mRNA_A-nodosum_M_contig102.115.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig102.115.1
Unique NamemRNA_A-nodosum_M_contig102.115.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig102.115.1 vs. uniprot
Match: A0A6H5JXU1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU1_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 1.730e-52
Identity = 106/251 (42.23%), Postives = 147/251 (58.57%), Query Frame = 3
Query:  786 ELSWYLGCAFERDRKGGVLRASQRAFIESVVSRYGVEAVSDLPASQSADLGPRRDDEPVCDKPVRAAVGSLI*LGGMTRPDIANVVRAVARQAHDPAGRHWRSARKILAYLNKTKDLGLMFVKDGDRKLSVYVDAD*AFSTID---------------------------------LFENNQGAIAIAENPISRGRTKHIDVRYHFIRELVERKVLNIQYTESSKQHADILTKPLGLEAFARHRSFLMNLP 1439
            E +WY GCA   D + G+ + SQ A+IES++ R+ V  ++ +PA+  ADLGP+RDDEP  DKPVR A+G L+    +TRPDIA  +  + + AH P GR W +  +I++YLN TKD G+ +V+     L+V+VDA  A S +D                                 + E+N+GA+A+ ENP S  R+KHIDVR+HFIREL E   +  +Y  + +QHAD+LTK LG E    HR  LMNLP
Sbjct:  160 ECTWYDGCAIVMDVENGITKLSQTAYIESMLKRFDVTTIAFIPAATDADLGPKRDDEPAVDKPVREAIGCLM-WTKLTRPDIALPLNKLQKIAHSPTGRIWNALVRIMSYLNFTKDFGITYVRGSGLDLNVFVDASYADSEVDRRSTTGLAGVKEALFVRGVLSFIAPETSGAKIKVLEDNKGALALIENPFSSARSKHIDVRFHFIRELFESGKITAEYVPTGEQHADMLTKVLGREKLEYHRKALMNLP 409          
BLAST of mRNA_A-nodosum_M_contig102.115.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 192 bits (487), Expect = 4.310e-49
Identity = 109/280 (38.93%), Postives = 152/280 (54.29%), Query Frame = 3
Query:  786 ELSWYLGCAFERDRKGGVLRASQRAFIESVVSRYGVEAVSDLPASQSADLGPRRDDEPVCDKPVRAAVGSLI*LGGMTRPDIANVVRAVARQAHDPAGRHWRSARKILAYLNKTKDLGLMFVKDGDRKLSVYVDAD*AF----------------------------------------------------------------STIDLFENNQGAIAIAENPISRGRTKHIDVRYHFIRELVERKVLNIQYTESSKQHADILTKPLGLEAFARHRSFLMN 1433
            E  W+ GCA ERD + G LR SQ A+I+S+V+R+ V++ S +PAS   D+GP+RDDE   + PVR A+GS++ +   +RPDI+  VRAVAR AH PA RHW++  KILAYL +T+DLG+ + +     L+VYVDA  A                                                                 S+I + E+NQGA+A+ +NP+S  R+KHIDVRYHFIR L     ++I++  +S+QHAD+LTK L   +   HR  LMN
Sbjct:  227 ECVWFDGCAVERDLEAGTLRISQTAYIDSIVNRFDVQSTSSIPASPGVDIGPKRDDESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMN 506          
BLAST of mRNA_A-nodosum_M_contig102.115.1 vs. uniprot
Match: A0A6H5K123_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K123_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 1.920e-48
Identity = 105/264 (39.77%), Postives = 158/264 (59.85%), Query Frame = 3
Query:  735 KDFLSTCLLEEFQTTGV-ELSWYLGCAFERDRKGGVLRASQRAFIESVVSRYGVEAVSDLPASQSADLGPRRDDEPVCDKPVRAAVGSLI*LGGMTRPDIANVVRAVARQAHDPAGRHWRSARKILAYL-----NKTKDLGLM--------------FVKDGD--------RKLSVYVDAD*AFSTIDLFENNQGAIAIAENPISRGRTKHIDVRYHFIRELVERKVLNIQYTESSKQHADILTKPLGLEAFARHRSFLMNLPE 1442
