mRNA_A-nodosum_M_contig1021.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1021.3.1
Unique NamemRNA_A-nodosum_M_contig1021.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1021.3.1 vs. uniprot
Match: A0A6H5JUS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS2_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 2.550e-38
Identity = 65/109 (59.63%), Postives = 83/109 (76.15%), Query Frame = 1 
Query:    1 VPIAPFETSWSTTGDDRGHETRHQVPLALCWAITMHKSQGQTMDKAVVDLGKSESTAGLTFVCLSRAKRLADLLIEPMPLERLSKIGDTPTLQLRLREEVRLNALAGET 327
            VPI+P +T+W     D G + R Q+PL LCWAITMHKSQGQT+ KAV+DLG  E+  GLTFVCLSRAKRL DL++EPM  +R+  +G++PT++ RL+EEVRL  LA  T
Sbjct:  169 VPISPVDTTWQ----DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQST 273
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BLAST of mRNA_A-nodosum_M_contig1021.3.1 vs. uniprot
Match: A0A6H5JMH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH2_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 1.890e-37
Identity = 62/100 (62.00%), Postives = 77/100 (77.00%), Query Frame = 1 
Query:   28 WSTTGDDRGHETRHQVPLALCWAITMHKSQGQTMDKAVVDLGKSESTAGLTFVCLSRAKRLADLLIEPMPLERLSKIGDTPTLQLRLREEVRLNALAGET 327
            WST   D G + R Q+PL LCWAITMHKSQGQT+ KAV+DLG  E+  GLTFVCLSRAKRL DL++EPM  +R+  +G++PT++ RL+EEVRL  LA  T
Sbjct:   67 WSTGRKDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQST 166
[Close]
BLAST of mRNA_A-nodosum_M_contig1021.3.1 vs. uniprot
Match: A0A6H5KSF1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSF1_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 3.370e-37
Identity = 60/96 (62.50%), Postives = 76/96 (79.17%), Query Frame = 1 
Query:   40 GDDRGHETRHQVPLALCWAITMHKSQGQTMDKAVVDLGKSESTAGLTFVCLSRAKRLADLLIEPMPLERLSKIGDTPTLQLRLREEVRLNALAGET 327
            G+D G + R Q+PL LCWAITMHKSQGQT+ KAV+DLG  E+  GLTFVCLSRAKRL DL++EPM  +R+  +G++PT++ RL+EEVRL  LA  T
Sbjct:    7 GEDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQST 102
[Close]
BLAST of mRNA_A-nodosum_M_contig1021.3.1 vs. uniprot
Match: A0A6H5JFG8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG8_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 7.120e-37
Identity = 65/109 (59.63%), Postives = 83/109 (76.15%), Query Frame = 1 
Query:    1 VPIAPFETSWSTTGDDRGHETRHQVPLALCWAITMHKSQGQTMDKAVVDLGKSESTAGLTFVCLSRAKRLADLLIEPMPLERLSKIGDTPTLQLRLREEVRLNALAGET 327
            VPI+P +T+W     D G + R Q+PL LCWAITMHKSQGQT+ KAV+DLG  E+  GLTFVCLSRAKRL DL++EPM  +R+  +G++PT++ RL+EEVRL  LA  T
Sbjct:  343 VPISPVDTTWQ----DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQST 447
[Close]
BLAST of mRNA_A-nodosum_M_contig1021.3.1 vs. uniprot
Match: A0A6H5K4U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U7_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 9.240e-37
Identity = 65/109 (59.63%), Postives = 83/109 (76.15%), Query Frame = 1 
Query:    1 VPIAPFETSWSTTGDDRGHETRHQVPLALCWAITMHKSQGQTMDKAVVDLGKSESTAGLTFVCLSRAKRLADLLIEPMPLERLSKIGDTPTLQLRLREEVRLNALAGET 327
            VPI+P +T+W     D G + R Q+PL LCWAITMHKSQGQT+ KAV+DLG  E+  GLTFVCLSRAKRL DL++EPM  +R+  +G++PT++ RL+EEVRL  LA  T
Sbjct:   60 VPISPVDTTWQ----DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQST 164
[Close]
BLAST of mRNA_A-nodosum_M_contig1021.3.1 vs. uniprot
