prot_A-nodosum_M_contig102.115.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig102.115.1
Unique Nameprot_A-nodosum_M_contig102.115.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length160
Homology
BLAST of mRNA_A-nodosum_M_contig102.115.1 vs. uniprot
Match: A0A6H5KPV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV1_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 1.560e-49
Identity = 90/158 (56.96%), Postives = 111/158 (70.25%), Query Frame = 0
Query:    1 MRAEFKGLVGLNTFEFVDIVPDGVNVVSARWVFAWKVDKDGNIVKPKARLVARGFSQVHTVDFLETYAPTPAASSVKLLVAIAVKNDWELRQLDVKQAFIQADLDFNVFMKLPDGCGDKSGKVVKLNKSVYSLKQADRRWAMHLRDVIVRKGFSEYLS 158
            M AEF+GLV   TF     VP G NV+ ARWVF WK D+ G IVK KARLVA+GF Q H +D+L T++PT  A+S++LLVA+A K + EL  LD++QAF+Q  LD  VFMKLP GCG  SGKVV+LNKS+Y LKQA R + M L   + R GF + LS
Sbjct:  186 MSAEFEGLVRAGTFSLAVKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGIDYLLTFSPTANAASIRLLVALACKYNLELLHLDIEQAFVQTKLDHAVFMKLPPGCGTMSGKVVRLNKSLYGLKQASRTFYMRLVSDLKRIGFEQSLS 343          
BLAST of mRNA_A-nodosum_M_contig102.115.1 vs. uniprot
Match: A0A6H5LDZ0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDZ0_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 3.350e-48
Identity = 85/158 (53.80%), Postives = 112/158 (70.89%), Query Frame = 0
Query:    1 MRAEFKGLVGLNTFEFVDIVPDGVNVVSARWVFAWKVDKDGNIVKPKARLVARGFSQVHTVDFLETYAPTPAASSVKLLVAIAVKNDWELRQLDVKQAFIQADLDFNVFMKLPDGCGDKSGKVVKLNKSVYSLKQADRRWAMHLRDVIVRKGFSEYLS 158
            M AE +GL+   TF     +P+G NV+ ARWVF WK D+ G IVK KARLVA+GF Q H VD+LET++PT  A+S++L+VA+A K + EL  LD++QAF+Q+ LD  VFMKLP GC   SGK+V+LNKS+Y LKQA R +   L   ++R GF + LS
Sbjct:  437 MSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLS 594          
BLAST of mRNA_A-nodosum_M_contig102.115.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 3.810e-48
Identity = 85/158 (53.80%), Postives = 112/158 (70.89%), Query Frame = 0
Query:    1 MRAEFKGLVGLNTFEFVDIVPDGVNVVSARWVFAWKVDKDGNIVKPKARLVARGFSQVHTVDFLETYAPTPAASSVKLLVAIAVKNDWELRQLDVKQAFIQADLDFNVFMKLPDGCGDKSGKVVKLNKSVYSLKQADRRWAMHLRDVIVRKGFSEYLS 158
            M AE +GL+   TF     +P+G NV+ ARWVF WK D+ G IVK KARLVA+GF Q H VD+LET++PT  A+S++L+VA+A K + EL  LD++QAF+Q+ LD  VFMKLP GC   SGK+V+LNKS+Y LKQA R +   L   ++R GF + LS
Sbjct:  501 MSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLS 658          
BLAST of mRNA_A-nodosum_M_contig102.115.1 vs. uniprot
Match: A0A6H5KHE8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE8_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 3.840e-48
Identity = 85/158 (53.80%), Postives = 112/158 (70.89%), Query Frame = 0
Query:    1 MRAEFKGLVGLNTFEFVDIVPDGVNVVSARWVFAWKVDKDGNIVKPKARLVARGFSQVHTVDFLETYAPTPAASSVKLLVAIAVKNDWELRQLDVKQAFIQADLDFNVFMKLPDGCGDKSGKVVKLNKSVYSLKQADRRWAMHLRDVIVRKGFSEYLS 158
            M AE +GL+   TF     +P+G NV+ ARWVF WK D+ G IVK KARLVA+GF Q H VD+LET++PT  A+S++L+VA+A K + EL  LD++QAF+Q+ LD  VFMKLP GC   SGK+V+LNKS+Y LKQA R +   L   ++R GF + LS
