mRNA_A-nodosum_M_contig10207.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10207.1.1
Unique NamemRNA_A-nodosum_M_contig10207.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig10207.1.1 vs. uniprot
Match: A0A6H5JYE2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYE2_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 7.990e-13
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:    4 LRTRRLLWAGTLLRMSGGRLPKRIMFGNLEGAVRRGRGGKEKEWTDCVQSDIRAFGIN 177
            +R RRLL+AG+L R   GRLPKR+MFG L G  +R RGG+E+ W  CV  D++AFG +
Sbjct:   63 IRQRRLLFAGSLARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFGAD 120
[Close]
BLAST of mRNA_A-nodosum_M_contig10207.1.1 vs. uniprot
Match: A0A6H5JAH7_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAH7_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 2.450e-12
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:    4 LRTRRLLWAGTLLRMSGGRLPKRIMFGNLEGAVRRGRGGKEKEWTDCVQSDIRAFGIN 177
            +R RRLL+AG L R   GRLPKR+MFG L G  +R RGG+E+ W  CV  D++AFG +
Sbjct:  195 IRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFGAD 252
[Close]
BLAST of mRNA_A-nodosum_M_contig10207.1.1 vs. uniprot
Match: A0A6H5JFE2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFE2_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 5.640e-12
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:    4 LRTRRLLWAGTLLRMSGGRLPKRIMFGNLEGAVRRGRGGKEKEWTDCVQSDIRAFGIN 177
            +R RRLL+AG L R   GRLPKR+MFG L G  +R RGG+E+ W  CV  D++AFG +
Sbjct:  325 IRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFGAD 382
[Close]
BLAST of mRNA_A-nodosum_M_contig10207.1.1 vs. uniprot
Match: A0A6H5JLT1_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLT1_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 5.690e-12
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:    4 LRTRRLLWAGTLLRMSGGRLPKRIMFGNLEGAVRRGRGGKEKEWTDCVQSDIRAFGIN 177
            +R RRLL+AG L R   GRLPKR+MFG L G  +R RGG+E+ W  CV  D++AFG +
Sbjct:  458 IRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFGAD 515
[Close]
BLAST of mRNA_A-nodosum_M_contig10207.1.1 vs. uniprot
Match: A0A6H5KS82_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS82_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.070e-11
Identity = 32/58 (55.17%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:    4 LRTRRLLWAGTLLRMSGGRLPKRIMFGNLEGAVRRGRGGKEKEWTDCVQSDIRAFGIN 177
            +R RRLL+AG L R   GRLPKR+MFG L G  +R RGG+E+ W  CV  D+ AFG +
Sbjct:  547 IRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLNAFGAD 604
[Close]
BLAST of mRNA_A-nodosum_M_contig10207.1.1 vs. uniprot
Match: A0A6H5K1X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X4_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 3.700e-11
Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:    4 LRTRRLLWAGTLLRMSGGRLPKRIMFGNLEGAVRRGRGGKEKEWTDCVQSDIRAFGIN 177
            +R RRLL+AG L R   GRLPKR+M G L G  +R RGG+E+ W  CV  D++AFG +
Sbjct:  219 IRQRRLLFAGALARQPDGRLPKRLMLGELAGGEKRRRGGQEQNWPKCVLDDLKAFGAD 276
[Close]
BLAST of mRNA_A-nodosum_M_contig10207.1.1 vs. uniprot
Match: A0A6H5K2V9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2V9_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 3.280e-10
Identity = 28/52 (53.85%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:   22 LWAGTLLRMSGGRLPKRIMFGNLEGAVRRGRGGKEKEWTDCVQSDIRAFGIN 177
            L+AG L R   GRLPKR+MFG L G  +R RGG+E+ W  CV  D++AFG +
Sbjct:  287 LFAGALARQPDGRLPKRLMFGELAGGEKRSRGGQEQNWPKCVLDDLKAFGAD 338
[Close]
BLAST of mRNA_A-nodosum_M_contig10207.1.1 vs. uniprot
Match: A0A6H5KQ16_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ16_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 1.210e-9
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:    4 LRTRRLLWAGTLLRMSGGRLPKRIMFGNLEGAVRRGRGGKEKEWTDCVQSDIR 162
            +R RR+L+AG L R   GRLPKR+MFG L G  +R RGG+E+ W  CV  D++
Sbjct:  195 IRQRRILFAGALTRQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLK 247
[Close]
BLAST of mRNA_A-nodosum_M_contig10207.1.1 vs. uniprot
Match: A0A6H5K2V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2V4_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 3.540e-9
Identity = 29/58 (50.00%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:    4 LRTRRLLWAGTLLRMSGGRLPKRIMFGNLEGAVRRGRGGKEKEWTDCVQSDIRAFGIN 177
            +R RRLL A  L R   GRLPKR+M G L G  +R RGG+++ W  CV  D++AFG +
Sbjct:  175 IRQRRLLLARALARQPDGRLPKRLMLGELAGGEKRRRGGQKQNWPKCVLDDLKAFGAD 232
[Close]
BLAST of mRNA_A-nodosum_M_contig10207.1.1 vs. uniprot
Match: A0A6H5JTZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTZ8_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 9.140e-9
Identity = 27/58 (46.55%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:    4 LRTRRLLWAGTLLRMSGGRLPKRIMFGNLEGAVRRGRGGKEKEWTDCVQSDIRAFGIN 177
            +R RRLL+AG + R   GRLPKR++ G L G  +R   G+E+ W  CV  D++AFG +
Sbjct:  176 IRQRRLLFAGAMARQPDGRLPKRLVLGELAGGEKRRSAGQEQNWPKCVLDDLKAFGAD 233
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10207.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYE2_9PHAE7.990e-1355.17Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JAH7_9PHAE2.450e-1255.17Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JFE2_9PHAE5.640e-1255.17Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JLT1_9PHAE5.690e-1255.17Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KS82_9PHAE1.070e-1155.17Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K1X4_9PHAE3.700e-1153.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2V9_9PHAE3.280e-1053.85Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KQ16_9PHAE1.210e-952.83Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K2V4_9PHAE3.540e-950.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTZ8_9PHAE9.140e-946.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10207contigA-nodosum_M_contig10207:7668..7883 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog6500.XP_005092354.1
PFAMsRVT_1
Model size216
Max annot lvl33208|Metazoa
Hectar predicted targeting categorysignal peptide
Exons1
Evalue3.87e-08
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,3A35Z@33154|Opisthokonta,3BQYF@33208|Metazoa,3D7GC@33213|Bilateria
DescriptionRibonuclease H protein
Cds size216
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866385.7572527-CDS-A-nodosum_M_contig10207:7667..78831680866385.7572527-CDS-A-nodosum_M_contig10207:7667..7883Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10207 7668..7883 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10207.1.1prot_A-nodosum_M_contig10207.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10207 7668..7883 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10207.1.1