            K+ L++ L ++F T  + E  W+  CA +RD + G L  S+ A+I+S+V R+ V++ S +PAS   DLGPRRDDE   + PVR A+GS++ +   +RPD++   RAVAR AH PA RHW + +KIL YL     + T  +G+M              ++  G+        R +   V  +   S+I + E+NQGAIA+ +NP+S GRT  IDVR+HFIR L+    +++++  +++QHAD+LTK L   +   HR  LMNLPE
Sbjct:   27 KELLAS-LNKKFPTKNLGECEWFDRCAIDRDVEAGTLNISETAYIDSMVKRFDVQSTSRIPASPGIDLGPRRDDEKGGEWPVREAIGSMMWVSAFSRPDVSFAARAVARHAHAPARRHWDAIQKILCYLKGTSASPTTGIGVMAGRSIGSLSSTEAEYIAAGEGVKDALFVRAVLSIVAPETRGSSIQVLEDNQGAIALVQNPLSSGRTNQIDVRFHFIRGLLRSGGVSVRFVPTTEQHADLLTKALSRASLQYHRRKLMNLPE 289          
BLAST of mRNA_A-nodosum_M_contig102.115.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 4.050e-48
Identity = 111/283 (39.22%), Postives = 154/283 (54.42%), Query Frame = 3
Query:  786 ELSWYLGCAFERDRKGGVLRASQRAFIESVVSRYGVEAVSDLPASQSADLGPRRDDEPVCDKPVRAAVGSLI*LGGMTRPDIANVVRAVARQAHDPAGRHWRSARKILAYLNKTKDLGLMFVKDGDRKLSVYVDAD*AF----------------------------------------------------------------STIDLFENNQGAIAIAENPISRGRTKHIDVRYHFIRELVERKVLNIQYTESSKQHADILTKPLGLEAFARHRSFLMNLPE 1442
            E  W+ GCA ERD + G LR SQ A+I+S+V R+ V++ S +PA+  ADLGP+R+DE   + PVR A+GS++ +   +RPD++  VRAVAR AH PA RHW + +KIL YL  T+DLG+ + +     L+VYVDA  A                                                                 S+I + E+NQGAIA+ +NP+S GRTKHIDVRYHFIR L     +++++  +++QHAD+LTK L   +   HR  LMNLPE
Sbjct:  964 ECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNLPE 1246          
BLAST of mRNA_A-nodosum_M_contig102.115.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 5.080e-48
Identity = 111/283 (39.22%), Postives = 154/283 (54.42%), Query Frame = 3
Query:  786 ELSWYLGCAFERDRKGGVLRASQRAFIESVVSRYGVEAVSDLPASQSADLGPRRDDEPVCDKPVRAAVGSLI*LGGMTRPDIANVVRAVARQAHDPAGRHWRSARKILAYLNKTKDLGLMFVKDGDRKLSVYVDAD*AF----------------------------------------------------------------STIDLFENNQGAIAIAENPISRGRTKHIDVRYHFIRELVERKVLNIQYTESSKQHADILTKPLGLEAFARHRSFLMNLPE 1442
            E  W+ GCA ERD + G LR SQ A+I+S+V R+ V++ S +PA+  ADLGP+R+DE   + PVR A+GS++ +   +RPD++  VRAVAR AH PA RHW + +KIL YL  T+DLG+ + +     L+VYVDA  A                                                                 S+I + E+NQGAIA+ +NP+S GRTKHIDVRYHFIR L     +++++  +++QHAD+LTK L   +   HR  LMNLPE
Sbjct: 1343 ECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNLPE 1625          
BLAST of mRNA_A-nodosum_M_contig102.115.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 5.380e-48
Identity = 111/283 (39.22%), Postives = 154/283 (54.42%), Query Frame = 3
Query:  786 ELSWYLGCAFERDRKGGVLRASQRAFIESVVSRYGVEAVSDLPASQSADLGPRRDDEPVCDKPVRAAVGSLI*LGGMTRPDIANVVRAVARQAHDPAGRHWRSARKILAYLNKTKDLGLMFVKDGDRKLSVYVDAD*AF----------------------------------------------------------------STIDLFENNQGAIAIAENPISRGRTKHIDVRYHFIRELVERKVLNIQYTESSKQHADILTKPLGLEAFARHRSFLMNLPE 1442