Sbjct:  645 MSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLS 802          
BLAST of mRNA_A-nodosum_M_contig102.115.1 vs. uniprot
Match: A0A6H5JQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQD0_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 1.430e-47
Identity = 83/158 (52.53%), Postives = 109/158 (68.99%), Query Frame = 0
Query:    1 MRAEFKGLVGLNTFEFVDIVPDGVNVVSARWVFAWKVDKDGNIVKPKARLVARGFSQVHTVDFLETYAPTPAASSVKLLVAIAVKNDWELRQLDVKQAFIQADLDFNVFMKLPDGCGDKSGKVVKLNKSVYSLKQADRRWAMHLRDVIVRKGFSEYLS 158
            M AE +GL+   TF     VP G NV+ ARWVF W  D+   IVK KARLVA+GF Q + VD+LET++PT  A+S +L+VA+A K + EL   D++QAF+Q++LD+ VFMKLP GCG  SGKVV+LNKS+Y LKQA R +   L   + R GF + +S
Sbjct:    1 MSAEVEGLIRAGTFTLAAKVPIGCNVIDARWVFKWNADETAKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMS 158          
BLAST of mRNA_A-nodosum_M_contig102.115.1 vs. uniprot
Match: A0A6H5JP36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP36_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 2.010e-47
Identity = 85/158 (53.80%), Postives = 111/158 (70.25%), Query Frame = 0
Query:    1 MRAEFKGLVGLNTFEFVDIVPDGVNVVSARWVFAWKVDKDGNIVKPKARLVARGFSQVHTVDFLETYAPTPAASSVKLLVAIAVKNDWELRQLDVKQAFIQADLDFNVFMKLPDGCGDKSGKVVKLNKSVYSLKQADRRWAMHLRDVIVRKGFSEYLS 158
            M AE +GL+   TF     +P+G NV+ ARWVF WK D+ G IVK KARLVA+GF Q H VD+LET++PT  A+S++L+VA+A K + EL  LD++QAF+Q+ LD  VFMKLP GC   SGK+V+LNKS Y LKQA R +   L   ++R GF + LS
Sbjct:  165 MCAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSWYGLKQASRTFYKRLVSDLLRIGFEQSLS 322          
BLAST of mRNA_A-nodosum_M_contig102.115.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 2.070e-47
Identity = 84/158 (53.16%), Postives = 110/158 (69.62%), Query Frame = 0
Query:    1 MRAEFKGLVGLNTFEFVDIVPDGVNVVSARWVFAWKVDKDGNIVKPKARLVARGFSQVHTVDFLETYAPTPAASSVKLLVAIAVKNDWELRQLDVKQAFIQADLDFNVFMKLPDGCGDKSGKVVKLNKSVYSLKQADRRWAMHLRDVIVRKGFSEYLS 158
            M AE +GL+   TF     +P+G NV+ ARWVF WK D+ G IVK KARLVA+GF Q H VD+LET++PT  A+S++L+VA+A K + EL  LD++QAF Q+ LD  V MKLP GC   SGK+V+LNKS+Y LKQA R +   L   ++R GF + LS
Sbjct:  232 MSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFFQSKLDHEVLMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLS 389          
BLAST of mRNA_A-nodosum_M_contig102.115.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 2.810e-47
Identity = 87/158 (55.06%), Postives = 110/158 (69.62%), Query Frame = 0
Query:    1 MRAEFKGLVGLNTFEFVDIVPDGVNVVSARWVFAWKVDKDGNIVKPKARLVARGFSQVHTVDFLETYAPTPAASSVKLLVAIAVKNDWELRQLDVKQAFIQADLDFNVFMKLPDGCGDKSGKVVKLNKSVYSLKQADRRWAMHLRDVIVRKGFSEYLS 158
            M AE +GL+   TF     +P G NV+ ARWVF WK D+ G IVK KARLVA+GF Q + VD+LET++PT  A+S++LLVA+A K D EL   D++QAF+Q+ LD  VFMKLP GCG  SGKVV+LNKS+Y LKQA R +   L   + R GF + LS
Sbjct:  799 MSAEVEGLIRAGTFTLAVKIPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFRQKYGVDYLETFSPTANAASIRLLVALACKYDLELLHWDIEQAFVQSKLDHEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSDLKRIGFEQSLS 956          
