Homology
BLAST of mRNA_A-nodosum_M_contig1021.4.1 vs. uniprot
Match:
D8LNQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ5_ECTSI)
HSP 1 Score: 88.2 bits (217), Expect = 1.140e-17
Identity = 57/151 (37.75%), Postives = 78/151 (51.66%), Query Frame = 1
Query: 322 EEEFGQLSFLLGEPQVCLETSTDAAAALLEQAVSDPQKIRDKLLQLAVQLAGECQHSAPLKRWDPKDPKANTTCGKLQAQVVADVDIEAIFKRQKEQGQKGRPDDVPYVLARSVRSNLQYQAAAEIGARGGGNMAVRGKCMERAMQMFCGK 774
EE +L+ L+ + + A ALL+ A+ +P +R L + A A C PL +W D + QA ++A V I+ + RQK + +G D+VPYVLAR+VRSNLQY AA EIGA G GN RG MFC +
Sbjct: 26 EELDDELATLVADEPPRAAKQSPLATALLKTALENPGGVRSLLREQAETAAQGCGCQTPLAQWKKGDXXXXXXXXRQQAHIIAGVSIQHVLDRQKARDSEG--DNVPYVLARTVRSNLQYLAAQEIGATGQGNQCRRG--------MFCSR 166
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1021.4.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 1.14e-17 / Id = 37.75 Sequence D8LNQ5_ECTSI
Match Name E-value Identity Description
D8LNQ5_ECTSI 1.140e-17 37.75 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 1 Model size 832 Hectar predicted targeting category other localisation Exons 2 Cds size 729
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680866385.8726878-UTR-A-nodosum_M_contig1021:101796..101803 1680866385.8726878-UTR-A-nodosum_M_contig1021:101796..101803 Ascophyllum nodosum dioecious UTR A-nodosum_M_contig1021 101797..101803 - 1680866385.929318-UTR-A-nodosum_M_contig1021:102980..103076 1680866385.929318-UTR-A-nodosum_M_contig1021:102980..103076 Ascophyllum nodosum dioecious UTR A-nodosum_M_contig1021 102981..103076 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680866385.8923879-CDS-A-nodosum_M_contig1021:101803..102043 1680866385.8923879-CDS-A-nodosum_M_contig1021:101803..102043 Ascophyllum nodosum dioecious CDS A-nodosum_M_contig1021 101804..102043 - 1680866385.9135904-CDS-A-nodosum_M_contig1021:102491..102980 1680866385.9135904-CDS-A-nodosum_M_contig1021:102491..102980 Ascophyllum nodosum dioecious CDS A-nodosum_M_contig1021 102492..102980 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1021.4.1
>prot_A-nodosum_M_contig1021.4.1 ID=prot_A-nodosum_M_contig1021.4.1|Name=mRNA_A-nodosum_M_contig1021.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=243bp
MSEDEERVSKRARTNYPSEVSFGDLSKEENEHSVAQVSRCADTGACAWTE back to top mRNA from alignment at A-nodosum_M_contig1021:101797..103076-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1021.4.1 ID=mRNA_A-nodosum_M_contig1021.4.1|Name=mRNA_A-nodosum_M_contig1021.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1280bp|location=Sequence derived from alignment at A-nodosum_M_contig1021:101797..103076- (Ascophyllum nodosum dioecious)CAATAATACTACCAACGTCTCTGTCAACCTCCACGGTATCTCTGATACAT
CCACCCACGGAGCCACCCCATAGCACCAACGACGAATACTTGCGTG ATGT
CGGAAGATGAGGAAAGGGTTTCGAAGAGAGCGCGAACAAACTACCCAAGC
GAAGTGAGCTTTGGCGACCTGAGCAAAGAAGAGAACGAGCATAGTGTCGC
ACAAGTCAGCCGATGCGCAGACACCGGCGCCTGCGCTTGGACAGAAGACG
GCACCAAGCCACAGCTTCTGGGCGGTCTAGGCGAGGAGGTCGGTGGAGGC
TCCAGTTTGCAGCAGACGGCAGAAGAAGAGTTTGGTCAACTTTCTTTTCT
GTTGGGCGAGCCACAAGTTTGTTTAGAAACATCTACAGACGCGGCAGCAG
CTTTGTTGGAGCAGGCGGTCTCCGACCCGCAAAAGATTCGGGACAAGCTC
TTGCAGCTAGCAGTCCAGCTAGCTGGAGAGTGCCAGCACTCTGCACCTCT
CAAGAGGTGGGATCCTAAGGACCCCAAGGCGAATACTACGTGTGGCAAGC
TGCAGGCGCAGGTGGTAGCTGATGTCGACATCGAG GTAAGACGTTTTGTC
CTTGCACAACAACCAAAAGTACAACTGTTACATCAATACACAAAACGTAC
TGCTGTAGCTCGAGCTCGAAGCGATTGTGTGGCCTTTGTCCTCTCTCCGA
TACTATCAAACTAATAAGCGGGTTGACGCGGGACAGAGGCCGAACCTGTC
TCGCGAGGCCAAAAATTCTCATACGCAAACAGAGGTAGGGAAACAAGCAT
TTCCATTTTTCAGCTGACTATGAGCAAGACGGTCGATAATTTCCCGGTTG
ATCCATAATCTGCTGTATAAGTGATGACCATACAGATATACAGTACATTT
GTACACACAAACATGAAACACATCCACGACTGTAGTGAAGGGTCCGTACA
CCCCATCGGTCTCTCACCAGCTCACACTCGTTAGTGTAAAACAAACACAA
CTCCCGCCGACGTCTGCTGTCCATTTCTTACAGGCAATCTTCAAGCGTCA
GAAAGAACAGGGGCAGAAAGGCCGGCCGGACGATGTCCCATATGTGTTAG
CGCGCAGTGTACGTAGCAACTTGCAATACCAAGCGGCGGCGGAGATCGGG
GCGAGGGGGGGCGGTAACATGGCTGTTCGCGGCAAGTGCATGGAACGCGC
CATGCAGATGTTTTGCGGCAAGAAACAGGAGGGTATACCTCGGGCAGTAG
TGGAAGCTCTGCTGCGTTACTAA TAATGAG back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1021:101797..103076-
>mRNA_A-nodosum_M_contig1021.4.1 ID=mRNA_A-nodosum_M_contig1021.4.1|Name=mRNA_A-nodosum_M_contig1021.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=729bp|location=Sequence derived from alignment at A-nodosum_M_contig1021:101797..103076- (Ascophyllum nodosum dioecious) back to top