            E  W+ GCA ERD + G LR SQ A+I+S+V R+ V++ S +PA+  ADLGP+R+DE   + PVR A+GS++ +   +RPD++  VRAVAR AH PA RHW + +KIL YL  T+DLG+ + +     L+VYVDA  A                                                                 S+I + E+NQGAIA+ +NP+S GRTKHIDVRYHFIR L     +++++  +++QHAD+LTK L   +   HR  LMNLPE
Sbjct: 1506 ECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNLPE 1788          
BLAST of mRNA_A-nodosum_M_contig102.115.1 vs. uniprot
Match: A0A6H5JSU5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSU5_9PHAE)

HSP 1 Score: 191 bits (485), Expect = 8.970e-48
Identity = 105/265 (39.62%), Postives = 149/265 (56.23%), Query Frame = 3
Query:  786 ELSWYLGCAFERDRKGGVLRASQRAFIESVVSRYGVEAVSDLPASQSADLGPRRDDEPVCDKPVRAAVGSLI*LGGMTRPDIANVVRAVARQAHDPAGRHWRSARKILAYLNKTKDLGLMFVKDGDRKLSVYVDAD*AFST-----------------------------------------------IDLFENNQGAIAIAENPISRGRTKHIDVRYHFIRELVERKVLNIQYTESSKQHADILTKPLGLEAFARHRSFLMNLP 1439
            E  W+ GCA ERD + G LR SQ A+I+S+V R+ V++ S +PAS S DLGP RDDE     PVR A+GS++ +   +RPD++  VRAVA  AH PA RHW + +KIL YL +T+D+G+ + +    +L+VYVDA  A +                                                I + E+NQG I + +NP+S GRTKHIDVR+HFIR L     +++++  +++QHAD+LTK    ++   HR  LMNLP
Sbjct:  449 ECEWFDGCATERDVEAGTLRISQTAYIDSMVKRFDVQSTSRIPASPSVDLGPERDDEKGGKCPVREAIGSMMCVSTFSRPDVSFAVRAVACHAHAPAKRHWDAIQKILGYLKETRDVGITYKRGSGLELAVYVDASYADTENRRSVSGLATMVGGTVVSHGSKTKSIVSLSSTEAKYIAAGEGVKEAFIQVLEDNQGGIELVQNPLSSGRTKHIDVRFHFIRGLFRSGDISVKFVPTTEQHADLLTKARSRDSLQYHRRKLMNLP 713          
BLAST of mRNA_A-nodosum_M_contig102.115.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE)

HSP 1 Score: 190 bits (482), Expect = 1.580e-47
Identity = 107/264 (40.53%), Postives = 150/264 (56.82%), Query Frame = 3
Query:  735 KDFLSTCLLEEFQTTGV-ELSWYLGCAFERDRKGGVLRASQRAFIESVVSRYGVEAVSDLPASQSADLGPRRDDEPVCDKPVRAAVGSLI*LGGMTRPDIANVVRAVARQAHDPAGRHWRSARKILAYLNKTKDLGLMFVKDGDRKLSVYVDAD*AFSTID----------------------------LFENNQGAIAIAENPISRGRTKHIDVRYHFIRELVERKVLNIQYTESSKQHADILTKPLGLEAFARHRSFLMNLP 1439
            ++ L   L ++F    V E +WY GCA   D + G+ + SQ A+IES++ R+ V   +  PA+  ADLGP+RDDEP  DKPVR A+G L+    +TRPDIA  +  + + AH P GR W +  +I++YLN TKD G+ +V      LSV+VDA  A + +D                            + E+N+G +A+ E P S  R+KHIDVR+HFIREL +   +  +Y  + +QHAD+LTK LG E    HR  LMNLP
Sbjct:  422 REELFASLNKKFPVKDVGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDVTTTAFTPAATDADLGPKRDDEPAVDKPVREAIGCLM-WTKLTRPDIALPLNKLQKIAHSPTGRMWNALVRIMSYLNFTKDFGITYVLGSGLDLSVFVDASYADNEVDKQPGVKGALFVRGVLSFIAPETSGAKIKVLEDNKGTLALIEPPSSSARSKHIDVRFHFIRELFKSGKITTEYVPTGEQHADMLTKVLGREKVEYHRKALMNLP 684          
BLAST of mRNA_A-nodosum_M_contig102.115.1 vs. uniprot
Match: A0A6H5KV13_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV13_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 2.460e-47
Identity = 102/234 (43.59%), Postives = 150/234 (64.10%), Query Frame = 3
