prot_A-nodosum_M_contig102.60.2 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig102.60.2
Unique Nameprot_A-nodosum_M_contig102.60.2
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length476
Homology
BLAST of mRNA_A-nodosum_M_contig102.60.2 vs. uniprot
Match: A0A6H5KNU9_9PHAE (CRIM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU9_9PHAE)

HSP 1 Score: 463 bits (1192), Expect = 3.240e-157
Identity = 277/437 (63.39%), Postives = 318/437 (72.77%), Query Frame = 0
Query:   50 MKKVSTGERIKFADLRRRSVGGPRGDADSDV-MSEQRFVSELMDTTPSSSYEGD-LREGLPYNAHDASVSDSPLPRYDSDGEAADEVVTGTQDGVSKTDLIVKEDVPEIPGETQQGSLLAAELAAVKISASQPNQP---ASSRQRNDTH--SDGESLMGDLRLDHGA----GGCTADQLIRSLISECKALELGSDLIQTPDMYELRMADEDWDPDLDFPGLDSCAVITDVGVDQFVLCHQAKIEPMLHVTIVLHKSLNGPLTGTGAMEAPGAGATMTLEVNFRIPGQEESHNMSIRIAHDSNQKDLVRSRDSGSRSAAASAAVSEVEEITRMESGGQEKQPGPEGIVEKTGAEEKHPAQEPTAEKETVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRNIDTGEDIELAEIDERVPPSLDPGELF-AKDV 474
            MKKVSTGERIKFADLRRRSVG  R DADSD   SEQRFVSELMDTTPSSSYEG+ L +G  YN  D SVS+SPL RY+SDGEAADEVVT TQ+G+ K DLIVKEDVPEIP ETQQGSLLAA LAAV+I ASQ       A +RQR+DT   SDGESLMGD R+DHG     GGCTA+QLIR+L+SECK+ +LGS+L Q  D Y LRMAD+DWDPDLDFPGLDS AVITDVGVDQFVLCHQA+IEPMLH+TI LHK LNGPLTGTGAMEAPGAGA++TLEV+F+ PGQE +H+MS+ IA +S Q+DLVR RDSG R +AASA  +EVE++ R   G +E+      +VE+ G EE             VK                                  +RN+DTGEDI LAEI +RVPPSLDPGE+F +KDV
Sbjct:   93 MKKVSTGERIKFADLRRRSVGVSR-DADSDAAQSEQRFVSELMDTTPSSSYEGETLGDGYAYNPPDPSVSNSPLARYESDGEAADEVVTDTQEGIGKADLIVKEDVPEIPEETQQGSLLAAGLAAVQIGASQSGLGGLLAGARQRDDTMTLSDGESLMGDPRVDHGTDHGPGGCTAEQLIRALVSECKSRDLGSELTQGADKYVLRMADDDWDPDLDFPGLDSSAVITDVGVDQFVLCHQAQIEPMLHITIALHKGLNGPLTGTGAMEAPGAGASITLEVDFQTPGQEGTHHMSVPIASESGQRDLVRFRDSGVRGSAASADAAEVEKLLRTPPGNKEQ------VVEEIGIEE------------AVK----------------------------------VRNMDTGEDITLAEIKDRVPPSLDPGEVFRSKDV 476          
BLAST of mRNA_A-nodosum_M_contig102.60.2 vs. uniprot
Match: D7FJ13_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ13_ECTSI)