BLAST of mRNA_A-nodosum_M_contig102.115.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 1.300e-46
Identity = 85/158 (53.80%), Postives = 111/158 (70.25%), Query Frame = 0
Query:    1 MRAEFKGLVGLNTFEFVDIVPDGVNVVSARWVFAWKVDKDGNIVKPKARLVARGFSQVHTVDFLETYAPTPAASSVKLLVAIAVKNDWELRQLDVKQAFIQADLDFNVFMKLPDGCGDKSGKVVKLNKSVYSLKQADRRWAMHLRDVIVRKGFSEYLS 158
            M AE +GL+   TF     VP G NV+ ARWVF WK D+ G IVK KARLVA+GF Q + VD+LET++PT  A+S +L+VA+A K + EL   D++QAF+Q++LD+ VFMKLP GCG  SGKVV+LNKS+Y LKQA R +   L   + R GF + +S
Sbjct:  734 MSAEVEGLIRAGTFTLAAKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMS 891          
BLAST of mRNA_A-nodosum_M_contig102.115.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 1.690e-46
Identity = 78/155 (50.32%), Postives = 107/155 (69.03%), Query Frame = 0
Query:    1 MRAEFKGLVGLNTFEFVDIVPDGVNVVSARWVFAWKVDKDGNIVKPKARLVARGFSQVHTVDFLETYAPTPAASSVKLLVAIAVKNDWELRQLDVKQAFIQADLDFNVFMKLPDGCGDKSGKVVKLNKSVYSLKQADRRWAMHLRDVIVRKGFSE 155
            MR EF G +G  TF FVD  P+G   VS++W F WK +KDG I K KARLVARGFSQ+  VD+  + +P P+++S+KL++A+A +   +L   DVKQAF  A LD +VF++LP GCG+KS KVVK  +++Y LKQ+ R+W  H  D +V  GF +
Sbjct:   19 MREEFDGHLGTGTFSFVDGTPEGRRPVSSKWRFTWKTNKDGKIEKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHKVVKAERAIYGLKQSGRQWGYHAADTLVENGFEQ 173          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig102.115.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPV1_9PHAE1.560e-4956.96Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5LDZ0_9PHAE3.350e-4853.80CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J594_9PHAE3.810e-4853.80Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KHE8_9PHAE3.840e-4853.80CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JQD0_9PHAE1.430e-4752.53Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JP36_9PHAE2.010e-4753.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV80_9PHAE2.070e-4753.16Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JB16_9PHAE2.810e-4755.06Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JRL9_9PHAE1.300e-4653.80Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JCG0_9PHAE1.690e-4650.32Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 12..154
e-value: 3.3E-38
score: 131.7
NoneNo IPR availablePANTHERPTHR45895FAMILY NOT NAMEDcoord: 27..153

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig102contigA-nodosum_M_contig102:822550..823029 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig102.115.1mRNA_A-nodosum_M_contig102.115.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig102 822267..824786 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig102.115.1 ID=prot_A-nodosum_M_contig102.115.1|Name=mRNA_A-nodosum_M_contig102.115.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=160bp
MRAEFKGLVGLNTFEFVDIVPDGVNVVSARWVFAWKVDKDGNIVKPKARL
VARGFSQVHTVDFLETYAPTPAASSVKLLVAIAVKNDWELRQLDVKQAFI
QADLDFNVFMKLPDGCGDKSGKVVKLNKSVYSLKQADRRWAMHLRDVIVR
KGFSEYLSS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2