Homology
BLAST of mRNA_A-nodosum_M_contig102.60.2 vs. uniprot
Match:
A0A6H5KNU9_9PHAE (CRIM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU9_9PHAE)
HSP 1 Score: 464 bits (1194), Expect = 1.160e-152
Identity = 277/438 (63.24%), Postives = 318/438 (72.60%), Query Frame = 2
Query: 758 MKKVSTGERIKFADLRRRSVGGPRGDADSDV-MSEQRFVSELMDTTPSSSYEGD-LREGLPYNAHDASVSDSPLPRYDSDGEAADEVVTGTQDGVSKTDLIVKEDVPEIPGETQQGSLLAAELAAVKISASQPNQP---ASSRQRNDTH--SDGESLMGDLRLDHGA----GGCTADQLIRSLISECKALELGSDLIQTPDMYELRMADEDWDPDLDFPGLDSCAVITDVGVDQFVLCHQAKIEPMLHVTIVLHKSLNGPLTGTGAMEAPGAGATMTLEVNFRIPGQEESHNMSIRIAHDSNQKDLVRSRDSGSRSAAASAAVSEVEEITRMESGGQEKQPGPEGIVEKTGAEEKHPAQEPTAEKETVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRNIDTGEDIELAEIDERVPPSLDPGELF-AKDVS 2035
MKKVSTGERIKFADLRRRSVG R DADSD SEQRFVSELMDTTPSSSYEG+ L +G YN D SVS+SPL RY+SDGEAADEVVT TQ+G+ K DLIVKEDVPEIP ETQQGSLLAA LAAV+I ASQ A +RQR+DT SDGESLMGD R+DHG GGCTA+QLIR+L+SECK+ +LGS+L Q D Y LRMAD+DWDPDLDFPGLDS AVITDVGVDQFVLCHQA+IEPMLH+TI LHK LNGPLTGTGAMEAPGAGA++TLEV+F+ PGQE +H+MS+ IA +S Q+DLVR RDSG R +AASA +EVE++ R G +E+ +VE+ G EE VK +RN+DTGEDI LAEI +RVPPSLDPGE+F +KDV
Sbjct: 93 MKKVSTGERIKFADLRRRSVGVSR-DADSDAAQSEQRFVSELMDTTPSSSYEGETLGDGYAYNPPDPSVSNSPLARYESDGEAADEVVTDTQEGIGKADLIVKEDVPEIPEETQQGSLLAAGLAAVQIGASQSGLGGLLAGARQRDDTMTLSDGESLMGDPRVDHGTDHGPGGCTAEQLIRALVSECKSRDLGSELTQGADKYVLRMADDDWDPDLDFPGLDSSAVITDVGVDQFVLCHQAQIEPMLHITIALHKGLNGPLTGTGAMEAPGAGASITLEVDFQTPGQEGTHHMSVPIASESGQRDLVRFRDSGVRGSAASADAAEVEKLLRTPPGNKEQ------VVEEIGIEE------------AVK----------------------------------VRNMDTGEDITLAEIKDRVPPSLDPGEVFRSKDVG 477
BLAST of mRNA_A-nodosum_M_contig102.60.2 vs. uniprot
Match:
D7FJ13_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ13_ECTSI)
HSP 1 Score: 223 bits (569), Expect = 1.020e-64
Identity = 131/232 (56.47%), Postives = 153/232 (65.95%), Query Frame = 2
Query: 1343 MADEDWDPDLDFPGLDSCAVITDVGVDQFVLCHQAKIEPMLHVTIVLHKSLNGPLTGTGAMEAPGAGATMTLEVNFRIPGQEESHNMSIRIAHDSNQKDLVRSRDSGSRSAAASAAVSEVEEITRMESGGQEKQPGPEGIVEKTGAEEKHPAQEPTAEKETVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRNIDTGEDIELAEIDERVPPSLDPGELF-AKDVS 2035
