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Homology
BLAST of mRNA_A-nodosum_M_contig102.60.2 vs. uniprot
Match: A0A6H5KNU9_9PHAE (CRIM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU9_9PHAE) HSP 1 Score: 464 bits (1194), Expect = 1.160e-152 Identity = 277/438 (63.24%), Postives = 318/438 (72.60%), Query Frame = 2
Query: 758 MKKVSTGERIKFADLRRRSVGGPRGDADSDV-MSEQRFVSELMDTTPSSSYEGD-LREGLPYNAHDASVSDSPLPRYDSDGEAADEVVTGTQDGVSKTDLIVKEDVPEIPGETQQGSLLAAELAAVKISASQPNQP---ASSRQRNDTH--SDGESLMGDLRLDHGA----GGCTADQLIRSLISECKALELGSDLIQTPDMYELRMADEDWDPDLDFPGLDSCAVITDVGVDQFVLCHQAKIEPMLHVTIVLHKSLNGPLTGTGAMEAPGAGATMTLEVNFRIPGQEESHNMSIRIAHDSNQKDLVRSRDSGSRSAAASAAVSEVEEITRMESGGQEKQPGPEGIVEKTGAEEKHPAQEPTAEKETVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRNIDTGEDIELAEIDERVPPSLDPGELF-AKDVS 2035
MKKVSTGERIKFADLRRRSVG R DADSD SEQRFVSELMDTTPSSSYEG+ L +G YN D SVS+SPL RY+SDGEAADEVVT TQ+G+ K DLIVKEDVPEIP ETQQGSLLAA LAAV+I ASQ A +RQR+DT SDGESLMGD R+DHG GGCTA+QLIR+L+SECK+ +LGS+L Q D Y LRMAD+DWDPDLDFPGLDS AVITDVGVDQFVLCHQA+IEPMLH+TI LHK LNGPLTGTGAMEAPGAGA++TLEV+F+ PGQE +H+MS+ IA +S Q+DLVR RDSG R +AASA +EVE++ R G +E+ +VE+ G EE VK +RN+DTGEDI LAEI +RVPPSLDPGE+F +KDV
Sbjct: 93 MKKVSTGERIKFADLRRRSVGVSR-DADSDAAQSEQRFVSELMDTTPSSSYEGETLGDGYAYNPPDPSVSNSPLARYESDGEAADEVVTDTQEGIGKADLIVKEDVPEIPEETQQGSLLAAGLAAVQIGASQSGLGGLLAGARQRDDTMTLSDGESLMGDPRVDHGTDHGPGGCTAEQLIRALVSECKSRDLGSELTQGADKYVLRMADDDWDPDLDFPGLDSSAVITDVGVDQFVLCHQAQIEPMLHITIALHKGLNGPLTGTGAMEAPGAGASITLEVDFQTPGQEGTHHMSVPIASESGQRDLVRFRDSGVRGSAASADAAEVEKLLRTPPGNKEQ------VVEEIGIEE------------AVK----------------------------------VRNMDTGEDITLAEIKDRVPPSLDPGEVFRSKDVG 477
BLAST of mRNA_A-nodosum_M_contig102.60.2 vs. uniprot
Match: D7FJ13_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ13_ECTSI) HSP 1 Score: 223 bits (569), Expect = 1.020e-64 Identity = 131/232 (56.47%), Postives = 153/232 (65.95%), Query Frame = 2
Query: 1343 MADEDWDPDLDFPGLDSCAVITDVGVDQFVLCHQAKIEPMLHVTIVLHKSLNGPLTGTGAMEAPGAGATMTLEVNFRIPGQEESHNMSIRIAHDSNQKDLVRSRDSGSRSAAASAAVSEVEEITRMESGGQEKQPGPEGIVEKTGAEEKHPAQEPTAEKETVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRNIDTGEDIELAEIDERVPPSLDPGELF-AKDVS 2035
MAD+DWDPDLDFPGLDS AVITDVGVDQFVLCHQA+IEPMLH+TI LHK LNGPLTGTGAMEAPGAGA+MTLEV+F+ PGQE +H+MS+ IA +S Q+DLVR RDSG R +AASA +EVE++ R +EK +V + G EE VK LRN+DTGEDI LAEI +RVPPSLDPGE+F +KDV
Sbjct: 1 MADDDWDPDLDFPGLDSSAVITDVGVDQFVLCHQAQIEPMLHITIALHKGLNGPLTGTGAMEAPGAGASMTLEVDFQTPGQEGTHHMSVPIASESGQRDLVRFRDSGVRGSAASADAAEVEKLLRTPPSNKEK------VVGEIGMEE------------AVK----------------------------------LRNMDTGEDITLAEIKDRVPPSLDPGEVFRSKDVG 180