Match: A0A6H5KCP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP5_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 1.480e-36
Identity = 60/97 (61.86%), Postives = 77/97 (79.38%), Query Frame = 1 
Query:   37 TGDDRGHETRHQVPLALCWAITMHKSQGQTMDKAVVDLGKSESTAGLTFVCLSRAKRLADLLIEPMPLERLSKIGDTPTLQLRLREEVRLNALAGET 327
            +G+D G + R Q+PL LCWAITMHKSQGQT+ KAV+DLG  E+  GLTFVCLSRAKRL DL++EPM  +R+  +G++PT++ RL+EEVRL  LA  T
Sbjct:    4 SGEDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQST 100
[Close]
BLAST of mRNA_A-nodosum_M_contig1021.3.1 vs. uniprot
Match: A0A6H5KN08_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN08_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 3.130e-35
Identity = 60/97 (61.86%), Postives = 77/97 (79.38%), Query Frame = 1 
Query:   37 TGDDRGHETRHQVPLALCWAITMHKSQGQTMDKAVVDLGKSESTAGLTFVCLSRAKRLADLLIEPMPLERLSKIGDTPTLQLRLREEVRLNALAGET 327
            +G+D G + R Q+PL LCWAITMHKSQGQT+ KAV+DLG  E+  GLTFVCLSRAKRL DL++EPM  +R+  +G++PT++ RL+EEVRL  LA  T
Sbjct:    4 SGEDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQST 100
[Close]
BLAST of mRNA_A-nodosum_M_contig1021.3.1 vs. uniprot
Match: A0A6H5KFN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN2_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 1.970e-33
Identity = 54/87 (62.07%), Postives = 71/87 (81.61%), Query Frame = 1 
Query:   37 TGDDRGHETRHQVPLALCWAITMHKSQGQTMDKAVVDLGKSESTAGLTFVCLSRAKRLADLLIEPMPLERLSKIGDTPTLQLRLREE 297
            +G+D G + R Q+PL LCWAITMHKSQGQT+ KAV+DLG  E+  GLTFVCLSRAKRL DL++EPM  +R+  +G++PT++ RL+EE
Sbjct:    4 SGEDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEE 90
[Close]
BLAST of mRNA_A-nodosum_M_contig1021.3.1 vs. uniprot
Match: A0A6H5K214_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K214_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 4.660e-33
Identity = 58/94 (61.70%), Postives = 73/94 (77.66%), Query Frame = 1 
Query:   46 DRGHETRHQVPLALCWAITMHKSQGQTMDKAVVDLGKSESTAGLTFVCLSRAKRLADLLIEPMPLERLSKIGDTPTLQLRLREEVRLNALAGET 327
            D G + R Q+PL LCWAITMHKSQGQT+ KAV+DLG  E+  GLTFVCLSRAKRL DL++EPM  +R+  +G++ T++ RL+EEVRL  LA  T
Sbjct:    4 DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLIVEPMSFDRIGNLGNSSTMKGRLQEEVRLGELARTT 97
[Close]
BLAST of mRNA_A-nodosum_M_contig1021.3.1 vs. uniprot
Match: A0A6H5L976_9PHAE (ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L976_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 4.870e-33
Identity = 63/114 (55.26%), Postives = 83/114 (72.81%), Query Frame = 1 
Query:    1 VPIAPFETSWSTTGDDRGHETRHQVPLALCWAITMHKSQGQTMDKAVVDLGKSESTAGLTFVCLSRAKRLADLLIEPMPLERLSKIGDTPTLQLRLREEV-----RLNALAGET 327
            VPI+P +T+W     D G + R Q+PL LCWAITMHKSQGQT+ KAV+DLG  E+  GLTFVCLSRAKRL DL++EPM  +R+  +G++PT++ RL+EE      R NA+  E+
Sbjct: 1474 VPISPVDTTWQ----DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEASDALDRQNAIFDES 1583
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1021.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUS2_9PHAE2.550e-3859.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMH2_9PHAE1.890e-3762.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSF1_9PHAE3.370e-3762.50Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFG8_9PHAE7.120e-3759.63Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K4U7_9PHAE9.240e-3759.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCP5_9PHAE1.480e-3661.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KN08_9PHAE3.130e-3561.86Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KFN2_9PHAE1.970e-3362.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K214_9PHAE4.660e-3361.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L976_9PHAE4.870e-3355.26ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1021contigA-nodosum_M_contig1021:19589..19942 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog400682.PAC_15726636
PFAMsHerpes_Helicase,PIF1
Model size354
Max annot lvl2759|Eukaryota
KEGG koko:K15255
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.78e-25
EggNOG OGsCOG0507@1|root,KOG0987@2759|Eukaryota,3A1N8@33154|Opisthokonta,3BR8V@33208|Metazoa
EC3.6.4.12
DescriptionG-quadruplex DNA unwinding
Cds size354
COG categoryL
BRITEko00000,ko01000,ko03029,ko03032
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866385.827006-CDS-A-nodosum_M_contig1021:19588..199421680866385.827006-CDS-A-nodosum_M_contig1021:19588..19942Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1021 19589..19942 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1021.3.1prot_A-nodosum_M_contig1021.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1021 19589..19942 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1021.3.1

>prot_A-nodosum_M_contig1021.3.1 ID=prot_A-nodosum_M_contig1021.3.1|Name=mRNA_A-nodosum_M_contig1021.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=118bp
VPIAPFETSWSTTGDDRGHETRHQVPLALCWAITMHKSQGQTMDKAVVDL
GKSESTAGLTFVCLSRAKRLADLLIEPMPLERLSKIGDTPTLQLRLREEV
RLNALAGETLRLHGGVE*
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mRNA from alignment at A-nodosum_M_contig1021:19589..19942+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1021.3.1 ID=mRNA_A-nodosum_M_contig1021.3.1|Name=mRNA_A-nodosum_M_contig1021.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=354bp|location=Sequence derived from alignment at A-nodosum_M_contig1021:19589..19942+ (Ascophyllum nodosum dioecious)
GTACCCATCGCGCCCTTTGAGACGTCCTGGAGTACCACGGGTGACGACAG
AGGCCACGAGACACGTCACCAAGTACCCCTCGCCCTGTGCTGGGCGATAA
CCATGCACAAGAGCCAAGGACAGACGATGGACAAGGCCGTCGTCGACCTG
GGAAAGTCCGAGTCTACAGCGGGATTGACCTTCGTGTGTCTCAGCCGCGC
TAAGCGCCTTGCGGATCTCCTAATAGAGCCCATGCCTTTAGAGAGGCTTT
CGAAAATCGGCGATACTCCGACATTACAGCTGCGGTTGCGCGAAGAAGTG
CGCCTTAACGCTCTTGCAGGGGAGACTCTTAGGCTGCACGGGGGTGTAGA
GTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1021:19589..19942+

>mRNA_A-nodosum_M_contig1021.3.1 ID=mRNA_A-nodosum_M_contig1021.3.1|Name=mRNA_A-nodosum_M_contig1021.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=354bp|location=Sequence derived from alignment at A-nodosum_M_contig1021:19589..19942+ (Ascophyllum nodosum dioecious)
GTACCCATCGCGCCCTTTGAGACGTCCTGGAGTACCACGGGTGACGACAG
AGGCCACGAGACACGTCACCAAGTACCCCTCGCCCTGTGCTGGGCGATAA
CCATGCACAAGAGCCAAGGACAGACGATGGACAAGGCCGTCGTCGACCTG
GGAAAGTCCGAGTCTACAGCGGGATTGACCTTCGTGTGTCTCAGCCGCGC
TAAGCGCCTTGCGGATCTCCTAATAGAGCCCATGCCTTTAGAGAGGCTTT
CGAAAATCGGCGATACTCCGACATTACAGCTGCGGTTGCGCGAAGAAGTG
CGCCTTAACGCTCTTGCAGGGGAGACTCTTAGGCTGCACGGGGGTGTAGA
GTGA
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