MAD+DWDPDLDFPGLDS AVITDVGVDQFVLCHQA+IEPMLH+TI LHK LNGPLTGTGAMEAPGAGA+MTLEV+F+ PGQE +H+MS+ IA +S Q+DLVR RDSG R +AASA +EVE++ R +EK +V + G EE VK LRN+DTGEDI LAEI +RVPPSLDPGE+F +KDV
Sbjct: 1 MADDDWDPDLDFPGLDSSAVITDVGVDQFVLCHQAQIEPMLHITIALHKGLNGPLTGTGAMEAPGAGASMTLEVDFQTPGQEGTHHMSVPIASESGQRDLVRFRDSGVRGSAASADAAEVEKLLRTPPSNKEK------VVGEIGMEE------------AVK----------------------------------LRNMDTGEDITLAEIKDRVPPSLDPGEVFRSKDVG 180
BLAST of mRNA_A-nodosum_M_contig102.60.2 vs. uniprot
Match:
A0A835ZDT3_9STRA (CRIM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDT3_9STRA)
HSP 1 Score: 68.2 bits (165), Expect = 2.310e-8
Identity = 51/130 (39.23%), Postives = 71/130 (54.62%), Query Frame = 2
Query: 758 MKKVSTGERIKFADLRRRSVGGPRGDADSDVMSEQRFVSELMDTTPSSSYEGDL-REGLPYNAHDASVSDSPLPRYDSDGEAADEVVTGTQ--DGVSKTDLIVKEDVPEIPG--ETQQGSLLAAELAAVK 1132
MKK+STGER+ D+RR D+ + EQ V ELMDTTPSSS+ D R+G Y+ S P+ SD + A+ VV+G+ +G DL K +V ++P ++ SLL+ LAAVK
Sbjct: 1 MKKISTGERVNLQDIRRGIDQLRLSHTDAAIAGEQMLVEELMDTTPSSSFGEDAWRDGYIYDGAAGGAS----PKDYSDDDGAEAVVSGSYPPEGQESQDLFEKVEVAKLPDSQDSNPTSLLSGALAAVK 126
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig102.60.2 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 3
0 1 Expect = 1.16e-152 / Id = 63.24 Expect = 1.02e-64 / Id = 56.47 Expect = 2.31e-8 / Id = 39.23 Sequence A0A6H5KNU9_9PHAE D7FJ13_ECTSI A0A835ZDT3_9STRA
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1
Start 1
Model size 2462
Hectar predicted targeting category other localisation
Exons 6
Ec32 ortholog description Stress-activated map kinase interacting 1
Ec32 ortholog Ec-07_004820.1
Cds size 1428
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680866383.278333-UTR-A-nodosum_M_contig102:286207..286631 1680866383.278333-UTR-A-nodosum_M_contig102:286207..286631 Ascophyllum nodosum dioecious UTR A-nodosum_M_contig102 286208..286631 -
1680866383.4316618-UTR-A-nodosum_M_contig102:289719..290329 1680866383.4316618-UTR-A-nodosum_M_contig102:289719..290329 Ascophyllum nodosum dioecious UTR A-nodosum_M_contig102 289720..290329 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680866383.2924392-CDS-A-nodosum_M_contig102:286631..287053 1680866383.2924392-CDS-A-nodosum_M_contig102:286631..287053 Ascophyllum nodosum dioecious CDS A-nodosum_M_contig102 286632..287053 -