Query:  744 LSTCLLEEFQTTGV-ELSWYLGCAFERDRKGGVLRASQRAFIESVVSRYGVEAVSDLPASQSADLGPRRDDEPVCDKPVRAAVGSLI*LGGMTRPDIANVVRAVARQAHDPAGRHWRSARKILAYLNKTKDLGLMFVKDGDRKLSVYVDAD*AFSTIDLFENNQGAIAIAENPISRGRTKHIDVRYHFIRELVERKVLNIQYTESSKQHADILTKPLGLEAFARHRSFLMNLPE 1442
            L   L E+F    + E  W+ GCA ERD + G L+ S+ A+I+S+V R+ V++ S +PA+  ADLGP+R+DE   + PVR A+GS++ +   +RPD++  VRAVAR AH PA RHW + +KIL YL  T+D    + +     L+V          I + E+NQGAIA+ +NP+S GRTKHIDVR++FIR L     +++++  +++QHA++LTK L   +   HR  LMNLPE
Sbjct: 1104 LLASLNEKFLNNNLGECQWFDGCAIERDVEAGTLKISRTAYIDSMVKRFDVQSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDNRHHYQRGSGLGLAV----------IQVLEDNQGAIALVQNPLSSGRTKHIDVRFYFIRGLFRSGEISVKFVPTTEQHANLLTKALSRASLQYHRRKLMNLPE 1327          
BLAST of mRNA_A-nodosum_M_contig102.115.1 vs. uniprot
Match: A0A6H5K274_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K274_9PHAE)

HSP 1 Score: 190 bits (483), Expect = 2.620e-47
Identity = 108/283 (38.16%), Postives = 154/283 (54.42%), Query Frame = 3
Query:  786 ELSWYLGCAFERDRKGGVLRASQRAFIESVVSRYGVEAVSDLPASQSADLGPRRDDEPVCDKPVRAAVGSLI*LGGMTRPDIANVVRAVARQAHDPAGRHWRSARKILAYLNKTKDLGLMFVKDGDRKLSVYVDAD*AF----------------------------------------------------------------STIDLFENNQGAIAIAENPISRGRTKHIDVRYHFIRELVERKVLNIQYTESSKQHADILTKPLGLEAFARHRSFLMNLPE 1442
            E  W+ GCA ERD + G LR SQ A+I+S+V+R+ V++ S +PA+  ADLGP+R+DE   + PVR A+GS++ +   +RPD++  VRAVAR AH PA RHW + +KIL YL  T+DLG+ + +     L+VYVDA  A                                                                 S+I + E+NQGA+A+ +NP+S GRT HIDVR+HFIR L     +++++  +++QHAD+LTK L   +   HR  LMNLPE
Sbjct:  475 ECQWFDGCAIERDVEAGTLRISQTAYIDSMVARFDVQSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSMEAEYIAAGEGVKEALFVRAVLLFVAPETRGSSIQVLEDNQGAMALVQNPLSSGRTTHIDVRFHFIRGLFGSGDISVKFVPTTEQHADLLTKALRKASLQYHRRKLMNLPE 757          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig102.115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JXU1_9PHAE1.730e-5242.23Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JCG0_9PHAE4.310e-4938.93Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K123_9PHAE1.920e-4839.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSG8_9PHAE4.050e-4839.22Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE5.080e-4839.22Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE5.380e-4839.22Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JSU5_9PHAE8.970e-4839.62Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KF18_9PHAE1.580e-4740.53Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KV13_9PHAE2.460e-4743.59CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K274_9PHAE2.620e-4738.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig102contigA-nodosum_M_contig102:822267..824786 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog28532.XP_010526678.1