HSP 1 Score: 223 bits (567), Expect = 2.400e-67
Identity = 131/231 (56.71%), Postives = 153/231 (66.23%), Query Frame = 0
Query:  245 MADEDWDPDLDFPGLDSCAVITDVGVDQFVLCHQAKIEPMLHVTIVLHKSLNGPLTGTGAMEAPGAGATMTLEVNFRIPGQEESHNMSIRIAHDSNQKDLVRSRDSGSRSAAASAAVSEVEEITRMESGGQEKQPGPEGIVEKTGAEEKHPAQEPTAEKETVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRNIDTGEDIELAEIDERVPPSLDPGELF-AKDV 474
            MAD+DWDPDLDFPGLDS AVITDVGVDQFVLCHQA+IEPMLH+TI LHK LNGPLTGTGAMEAPGAGA+MTLEV+F+ PGQE +H+MS+ IA +S Q+DLVR RDSG R +AASA  +EVE++ R     +EK      +V + G EE             VK                                  LRN+DTGEDI LAEI +RVPPSLDPGE+F +KDV
Sbjct:    1 MADDDWDPDLDFPGLDSSAVITDVGVDQFVLCHQAQIEPMLHITIALHKGLNGPLTGTGAMEAPGAGASMTLEVDFQTPGQEGTHHMSVPIASESGQRDLVRFRDSGVRGSAASADAAEVEKLLRTPPSNKEK------VVGEIGMEE------------AVK----------------------------------LRNMDTGEDITLAEIKDRVPPSLDPGEVFRSKDV 179          
BLAST of mRNA_A-nodosum_M_contig102.60.2 vs. uniprot
Match: A0A835ZDT3_9STRA (CRIM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDT3_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 9.630e-9
Identity = 51/130 (39.23%), Postives = 71/130 (54.62%), Query Frame = 0
Query:   50 MKKVSTGERIKFADLRRRSVGGPRGDADSDVMSEQRFVSELMDTTPSSSYEGDL-REGLPYNAHDASVSDSPLPRYDSDGEAADEVVTGTQ--DGVSKTDLIVKEDVPEIPG--ETQQGSLLAAELAAVK 174
            MKK+STGER+   D+RR          D+ +  EQ  V ELMDTTPSSS+  D  R+G  Y+      S    P+  SD + A+ VV+G+   +G    DL  K +V ++P   ++   SLL+  LAAVK
Sbjct:    1 MKKISTGERVNLQDIRRGIDQLRLSHTDAAIAGEQMLVEELMDTTPSSSFGEDAWRDGYIYDGAAGGAS----PKDYSDDDGAEAVVSGSYPPEGQESQDLFEKVEVAKLPDSQDSNPTSLLSGALAAVK 126          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig102.60.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KNU9_9PHAE3.240e-15763.39CRIM domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FJ13_ECTSI2.400e-6756.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZDT3_9STRA9.630e-939.23CRIM domain-containing protein n=1 Tax=Tribonema m... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR031567Sin1, middle CRIM domainPFAMPF16978CRIMcoord: 235..279
e-value: 1.5E-6
score: 28.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 176..202
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 323..446
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 386..410
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 420..446

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig102contigA-nodosum_M_contig102:286632..289719 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig102.60.2mRNA_A-nodosum_M_contig102.60.2Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig102 286208..290329 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig102.60.2 ID=prot_A-nodosum_M_contig102.60.2|Name=mRNA_A-nodosum_M_contig102.60.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=476bp
MPHVIYCTSDNPLCFVLGCSAAIKPEVHGRLACLVYLNGPGPEDTCVAVM
KKVSTGERIKFADLRRRSVGGPRGDADSDVMSEQRFVSELMDTTPSSSYE
GDLREGLPYNAHDASVSDSPLPRYDSDGEAADEVVTGTQDGVSKTDLIVK
EDVPEIPGETQQGSLLAAELAAVKISASQPNQPASSRQRNDTHSDGESLM
GDLRLDHGAGGCTADQLIRSLISECKALELGSDLIQTPDMYELRMADEDW
DPDLDFPGLDSCAVITDVGVDQFVLCHQAKIEPMLHVTIVLHKSLNGPLT
GTGAMEAPGAGATMTLEVNFRIPGQEESHNMSIRIAHDSNQKDLVRSRDS
GSRSAAASAAVSEVEEITRMESGGQEKQPGPEGIVEKTGAEEKHPAQEPT
AEKETVKGQEKQPGPEGIVEKTGAEEKHPAQEPTAEKETVKLRNIDTGED
IELAEIDERVPPSLDPGELFAKDVS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR031567CRIM_dom