1680866383.3118186-CDS-A-nodosum_M_contig102:287251..287423 1680866383.3118186-CDS-A-nodosum_M_contig102:287251..287423 Ascophyllum nodosum dioecious CDS A-nodosum_M_contig102 287252..287423 -
1680866383.3226004-CDS-A-nodosum_M_contig102:287612..287738 1680866383.3226004-CDS-A-nodosum_M_contig102:287612..287738 Ascophyllum nodosum dioecious CDS A-nodosum_M_contig102 287613..287738 -
1680866383.3304083-CDS-A-nodosum_M_contig102:288199..288268 1680866383.3304083-CDS-A-nodosum_M_contig102:288199..288268 Ascophyllum nodosum dioecious CDS A-nodosum_M_contig102 288200..288268 -
1680866383.3382704-CDS-A-nodosum_M_contig102:288503..288677 1680866383.3382704-CDS-A-nodosum_M_contig102:288503..288677 Ascophyllum nodosum dioecious CDS A-nodosum_M_contig102 288504..288677 -
1680866383.413561-CDS-A-nodosum_M_contig102:289254..289719 1680866383.413561-CDS-A-nodosum_M_contig102:289254..289719 Ascophyllum nodosum dioecious CDS A-nodosum_M_contig102 289255..289719 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig102.60.2
>prot_A-nodosum_M_contig102.60.2 ID=prot_A-nodosum_M_contig102.60.2|Name=mRNA_A-nodosum_M_contig102.60.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=476bp
MPHVIYCTSDNPLCFVLGCSAAIKPEVHGRLACLVYLNGPGPEDTCVAVM KKVSTGERIKFADLRRRSVGGPRGDADSDVMSEQRFVSELMDTTPSSSYE GDLREGLPYNAHDASVSDSPLPRYDSDGEAADEVVTGTQDGVSKTDLIVK EDVPEIPGETQQGSLLAAELAAVKISASQPNQPASSRQRNDTHSDGESLM GDLRLDHGAGGCTADQLIRSLISECKALELGSDLIQTPDMYELRMADEDW DPDLDFPGLDSCAVITDVGVDQFVLCHQAKIEPMLHVTIVLHKSLNGPLT GTGAMEAPGAGATMTLEVNFRIPGQEESHNMSIRIAHDSNQKDLVRSRDS GSRSAAASAAVSEVEEITRMESGGQEKQPGPEGIVEKTGAEEKHPAQEPT AEKETVKGQEKQPGPEGIVEKTGAEEKHPAQEPTAEKETVKLRNIDTGED IELAEIDERVPPSLDPGELFAKDVS* back to top mRNA from alignment at A-nodosum_M_contig102:286208..290329-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig102.60.2 ID=mRNA_A-nodosum_M_contig102.60.2|Name=mRNA_A-nodosum_M_contig102.60.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4122bp|location=Sequence derived from alignment at A-nodosum_M_contig102:286208..290329- (Ascophyllum nodosum dioecious)TCTCTTTCGCGTAACCTGGGCTCGTGCCATCTGATACAACGGTACTGTGT