BLAST of mRNA_A-nodosum_M_contig102.60.2 vs. uniprot
Match: A0A835ZDT3_9STRA (CRIM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDT3_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 2.310e-8 Identity = 51/130 (39.23%), Postives = 71/130 (54.62%), Query Frame = 2
Query: 758 MKKVSTGERIKFADLRRRSVGGPRGDADSDVMSEQRFVSELMDTTPSSSYEGDL-REGLPYNAHDASVSDSPLPRYDSDGEAADEVVTGTQ--DGVSKTDLIVKEDVPEIPG--ETQQGSLLAAELAAVK 1132
MKK+STGER+ D+RR D+ + EQ V ELMDTTPSSS+ D R+G Y+ S P+ SD + A+ VV+G+ +G DL K +V ++P ++ SLL+ LAAVK
Sbjct: 1 MKKISTGERVNLQDIRRGIDQLRLSHTDAAIAGEQMLVEELMDTTPSSSFGEDAWRDGYIYDGAAGGAS----PKDYSDDDGAEAVVSGSYPPEGQESQDLFEKVEVAKLPDSQDSNPTSLLSGALAAVK 126
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 2462 |
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Ec32 ortholog description | Stress-activated map kinase interacting 1 |
| Ec32 ortholog | Ec-07_004820.1 |
| Cds size | 1428 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680866383.278333-UTR-A-nodosum_M_contig102:286207..286631 | 1680866383.278333-UTR-A-nodosum_M_contig102:286207..286631 | Ascophyllum nodosum dioecious | UTR | A-nodosum_M_contig102 286208..286631 - |
| 1680866383.4316618-UTR-A-nodosum_M_contig102:289719..290329 | 1680866383.4316618-UTR-A-nodosum_M_contig102:289719..290329 | Ascophyllum nodosum dioecious | UTR | A-nodosum_M_contig102 289720..290329 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680866383.2924392-CDS-A-nodosum_M_contig102:286631..287053 | 1680866383.2924392-CDS-A-nodosum_M_contig102:286631..287053 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig102 286632..287053 - |
| 1680866383.3118186-CDS-A-nodosum_M_contig102:287251..287423 | 1680866383.3118186-CDS-A-nodosum_M_contig102:287251..287423 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig102 287252..287423 - |
| 1680866383.3226004-CDS-A-nodosum_M_contig102:287612..287738 | 1680866383.3226004-CDS-A-nodosum_M_contig102:287612..287738 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig102 287613..287738 - |
| 1680866383.3304083-CDS-A-nodosum_M_contig102:288199..288268 | 1680866383.3304083-CDS-A-nodosum_M_contig102:288199..288268 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig102 288200..288268 - |
| 1680866383.3382704-CDS-A-nodosum_M_contig102:288503..288677 | 1680866383.3382704-CDS-A-nodosum_M_contig102:288503..288677 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig102 288504..288677 - |
