mRNA_A-nodosum_M_contig1021.3.1 (mRNA) Ascophyllum nodosum dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1021.3.1 vs. uniprot
Match: A0A6H5JUS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS2_9PHAE) HSP 1 Score: 139 bits (350), Expect = 2.550e-38 Identity = 65/109 (59.63%), Postives = 83/109 (76.15%), Query Frame = 1 Query: 1 VPIAPFETSWSTTGDDRGHETRHQVPLALCWAITMHKSQGQTMDKAVVDLGKSESTAGLTFVCLSRAKRLADLLIEPMPLERLSKIGDTPTLQLRLREEVRLNALAGET 327
VPI+P +T+W D G + R Q+PL LCWAITMHKSQGQT+ KAV+DLG E+ GLTFVCLSRAKRL DL++EPM +R+ +G++PT++ RL+EEVRL LA T
Sbjct: 169 VPISPVDTTWQ----DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQST 273
BLAST of mRNA_A-nodosum_M_contig1021.3.1 vs. uniprot
Match: A0A6H5JMH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH2_9PHAE) HSP 1 Score: 134 bits (336), Expect = 1.890e-37 Identity = 62/100 (62.00%), Postives = 77/100 (77.00%), Query Frame = 1 Query: 28 WSTTGDDRGHETRHQVPLALCWAITMHKSQGQTMDKAVVDLGKSESTAGLTFVCLSRAKRLADLLIEPMPLERLSKIGDTPTLQLRLREEVRLNALAGET 327
WST D G + R Q+PL LCWAITMHKSQGQT+ KAV+DLG E+ GLTFVCLSRAKRL DL++EPM +R+ +G++PT++ RL+EEVRL LA T
Sbjct: 67 WSTGRKDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQST 166
BLAST of mRNA_A-nodosum_M_contig1021.3.1 vs. uniprot
Match: A0A6H5KSF1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSF1_9PHAE) HSP 1 Score: 131 bits (329), Expect = 3.370e-37 Identity = 60/96 (62.50%), Postives = 76/96 (79.17%), Query Frame = 1 Query: 40 GDDRGHETRHQVPLALCWAITMHKSQGQTMDKAVVDLGKSESTAGLTFVCLSRAKRLADLLIEPMPLERLSKIGDTPTLQLRLREEVRLNALAGET 327
G+D G + R Q+PL LCWAITMHKSQGQT+ KAV+DLG E+ GLTFVCLSRAKRL DL++EPM +R+ +G++PT++ RL+EEVRL LA T
Sbjct: 7 GEDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQST 102
BLAST of mRNA_A-nodosum_M_contig1021.3.1 vs. uniprot
Match: A0A6H5JFG8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG8_9PHAE) HSP 1 Score: 139 bits (350), Expect = 7.120e-37 Identity = 65/109 (59.63%), Postives = 83/109 (76.15%), Query Frame = 1 Query: 1 VPIAPFETSWSTTGDDRGHETRHQVPLALCWAITMHKSQGQTMDKAVVDLGKSESTAGLTFVCLSRAKRLADLLIEPMPLERLSKIGDTPTLQLRLREEVRLNALAGET 327
VPI+P +T+W D G + R Q+PL LCWAITMHKSQGQT+ KAV+DLG E+ GLTFVCLSRAKRL DL++EPM +R+ +G++PT++ RL+EEVRL LA T
Sbjct: 343 VPISPVDTTWQ----DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQST 447
BLAST of mRNA_A-nodosum_M_contig1021.3.1 vs. uniprot
Match: A0A6H5K4U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U7_9PHAE) HSP 1 Score: 139 bits (350), Expect = 9.240e-37 Identity = 65/109 (59.63%), Postives = 83/109 (76.15%), Query Frame = 1 Query: 1 VPIAPFETSWSTTGDDRGHETRHQVPLALCWAITMHKSQGQTMDKAVVDLGKSESTAGLTFVCLSRAKRLADLLIEPMPLERLSKIGDTPTLQLRLREEVRLNALAGET 327
VPI+P +T+W D G + R Q+PL LCWAITMHKSQGQT+ KAV+DLG E+ GLTFVCLSRAKRL DL++EPM +R+ +G++PT++ RL+EEVRL LA T
Sbjct: 60 VPISPVDTTWQ----DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQST 164
BLAST of mRNA_A-nodosum_M_contig1021.3.1 vs. uniprot
Match: A0A6H5KCP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP5_9PHAE) HSP 1 Score: 131 bits (330), Expect = 1.480e-36 Identity = 60/97 (61.86%), Postives = 77/97 (79.38%), Query Frame = 1 Query: 37 TGDDRGHETRHQVPLALCWAITMHKSQGQTMDKAVVDLGKSESTAGLTFVCLSRAKRLADLLIEPMPLERLSKIGDTPTLQLRLREEVRLNALAGET 327
+G+D G + R Q+PL LCWAITMHKSQGQT+ KAV+DLG E+ GLTFVCLSRAKRL DL++EPM +R+ +G++PT++ RL+EEVRL LA T