GTATACGTAACAAGCATCATCAGCGAGAGGTGCGACGGGTGCTTCGCTCG
TGATGGCTCGAGCGATTTCGTTGCAGAGATGATCGACCACAATTGTAATA
AGTAGCCGACGCTTTCTCGTCAGAAATGATAATGCGTTCCCTACTTCAGG
ATAATCGTTCCCTGATCGTCATTTACTATTCTTCGACAGCGCCGAATCCC
CTTCGGATTCTACTAAAGCCCTCCTGCAGGTAGCTCTTCCCTTGGGCTAA
ACTTCCATCTCTTAAATGGCTTCCGCTTCTGCTCGTACTTGGAACCATCT
TGTGTAGAACCTAGTCCAATCGGTTCATGGATATCTGATACGAAGTACTC
GAGAATCCCTAGGTCGTATGTGATAGGTTGCAGTTTTTTCTTCTACGTGC
AATATTTGGTACAGACATTCGTACACTCGCCGAGTCTTGGGCACGGAGAG
TTGAGCCAATCTGGTTGATACATTTGTTACTTTTCTTGTTATTAATAGTC
TAATACCCCTATTAATAGCAGTATTCTGTCTCTAGACCGGTGTTTGGCAC
TCTGGCCTGC ATGCCTCATGTCATTTACTGTACAAGTGATAATCCTCTGT
GTTTCGTTCTGGGATGTTCCGCGGCCATTAAGCCGGAGGTGCACGGTCGC
CTCGCATGCCTTGTGTATTTAAATGGACCAGGGCCCGAGGATACGTGCGT
GGCCGTGATGAAGAAGGTCAGCACTGGAGAAAGAATAAAATTCGCCGATC
TCCGCAGGCGAAGCGTTGGAGGGCCTCGAGGAGACGCTGACAGCGATGTC
ATGAGCGAACAGCGCTTCGTGTCGGAACTGATGGACACGACCCCTTCTTC
GTCCTACGAAGGCGACTTAAGGGAAGGCCTCCCCTACAACGCCCACGATG
CCTCGGTCTCAGACTCGCCACTCCCGAGGTACGATTCCGACGGAGAGGCA
GCCGACGAGGTTGTGACGGGTACACAGGATGGCGTCAGCAAGACCGACTT
GATCGTGAAGGAGGACGTGCCAGAG GTACAAATGTACTCGTAAAAATAAA
ATTGCAGACCTCTTGGTTCAACCTGAGCAGTCTTGTACGGTTGTTCCACT
AGAGCTCTGTGCTTGGTTGTTCGGCCTCTGGATCAGCAGACAAGTCGAGT
CGTCACTTGGGTAAGAGGCTCTCAAATCTCGAATTTTGAGGGGAGTTTCT
GTACGTGAAAAGAGTACCAGGTAGAAGATACCGGTACGGTATATCCGAAA
TATTATTTTTCCATGTTCAGCTGACCACTATATACTATAGAGCAGGATTG
GCAACTTTACCCGGTTGATCCATACATCTTCCCCTGAACGTGGTCTGAAT
AGTTTGGACGTCTTTTTAGCGAGATACTAAACCCTGTGCGTCATGTATGT
AGTGCGATTGCTGACATTTAGGGTTTGCAAAGCGCAATCGCCTGCACCGC
CGTGGTCAATTTTGATTGGTATGTACTCCTATTCAAAACTCCGAAGTGTA
AATGCCTTAAAACACCTGGCGTGACTTGCTTCATTAAAAAATGACACTGC
TTCTAAGACGCGTTACGACTACACCTTTTATTTATTTCATCCCGAAATTC
AGATTCCTGGAGAAACTCAGCAAGGTTCACTTCTGGCTGCCGAGCTAGCC
GCGGTCAAGATTAGCGCGTCTCAGCCCAACCAACCTGCTTCCTCGCGACA
ACGTAACGATACGCATAGCGACGGAGAAAGCTTAATGGGAGATCTGCGGT
TGGACCATGGCGCTGGGGGGTGTACG GTGCGTACAAGCCGTGATATTCTG