| 1680866383.413561-CDS-A-nodosum_M_contig102:289254..289719 | 1680866383.413561-CDS-A-nodosum_M_contig102:289254..289719 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig102 289255..289719 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig102.60.2 >prot_A-nodosum_M_contig102.60.2 ID=prot_A-nodosum_M_contig102.60.2|Name=mRNA_A-nodosum_M_contig102.60.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=476bp
MPHVIYCTSDNPLCFVLGCSAAIKPEVHGRLACLVYLNGPGPEDTCVAVM KKVSTGERIKFADLRRRSVGGPRGDADSDVMSEQRFVSELMDTTPSSSYE GDLREGLPYNAHDASVSDSPLPRYDSDGEAADEVVTGTQDGVSKTDLIVK EDVPEIPGETQQGSLLAAELAAVKISASQPNQPASSRQRNDTHSDGESLM GDLRLDHGAGGCTADQLIRSLISECKALELGSDLIQTPDMYELRMADEDW DPDLDFPGLDSCAVITDVGVDQFVLCHQAKIEPMLHVTIVLHKSLNGPLT GTGAMEAPGAGATMTLEVNFRIPGQEESHNMSIRIAHDSNQKDLVRSRDS GSRSAAASAAVSEVEEITRMESGGQEKQPGPEGIVEKTGAEEKHPAQEPT AEKETVKGQEKQPGPEGIVEKTGAEEKHPAQEPTAEKETVKLRNIDTGED IELAEIDERVPPSLDPGELFAKDVS* back to topmRNA from alignment at A-nodosum_M_contig102:286208..290329- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_A-nodosum_M_contig102.60.2 ID=mRNA_A-nodosum_M_contig102.60.2|Name=mRNA_A-nodosum_M_contig102.60.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4122bp|location=Sequence derived from alignment at A-nodosum_M_contig102:286208..290329- (Ascophyllum nodosum dioecious) TCTCTTTCGCGTAACCTGGGCTCGTGCCATCTGATACAACGGTACTGTGT
GTATACGTAACAAGCATCATCAGCGAGAGGTGCGACGGGTGCTTCGCTCG
TGATGGCTCGAGCGATTTCGTTGCAGAGATGATCGACCACAATTGTAATA
AGTAGCCGACGCTTTCTCGTCAGAAATGATAATGCGTTCCCTACTTCAGG
ATAATCGTTCCCTGATCGTCATTTACTATTCTTCGACAGCGCCGAATCCC
CTTCGGATTCTACTAAAGCCCTCCTGCAGGTAGCTCTTCCCTTGGGCTAA
ACTTCCATCTCTTAAATGGCTTCCGCTTCTGCTCGTACTTGGAACCATCT
TGTGTAGAACCTAGTCCAATCGGTTCATGGATATCTGATACGAAGTACTC
GAGAATCCCTAGGTCGTATGTGATAGGTTGCAGTTTTTTCTTCTACGTGC
AATATTTGGTACAGACATTCGTACACTCGCCGAGTCTTGGGCACGGAGAG
TTGAGCCAATCTGGTTGATACATTTGTTACTTTTCTTGTTATTAATAGTC
TAATACCCCTATTAATAGCAGTATTCTGTCTCTAGACCGGTGTTTGGCAC
TCTGGCCTGCATGCCTCATGTCATTTACTGTACAAGTGATAATCCTCTGT
GTTTCGTTCTGGGATGTTCCGCGGCCATTAAGCCGGAGGTGCACGGTCGC
CTCGCATGCCTTGTGTATTTAAATGGACCAGGGCCCGAGGATACGTGCGT
GGCCGTGATGAAGAAGGTCAGCACTGGAGAAAGAATAAAATTCGCCGATC
TCCGCAGGCGAAGCGTTGGAGGGCCTCGAGGAGACGCTGACAGCGATGTC
ATGAGCGAACAGCGCTTCGTGTCGGAACTGATGGACACGACCCCTTCTTC
GTCCTACGAAGGCGACTTAAGGGAAGGCCTCCCCTACAACGCCCACGATG
CCTCGGTCTCAGACTCGCCACTCCCGAGGTACGATTCCGACGGAGAGGCA
GCCGACGAGGTTGTGACGGGTACACAGGATGGCGTCAGCAAGACCGACTT
GATCGTGAAGGAGGACGTGCCAGAGGTACAAATGTACTCGTAAAAATAAA