>prot_A-nodosum_M_contig10207.1.1 ID=prot_A-nodosum_M_contig10207.1.1|Name=mRNA_A-nodosum_M_contig10207.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=72bp
MLRTRRLLWAGTLLRMSGGRLPKRIMFGNLEGAVRRGRGGKEKEWTDCVQ
SDIRAFGINGDWETMAVKAEVW
back to top

mRNA from alignment at A-nodosum_M_contig10207:7668..7883-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10207.1.1 ID=mRNA_A-nodosum_M_contig10207.1.1|Name=mRNA_A-nodosum_M_contig10207.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=216bp|location=Sequence derived from alignment at A-nodosum_M_contig10207:7668..7883- (Ascophyllum nodosum dioecious)
ATGTTGCGCACGAGAAGACTTTTGTGGGCGGGAACGCTCCTCCGAATGAG
CGGCGGGCGGTTGCCAAAGCGAATCATGTTCGGAAACCTTGAGGGCGCAG
TGCGTAGAGGACGGGGTGGGAAGGAGAAAGAATGGACCGACTGTGTACAG
AGCGACATCCGGGCGTTTGGCATAAATGGGGATTGGGAAACGATGGCGGT
AAAGGCTGAGGTTTGG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig10207:7668..7883-

>mRNA_A-nodosum_M_contig10207.1.1 ID=mRNA_A-nodosum_M_contig10207.1.1|Name=mRNA_A-nodosum_M_contig10207.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=216bp|location=Sequence derived from alignment at A-nodosum_M_contig10207:7668..7883- (Ascophyllum nodosum dioecious)
ATGTTGCGCACGAGAAGACTTTTGTGGGCGGGAACGCTCCTCCGAATGAG
CGGCGGGCGGTTGCCAAAGCGAATCATGTTCGGAAACCTTGAGGGCGCAG
TGCGTAGAGGACGGGGTGGGAAGGAGAAAGAATGGACCGACTGTGTACAG
AGCGACATCCGGGCGTTTGGCATAAATGGGGATTGGGAAACGATGGCGGT
AAAGGCTGAGGTTTGG
back to top