TTCCGGGCAGGGAACTACAGCGCGTTTACGACCAGCGTTGGTAATGCACC
CGCTTCTGTATTCGGAAGATTGATACACATGCCGATCTTCCTTGTGATCG
TTTTCCACGCTAACGAGTTCGACCTCCCTCCATTCTGACGACATATCTTC
TCTTCTCTTCTCTTTCGCGTCTCCACTGCTTGCGTGGCAACTACCGGAAT
CCCGTGACCAGGCCGACCAGCTGATTCGATCGTTGATATCAGAGTGTAAA
GCTCTTGAGCTTGGAAGTGACTTGATACAG GTGAGACGCTTCGACAGTAT
GGCTGGTGGTAATGTTTTCCAGCTAAGGAGCCTCGAGCACGGCTAGTTAA
AGACATTGAAAGACATTTAAGATGACTTAGCTATTACTGGTAACAGAGGG
GTAGAGCAGGGCTTTATTGTATACCAAGGTAAGAAGTTGAAAATACACGT
TGTTATATACAGAATTTTTACGGATCGTGTCAGATCTTACATGGGTTGAT
CTTTGAACCTGGTCAACCTGTTCGACGGATTCCCGATGCTCCCCAATGCT
CTAGAAATACTCGACTGCTCTGAAGTCGCCTATCAATCCGACTTCGCAAT
ATCTCTTCAAAGAATCAAGCAACCCCCAGGGCCCCAAGCAGTTACCCAAC
ATGCGGTTTACGAGCATACTAGACCATCGAATTTATGGTTTTAGTGTTGG
GCTTAGTGGCCGCGTTCCCTTGTTCCTTCGATCTTCTGCAGACACCAGAT
ATGTACGAATTGCGGATGGCAGATGAAGACTGGGACCCCGATTTGGACTT
CCCGGGTCTCGATTCGTGCGCTGTCATCACAGATGTGGGCGTGGATCAAT
TCGTGCTCTGTCATCAG GTGTGTAACTGGCGTTGGGTATGATTGACCCGA
GTGTGGATTCTATCTGATCTGAGAAAACCGTCGGTGACCCTGGAATGCTC
AAAATCCACAGACTAACGCTTTGCACCAACCCTTGCCTTCCCTTCCCTTC
CCTTCCCTTCCCTTCCCTTCCCTTCCCTTGGGTTGCACTAACGCTGATAT
TAACAGGCAAAAATCGAGCCGATGCTGCACGTTACCATCGTACTGCACAA
GAGTCTCAACGGACCATTGACGGGAACTGGAGCCATGGAGGCACCAGGTG
CTGGAGCGACGATGACTCTCGAGGTCAACTTTCGAATCCCGGGACAGGAG
GAGTCACATAACATGAGCATTCGAATAG GTGCGTGTAAACGAAGAGGACT
ACAGTCGTTAAGCCTCTTGATTTCGTACACGATATTTTTTGTCCATACGA
AAATCTTGACATAACTTGCACCTCAGTCCACCCTAGCCCTGAAAAGAGTC
AAATCAATCTACAGGTAGTAACCAAGTTCGATGAGGCACTCGTTTTTTCT
CTTCCCCTCACCGTGCCCGTTTTCAGCCCATGACAGCAACCAAAAGGATT
TGGTGCGCTCCCGAGATAGTGGGTCGCGAAGTGCGGCGGCAAGTGCAGCA
GTAAGTGAAGTGGAGGAAATTACGCGCATGGAATCTGGTGGACAGGAGAA
ACAACCTGGGCCCGAGGGGATCGTAGAAAAGACAGGCGCTGAAGAAAAGC
ATCCAGCACAAGAACCGACAGCGGAAAAAGAGACTGTGAAGGGACAGGAG
AAACAACCTGGGCCCGAGGGGATCGTGGAAAAGACAGGCGCTGAAGAAAA
GCATCCCGCACAAGAACCGACGGCGGAAAAAGAGACAGTGAAGCTTCGTA
ATATCGATACTGGTGAAGACATCGAGCTGGCGGAGATCGATGAGCGCGTG
CCTCCATCTTTAGATCCAGGGGAATTGTTTGCCAAAGATGTATCATAA GA
CTGCGGATAAATGCGGCCATTTTGACTTTTACGTTACGTTGGGGTGGGTA
TATCGTGTCAGCCAAGAGTAATGGATGATTTTGAGGTCATGTTGCCCCTT
GGGAGTGTTGATCGTCGCAGATGGGAAAATTCACGTTTGGTCAAAAAATA
ATATCAGGCATGACATGGCTTCAACAGGAGGGTAAATGAAATAGAGGTCG