ATTGCAGACCTCTTGGTTCAACCTGAGCAGTCTTGTACGGTTGTTCCACT
AGAGCTCTGTGCTTGGTTGTTCGGCCTCTGGATCAGCAGACAAGTCGAGT
CGTCACTTGGGTAAGAGGCTCTCAAATCTCGAATTTTGAGGGGAGTTTCT
GTACGTGAAAAGAGTACCAGGTAGAAGATACCGGTACGGTATATCCGAAA
TATTATTTTTCCATGTTCAGCTGACCACTATATACTATAGAGCAGGATTG
GCAACTTTACCCGGTTGATCCATACATCTTCCCCTGAACGTGGTCTGAAT
AGTTTGGACGTCTTTTTAGCGAGATACTAAACCCTGTGCGTCATGTATGT
AGTGCGATTGCTGACATTTAGGGTTTGCAAAGCGCAATCGCCTGCACCGC
CGTGGTCAATTTTGATTGGTATGTACTCCTATTCAAAACTCCGAAGTGTA
AATGCCTTAAAACACCTGGCGTGACTTGCTTCATTAAAAAATGACACTGC
TTCTAAGACGCGTTACGACTACACCTTTTATTTATTTCATCCCGAAATTC
AGATTCCTGGAGAAACTCAGCAAGGTTCACTTCTGGCTGCCGAGCTAGCC
GCGGTCAAGATTAGCGCGTCTCAGCCCAACCAACCTGCTTCCTCGCGACA
ACGTAACGATACGCATAGCGACGGAGAAAGCTTAATGGGAGATCTGCGGT
TGGACCATGGCGCTGGGGGGTGTACGGTGCGTACAAGCCGTGATATTCTG
TTCCGGGCAGGGAACTACAGCGCGTTTACGACCAGCGTTGGTAATGCACC
CGCTTCTGTATTCGGAAGATTGATACACATGCCGATCTTCCTTGTGATCG
TTTTCCACGCTAACGAGTTCGACCTCCCTCCATTCTGACGACATATCTTC
TCTTCTCTTCTCTTTCGCGTCTCCACTGCTTGCGTGGCAACTACCGGAAT
CCCGTGACCAGGCCGACCAGCTGATTCGATCGTTGATATCAGAGTGTAAA
GCTCTTGAGCTTGGAAGTGACTTGATACAGGTGAGACGCTTCGACAGTAT
GGCTGGTGGTAATGTTTTCCAGCTAAGGAGCCTCGAGCACGGCTAGTTAA
AGACATTGAAAGACATTTAAGATGACTTAGCTATTACTGGTAACAGAGGG
GTAGAGCAGGGCTTTATTGTATACCAAGGTAAGAAGTTGAAAATACACGT
TGTTATATACAGAATTTTTACGGATCGTGTCAGATCTTACATGGGTTGAT
CTTTGAACCTGGTCAACCTGTTCGACGGATTCCCGATGCTCCCCAATGCT
CTAGAAATACTCGACTGCTCTGAAGTCGCCTATCAATCCGACTTCGCAAT
ATCTCTTCAAAGAATCAAGCAACCCCCAGGGCCCCAAGCAGTTACCCAAC
ATGCGGTTTACGAGCATACTAGACCATCGAATTTATGGTTTTAGTGTTGG
GCTTAGTGGCCGCGTTCCCTTGTTCCTTCGATCTTCTGCAGACACCAGAT
ATGTACGAATTGCGGATGGCAGATGAAGACTGGGACCCCGATTTGGACTT
CCCGGGTCTCGATTCGTGCGCTGTCATCACAGATGTGGGCGTGGATCAAT
TCGTGCTCTGTCATCAGGTGTGTAACTGGCGTTGGGTATGATTGACCCGA
GTGTGGATTCTATCTGATCTGAGAAAACCGTCGGTGACCCTGGAATGCTC
AAAATCCACAGACTAACGCTTTGCACCAACCCTTGCCTTCCCTTCCCTTC
CCTTCCCTTCCCTTCCCTTCCCTTCCCTTGGGTTGCACTAACGCTGATAT
TAACAGGCAAAAATCGAGCCGATGCTGCACGTTACCATCGTACTGCACAA
GAGTCTCAACGGACCATTGACGGGAACTGGAGCCATGGAGGCACCAGGTG
CTGGAGCGACGATGACTCTCGAGGTCAACTTTCGAATCCCGGGACAGGAG
GAGTCACATAACATGAGCATTCGAATAGGTGCGTGTAAACGAAGAGGACT
ACAGTCGTTAAGCCTCTTGATTTCGTACACGATATTTTTTGTCCATACGA
AAATCTTGACATAACTTGCACCTCAGTCCACCCTAGCCCTGAAAAGAGTC
AAATCAATCTACAGGTAGTAACCAAGTTCGATGAGGCACTCGTTTTTTCT
CTTCCCCTCACCGTGCCCGTTTTCAGCCCATGACAGCAACCAAAAGGATT
TGGTGCGCTCCCGAGATAGTGGGTCGCGAAGTGCGGCGGCAAGTGCAGCA
GTAAGTGAAGTGGAGGAAATTACGCGCATGGAATCTGGTGGACAGGAGAA
ACAACCTGGGCCCGAGGGGATCGTAGAAAAGACAGGCGCTGAAGAAAAGC
ATCCAGCACAAGAACCGACAGCGGAAAAAGAGACTGTGAAGGGACAGGAG
AAACAACCTGGGCCCGAGGGGATCGTGGAAAAGACAGGCGCTGAAGAAAA
