mRNA_A-nodosum_M_contig1021.4.1 (mRNA) Ascophyllum nodosum dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1021.4.1 vs. uniprot
Match: D8LNQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ5_ECTSI) HSP 1 Score: 88.2 bits (217), Expect = 1.140e-17 Identity = 57/151 (37.75%), Postives = 78/151 (51.66%), Query Frame = 1 Query: 322 EEEFGQLSFLLGEPQVCLETSTDAAAALLEQAVSDPQKIRDKLLQLAVQLAGECQHSAPLKRWDPKDPKANTTCGKLQAQVVADVDIEAIFKRQKEQGQKGRPDDVPYVLARSVRSNLQYQAAAEIGARGGGNMAVRGKCMERAMQMFCGK 774
EE +L+ L+ + + A ALL+ A+ +P +R L + A A C PL +W D + QA ++A V I+ + RQK + +G D+VPYVLAR+VRSNLQY AA EIGA G GN RG MFC +
Sbjct: 26 EELDDELATLVADEPPRAAKQSPLATALLKTALENPGGVRSLLREQAETAAQGCGCQTPLAQWKKGDXXXXXXXXRQQAHIIAGVSIQHVLDRQKARDSEG--DNVPYVLARTVRSNLQYLAAQEIGATGQGNQCRRG--------MFCSR 166 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1021.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1021.4.1 >prot_A-nodosum_M_contig1021.4.1 ID=prot_A-nodosum_M_contig1021.4.1|Name=mRNA_A-nodosum_M_contig1021.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=243bp MSEDEERVSKRARTNYPSEVSFGDLSKEENEHSVAQVSRCADTGACAWTEback to top mRNA from alignment at A-nodosum_M_contig1021:101797..103076- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1021.4.1 ID=mRNA_A-nodosum_M_contig1021.4.1|Name=mRNA_A-nodosum_M_contig1021.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1280bp|location=Sequence derived from alignment at A-nodosum_M_contig1021:101797..103076- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1021:101797..103076- >mRNA_A-nodosum_M_contig1021.4.1 ID=mRNA_A-nodosum_M_contig1021.4.1|Name=mRNA_A-nodosum_M_contig1021.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=729bp|location=Sequence derived from alignment at A-nodosum_M_contig1021:101797..103076- (Ascophyllum nodosum dioecious)back to top |