CAGAAGGTTTCCTAGTGTGTTTCTCCTTACTGCTTTCATGTTTGTTCGAT
AGCCGTTACAATCGCGGGTGTCATGTTGCCCATGCTTGCTGCTGTAACTC
TGGGGCATGCTAGCAACGTCTTAGCCACCCTTTACATAGGCTTGAATATG
CGTTGTCACTGCGACCATCTTGGAATATCAAATAGTCGTGTTGGCTTGTC
ATCGTATTAGACCTTTCCTGAC back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig102:286208..290329-
>mRNA_A-nodosum_M_contig102.60.2 ID=mRNA_A-nodosum_M_contig102.60.2|Name=mRNA_A-nodosum_M_contig102.60.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=1428bp|location=Sequence derived from alignment at A-nodosum_M_contig102:286208..290329- (Ascophyllum nodosum dioecious) ATGCCTCATGTCATTTACTGTACAAGTGATAATCCTCTGTGTTTCGTTCT GGGATGTTCCGCGGCCATTAAGCCGGAGGTGCACGGTCGCCTCGCATGCC TTGTGTATTTAAATGGACCAGGGCCCGAGGATACGTGCGTGGCCGTGATG AAGAAGGTCAGCACTGGAGAAAGAATAAAATTCGCCGATCTCCGCAGGCG AAGCGTTGGAGGGCCTCGAGGAGACGCTGACAGCGATGTCATGAGCGAAC AGCGCTTCGTGTCGGAACTGATGGACACGACCCCTTCTTCGTCCTACGAA GGCGACTTAAGGGAAGGCCTCCCCTACAACGCCCACGATGCCTCGGTCTC AGACTCGCCACTCCCGAGGTACGATTCCGACGGAGAGGCAGCCGACGAGG TTGTGACGGGTACACAGGATGGCGTCAGCAAGACCGACTTGATCGTGAAG GAGGACGTGCCAGAGATTCCTGGAGAAACTCAGCAAGGTTCACTTCTGGC TGCCGAGCTAGCCGCGGTCAAGATTAGCGCGTCTCAGCCCAACCAACCTG CTTCCTCGCGACAACGTAACGATACGCATAGCGACGGAGAAAGCTTAATG GGAGATCTGCGGTTGGACCATGGCGCTGGGGGGTGTACGGCCGACCAGCT GATTCGATCGTTGATATCAGAGTGTAAAGCTCTTGAGCTTGGAAGTGACT TGATACAGACACCAGATATGTACGAATTGCGGATGGCAGATGAAGACTGG GACCCCGATTTGGACTTCCCGGGTCTCGATTCGTGCGCTGTCATCACAGA TGTGGGCGTGGATCAATTCGTGCTCTGTCATCAGGCAAAAATCGAGCCGA TGCTGCACGTTACCATCGTACTGCACAAGAGTCTCAACGGACCATTGACG GGAACTGGAGCCATGGAGGCACCAGGTGCTGGAGCGACGATGACTCTCGA GGTCAACTTTCGAATCCCGGGACAGGAGGAGTCACATAACATGAGCATTC GAATAGCCCATGACAGCAACCAAAAGGATTTGGTGCGCTCCCGAGATAGT GGGTCGCGAAGTGCGGCGGCAAGTGCAGCAGTAAGTGAAGTGGAGGAAAT TACGCGCATGGAATCTGGTGGACAGGAGAAACAACCTGGGCCCGAGGGGA TCGTAGAAAAGACAGGCGCTGAAGAAAAGCATCCAGCACAAGAACCGACA GCGGAAAAAGAGACTGTGAAGGGACAGGAGAAACAACCTGGGCCCGAGGG GATCGTGGAAAAGACAGGCGCTGAAGAAAAGCATCCCGCACAAGAACCGA CGGCGGAAAAAGAGACAGTGAAGCTTCGTAATATCGATACTGGTGAAGAC ATCGAGCTGGCGGAGATCGATGAGCGCGTGCCTCCATCTTTAGATCCAGG GGAATTGTTTGCCAAAGATGTATCATAA back to top