PFAMsRVT_2,Retrotran_gag_2,Retrotran_gag_3,Retrotrans_gag,gag_pre-integrs,rve
Model size2345
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.74e-35
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37RIF@33090|Viridiplantae,3GBWZ@35493|Streptophyta
Descriptioncysteine-rich RLK (RECEPTOR-like protein kinase) 8
Cds size480
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866384.6075673-UTR-A-nodosum_M_contig102:822266..8225491680866384.6075673-UTR-A-nodosum_M_contig102:822266..822549Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig102 822267..822549 +
1680866384.628092-UTR-A-nodosum_M_contig102:823029..8234711680866384.628092-UTR-A-nodosum_M_contig102:823029..823471Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig102 823030..823471 +
1680866384.6407764-UTR-A-nodosum_M_contig102:823646..8247861680866384.6407764-UTR-A-nodosum_M_contig102:823646..824786Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig102 823647..824786 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866384.6172137-CDS-A-nodosum_M_contig102:822549..8230291680866384.6172137-CDS-A-nodosum_M_contig102:822549..823029Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig102 822550..823029 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig102.115.1prot_A-nodosum_M_contig102.115.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig102 822550..823029 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig102.115.1

>prot_A-nodosum_M_contig102.115.1 ID=prot_A-nodosum_M_contig102.115.1|Name=mRNA_A-nodosum_M_contig102.115.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=160bp
MRAEFKGLVGLNTFEFVDIVPDGVNVVSARWVFAWKVDKDGNIVKPKARL
VARGFSQVHTVDFLETYAPTPAASSVKLLVAIAVKNDWELRQLDVKQAFI
QADLDFNVFMKLPDGCGDKSGKVVKLNKSVYSLKQADRRWAMHLRDVIVR
KGFSEYLSS*
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mRNA from alignment at A-nodosum_M_contig102:822267..824786+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig102.115.1 ID=mRNA_A-nodosum_M_contig102.115.1|Name=mRNA_A-nodosum_M_contig102.115.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2520bp|location=Sequence derived from alignment at A-nodosum_M_contig102:822267..824786+ (Ascophyllum nodosum dioecious)
GTGTCAGTTCAGTATTGAACCGCCGTGTGCCTCGAAGCTATACTGCTGTA GTGGGTACAAGTACTTGTTTTATCTTGTCTAACTACTGTCTATAGAGAGC TCTTGTAGAAATCACTGTCCACGACGTGTGTTGTGATGCCATTGTCTTTT CATCTGAGATCGCTTGTGATACTGAGCTGAAAGGAGAGTGTGAAGCAGTT GACAATGAAGCGTTATTCCGACCCCAAATGCGAAAATGTCAGTGGTACTA AAAAAAACAAAACAAAAAAACTAGGACGACGCGATGAGGGCAGAGTTCAA GGGACTTGTTGGTCTGAACACGTTTGAATTCGTAGATATAGTACCTGATG GTGTCAATGTCGTAAGTGCTCGATGGGTGTTTGCCTGGAAGGTAGACAAA GATGGCAACATCGTGAAACCAAAAGCGAGGCTAGTTGCAAGGGGCTTTAG TCAGGTACATACCGTAGATTTCTTGGAAACTTATGCTCCTACTCCGGCTG CGTCCAGTGTTAAACTATTGGTAGCTATTGCTGTCAAAAATGACTGGGAA TTACGACAGCTAGATGTAAAACAAGCATTCATTCAGGCTGATTTGGACTT