GCATCCCGCACAAGAACCGACGGCGGAAAAAGAGACAGTGAAGCTTCGTA
ATATCGATACTGGTGAAGACATCGAGCTGGCGGAGATCGATGAGCGCGTG
CCTCCATCTTTAGATCCAGGGGAATTGTTTGCCAAAGATGTATCATAAGA
CTGCGGATAAATGCGGCCATTTTGACTTTTACGTTACGTTGGGGTGGGTA
TATCGTGTCAGCCAAGAGTAATGGATGATTTTGAGGTCATGTTGCCCCTT
GGGAGTGTTGATCGTCGCAGATGGGAAAATTCACGTTTGGTCAAAAAATA
ATATCAGGCATGACATGGCTTCAACAGGAGGGTAAATGAAATAGAGGTCG
CAGAAGGTTTCCTAGTGTGTTTCTCCTTACTGCTTTCATGTTTGTTCGAT
AGCCGTTACAATCGCGGGTGTCATGTTGCCCATGCTTGCTGCTGTAACTC
TGGGGCATGCTAGCAACGTCTTAGCCACCCTTTACATAGGCTTGAATATG
CGTTGTCACTGCGACCATCTTGGAATATCAAATAGTCGTGTTGGCTTGTC
ATCGTATTAGACCTTTCCTGAC back to topCoding sequence (CDS) from alignment at A-nodosum_M_contig102:286208..290329- >mRNA_A-nodosum_M_contig102.60.2 ID=mRNA_A-nodosum_M_contig102.60.2|Name=mRNA_A-nodosum_M_contig102.60.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=1428bp|location=Sequence derived from alignment at A-nodosum_M_contig102:286208..290329- (Ascophyllum nodosum dioecious) ATGCCTCATGTCATTTACTGTACAAGTGATAATCCTCTGTGTTTCGTTCT GGGATGTTCCGCGGCCATTAAGCCGGAGGTGCACGGTCGCCTCGCATGCC TTGTGTATTTAAATGGACCAGGGCCCGAGGATACGTGCGTGGCCGTGATG AAGAAGGTCAGCACTGGAGAAAGAATAAAATTCGCCGATCTCCGCAGGCG AAGCGTTGGAGGGCCTCGAGGAGACGCTGACAGCGATGTCATGAGCGAAC AGCGCTTCGTGTCGGAACTGATGGACACGACCCCTTCTTCGTCCTACGAA GGCGACTTAAGGGAAGGCCTCCCCTACAACGCCCACGATGCCTCGGTCTC AGACTCGCCACTCCCGAGGTACGATTCCGACGGAGAGGCAGCCGACGAGG TTGTGACGGGTACACAGGATGGCGTCAGCAAGACCGACTTGATCGTGAAG GAGGACGTGCCAGAGATTCCTGGAGAAACTCAGCAAGGTTCACTTCTGGC TGCCGAGCTAGCCGCGGTCAAGATTAGCGCGTCTCAGCCCAACCAACCTG CTTCCTCGCGACAACGTAACGATACGCATAGCGACGGAGAAAGCTTAATG GGAGATCTGCGGTTGGACCATGGCGCTGGGGGGTGTACGGCCGACCAGCT GATTCGATCGTTGATATCAGAGTGTAAAGCTCTTGAGCTTGGAAGTGACT TGATACAGACACCAGATATGTACGAATTGCGGATGGCAGATGAAGACTGG GACCCCGATTTGGACTTCCCGGGTCTCGATTCGTGCGCTGTCATCACAGA TGTGGGCGTGGATCAATTCGTGCTCTGTCATCAGGCAAAAATCGAGCCGA TGCTGCACGTTACCATCGTACTGCACAAGAGTCTCAACGGACCATTGACG GGAACTGGAGCCATGGAGGCACCAGGTGCTGGAGCGACGATGACTCTCGA GGTCAACTTTCGAATCCCGGGACAGGAGGAGTCACATAACATGAGCATTC GAATAGCCCATGACAGCAACCAAAAGGATTTGGTGCGCTCCCGAGATAGT GGGTCGCGAAGTGCGGCGGCAAGTGCAGCAGTAAGTGAAGTGGAGGAAAT TACGCGCATGGAATCTGGTGGACAGGAGAAACAACCTGGGCCCGAGGGGA TCGTAGAAAAGACAGGCGCTGAAGAAAAGCATCCAGCACAAGAACCGACA GCGGAAAAAGAGACTGTGAAGGGACAGGAGAAACAACCTGGGCCCGAGGG GATCGTGGAAAAGACAGGCGCTGAAGAAAAGCATCCCGCACAAGAACCGA CGGCGGAAAAAGAGACAGTGAAGCTTCGTAATATCGATACTGGTGAAGAC ATCGAGCTGGCGGAGATCGATGAGCGCGTGCCTCCATCTTTAGATCCAGG GGAATTGTTTGCCAAAGATGTATCATAA back to top
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