETFAACNELPAKDLRFWLNGback to top mRNA from alignment at A-nodosum_M_contig1027:137581..140899+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1027.3.1 ID=mRNA_A-nodosum_M_contig1027.3.1|Name=mRNA_A-nodosum_M_contig1027.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3319bp|location=Sequence derived from alignment at A-nodosum_M_contig1027:137581..140899+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1027:137581..140899+ >mRNA_A-nodosum_M_contig1027.3.1 ID=mRNA_A-nodosum_M_contig1027.3.1|Name=mRNA_A-nodosum_M_contig1027.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=921bp|location=Sequence derived from alignment at A-nodosum_M_contig1027:137581..140899+ (Ascophyllum nodosum dioecious)back to top |