Sbjct: 4 SGEDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQST 100
BLAST of mRNA_A-nodosum_M_contig1021.3.1 vs. uniprot
Match: A0A6H5KN08_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN08_9PHAE) HSP 1 Score: 131 bits (330), Expect = 3.130e-35 Identity = 60/97 (61.86%), Postives = 77/97 (79.38%), Query Frame = 1 Query: 37 TGDDRGHETRHQVPLALCWAITMHKSQGQTMDKAVVDLGKSESTAGLTFVCLSRAKRLADLLIEPMPLERLSKIGDTPTLQLRLREEVRLNALAGET 327
+G+D G + R Q+PL LCWAITMHKSQGQT+ KAV+DLG E+ GLTFVCLSRAKRL DL++EPM +R+ +G++PT++ RL+EEVRL LA T
Sbjct: 4 SGEDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQST 100
BLAST of mRNA_A-nodosum_M_contig1021.3.1 vs. uniprot
Match: A0A6H5KFN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN2_9PHAE) HSP 1 Score: 122 bits (307), Expect = 1.970e-33 Identity = 54/87 (62.07%), Postives = 71/87 (81.61%), Query Frame = 1 Query: 37 TGDDRGHETRHQVPLALCWAITMHKSQGQTMDKAVVDLGKSESTAGLTFVCLSRAKRLADLLIEPMPLERLSKIGDTPTLQLRLREE 297
+G+D G + R Q+PL LCWAITMHKSQGQT+ KAV+DLG E+ GLTFVCLSRAKRL DL++EPM +R+ +G++PT++ RL+EE
Sbjct: 4 SGEDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEE 90
BLAST of mRNA_A-nodosum_M_contig1021.3.1 vs. uniprot
Match: A0A6H5K214_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K214_9PHAE) HSP 1 Score: 123 bits (309), Expect = 4.660e-33 Identity = 58/94 (61.70%), Postives = 73/94 (77.66%), Query Frame = 1 Query: 46 DRGHETRHQVPLALCWAITMHKSQGQTMDKAVVDLGKSESTAGLTFVCLSRAKRLADLLIEPMPLERLSKIGDTPTLQLRLREEVRLNALAGET 327
D G + R Q+PL LCWAITMHKSQGQT+ KAV+DLG E+ GLTFVCLSRAKRL DL++EPM +R+ +G++ T++ RL+EEVRL LA T
Sbjct: 4 DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLIVEPMSFDRIGNLGNSSTMKGRLQEEVRLGELARTT 97
BLAST of mRNA_A-nodosum_M_contig1021.3.1 vs. uniprot
Match: A0A6H5L976_9PHAE (ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L976_9PHAE) HSP 1 Score: 131 bits (329), Expect = 4.870e-33 Identity = 63/114 (55.26%), Postives = 83/114 (72.81%), Query Frame = 1 Query: 1 VPIAPFETSWSTTGDDRGHETRHQVPLALCWAITMHKSQGQTMDKAVVDLGKSESTAGLTFVCLSRAKRLADLLIEPMPLERLSKIGDTPTLQLRLREEV-----RLNALAGET 327
VPI+P +T+W D G + R Q+PL LCWAITMHKSQGQT+ KAV+DLG E+ GLTFVCLSRAKRL DL++EPM +R+ +G++PT++ RL+EE R NA+ E+
Sbjct: 1474 VPISPVDTTWQ----DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEASDALDRQNAIFDES 1583 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1021.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1021.3.1 >prot_A-nodosum_M_contig1021.3.1 ID=prot_A-nodosum_M_contig1021.3.1|Name=mRNA_A-nodosum_M_contig1021.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=118bp VPIAPFETSWSTTGDDRGHETRHQVPLALCWAITMHKSQGQTMDKAVVDLback to top mRNA from alignment at A-nodosum_M_contig1021:19589..19942+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1021.3.1 ID=mRNA_A-nodosum_M_contig1021.3.1|Name=mRNA_A-nodosum_M_contig1021.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=354bp|location=Sequence derived from alignment at A-nodosum_M_contig1021:19589..19942+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1021:19589..19942+ >mRNA_A-nodosum_M_contig1021.3.1 ID=mRNA_A-nodosum_M_contig1021.3.1|Name=mRNA_A-nodosum_M_contig1021.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=354bp|location=Sequence derived from alignment at A-nodosum_M_contig1021:19589..19942+ (Ascophyllum nodosum dioecious)back to top |