CAATGTCTTCATGAAACTTCCTGATGGCTGTGGAGACAAAAGTGGCAAAG TAGTGAAACTCAATAAGTCAGTGTATAGCCTGAAGCAAGCTGACCGTCGC TGGGCAATGCATCTCCGTGATGTAATCGTTCGCAAAGGATTTTCTGAGTA CTTGTCTTCTTGAGGAATTCCAAACTACGGGAGTGGAACTCTCGTGGTAC CTAGGGTGCGCGTTTGAGCGTGATAGGAAAGGAGGCGTTCTTCGCGCATC GCAGAGAGCGTTTATCGAGTCTGTGGTCAGCCGATATGGAGTTGAGGCAG TGTCTGATCTCCCGGCTTCTCAATCGGCAGATCTCGGCCCTAGGAGGGAC GACGAGCCGGTCTGTGATAAACCGGTTCGTGCGGCTGTTGGTAGTTTGAT TTAGTTAGGTGGTATGACGCGGCCAGACATAGCCAATGTGGTTAGGGCAG TAGCACGTCAAGCCCACGATCCTGCTGGGAGGCACTGGCGATCCGCTAGG AAAATACTCGCGTACCTGAACAAAACGAAAGACCTAGGGTTGATGTTCGT AAAGGATGGCGACCGAAAGCTCTCCGTGTATGTAGACGCGGATTAGGCGT TCAGTGTCCGGGGTGGCGGTGATGGTAGGGGGCACAGTTGTGAATGCTAG TAGTACTACGCAGCACTGTGTTACTCTTTCTGCTAGTGAGGCAGAATACG TAGCCATGGCACAGGGAGCAAAGACCGCGTTATTCACAAAGGCCGTGTTG GATTTCTTGCAGCCAGAACTTGCCAATGAGACTATTGACTTGTTTGAAAA CAACCAAGGAGCAATCGCCATAGCAGAAAACCCAATCAGCAGGGGGCGGA CGAAGCACATTGACGTACGTTATCACTTTATCAGGGAGTTAGTAGAACGT AAGGTCCTTAACATCCAGTACACGGAGTCTAGCAAGCAACATGCAGACAT TCTGACGAAGCCGCTTGGACTAGAGGCTTTTGCTAGACACCGTTCGTTTC TGATGAATTTGCCTGAGTGATTTGTTTTGTTTCTTGAGTTGAAAGTAGGC TCTTGTAAGGGATGTTTCAGCGGGGAGGGAGTTTTATCCCGTAAAGCCGG GTTATCTTCTCTTTCGTACTCTCAACTATTGTTTGAAGAACCCGCACAAG ACGTACATCGGTGACGTTCGTTGCGATGCAGGGAGGGTGTTTGATGATAC ATCTTACTTTGTAACCGTTGGTTTATCCAATACGGTGCAACTGCGGTTGT TGGGAAAGTATTCAGTGATGTTGGAACTCCTAGAGTCTCTTTTGTGTTGC CTAACTCGGCACTCCTTCTTTCTTGTTCTCCTTCTTCTTTTCTTCTTCTG TCCTTTTCCGAATGTAACAAAGACGTGTTTACTTTATTCAACCTCCGTGT GTCAAGTCGTACGGAACCAGGCCTATACCAAGAGTAGATGTGTTGTGTAC TACTGTGGGAGCGACTAAACGGACCTATACAGGGCAGCAGGCACCCTCAG GGCTGGAGCGAACGTAAGCAAGTATTTATCATATCCTGTGATGTGGAAGG TAGGTTTATTGTGAGCAGTTGGATATTAACGTGTGCGGCTAACAGAGATA TTATTCAAATGTGGCGTACCCATACCCGTAGTAGGTCCGCTGCGTATGGT TCTGCTGCTGTACGGTTCGCTCGTCGTTCGGCGCTGCATGTCTTGCTGCT CTATGATTATCACGCCACCGATGAATGTGTTCTCTCTGGAGTCGTGTGAA GCGTGGAACTGGTTCGTTGTGGAATGTAATTCTATTGTCAGCAATTGGAT GCTAACGTGCGGGGCCTACTGTGATTTCAAGATATTATTCAAATGTAGCC CGTACCGTACCAAGTCCGCTGCGGTATGGTTCGCCCCATGGTTCGCTGCT GTATTGTCGCCTCATGATTC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig102:822267..824786+

>mRNA_A-nodosum_M_contig102.115.1 ID=mRNA_A-nodosum_M_contig102.115.1|Name=mRNA_A-nodosum_M_contig102.115.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at A-nodosum_M_contig102:822267..824786+ (Ascophyllum nodosum dioecious)
ATGAGGGCAGAGTTCAAGGGACTTGTTGGTCTGAACACGTTTGAATTCGT
AGATATAGTACCTGATGGTGTCAATGTCGTAAGTGCTCGATGGGTGTTTG
CCTGGAAGGTAGACAAAGATGGCAACATCGTGAAACCAAAAGCGAGGCTA
GTTGCAAGGGGCTTTAGTCAGGTACATACCGTAGATTTCTTGGAAACTTA
TGCTCCTACTCCGGCTGCGTCCAGTGTTAAACTATTGGTAGCTATTGCTG
TCAAAAATGACTGGGAATTACGACAGCTAGATGTAAAACAAGCATTCATT
CAGGCTGATTTGGACTTCAATGTCTTCATGAAACTTCCTGATGGCTGTGG
AGACAAAAGTGGCAAAGTAGTGAAACTCAATAAGTCAGTGTATAGCCTGA
AGCAAGCTGACCGTCGCTGGGCAATGCATCTCCGTGATGTAATCGTTCGC
AAAGGATTTTCTGAGTACTTGTCTTCTTGA
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