mRNA_A-nodosum_M_contig102.115.1 (mRNA) Ascophyllum nodosum dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig102.115.1 vs. uniprot
Match: A0A6H5JXU1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU1_9PHAE) HSP 1 Score: 197 bits (502), Expect = 1.730e-52 Identity = 106/251 (42.23%), Postives = 147/251 (58.57%), Query Frame = 3 Query: 786 ELSWYLGCAFERDRKGGVLRASQRAFIESVVSRYGVEAVSDLPASQSADLGPRRDDEPVCDKPVRAAVGSLI*LGGMTRPDIANVVRAVARQAHDPAGRHWRSARKILAYLNKTKDLGLMFVKDGDRKLSVYVDAD*AFSTID---------------------------------LFENNQGAIAIAENPISRGRTKHIDVRYHFIRELVERKVLNIQYTESSKQHADILTKPLGLEAFARHRSFLMNLP 1439 E +WY GCA D + G+ + SQ A+IES++ R+ V ++ +PA+ ADLGP+RDDEP DKPVR A+G L+ +TRPDIA + + + AH P GR W + +I++YLN TKD G+ +V+ L+V+VDA A S +D + E+N+GA+A+ ENP S R+KHIDVR+HFIREL E + +Y + +QHAD+LTK LG E HR LMNLP Sbjct: 160 ECTWYDGCAIVMDVENGITKLSQTAYIESMLKRFDVTTIAFIPAATDADLGPKRDDEPAVDKPVREAIGCLM-WTKLTRPDIALPLNKLQKIAHSPTGRIWNALVRIMSYLNFTKDFGITYVRGSGLDLNVFVDASYADSEVDRRSTTGLAGVKEALFVRGVLSFIAPETSGAKIKVLEDNKGALALIENPFSSARSKHIDVRFHFIRELFESGKITAEYVPTGEQHADMLTKVLGREKLEYHRKALMNLP 409
BLAST of mRNA_A-nodosum_M_contig102.115.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE) HSP 1 Score: 192 bits (487), Expect = 4.310e-49 Identity = 109/280 (38.93%), Postives = 152/280 (54.29%), Query Frame = 3 Query: 786 ELSWYLGCAFERDRKGGVLRASQRAFIESVVSRYGVEAVSDLPASQSADLGPRRDDEPVCDKPVRAAVGSLI*LGGMTRPDIANVVRAVARQAHDPAGRHWRSARKILAYLNKTKDLGLMFVKDGDRKLSVYVDAD*AF----------------------------------------------------------------STIDLFENNQGAIAIAENPISRGRTKHIDVRYHFIRELVERKVLNIQYTESSKQHADILTKPLGLEAFARHRSFLMN 1433 E W+ GCA ERD + G LR SQ A+I+S+V+R+ V++ S +PAS D+GP+RDDE + PVR A+GS++ + +RPDI+ VRAVAR AH PA RHW++ KILAYL +T+DLG+ + + L+VYVDA A S+I + E+NQGA+A+ +NP+S R+KHIDVRYHFIR L ++I++ +S+QHAD+LTK L + HR LMN Sbjct: 227 ECVWFDGCAVERDLEAGTLRISQTAYIDSIVNRFDVQSTSSIPASPGVDIGPKRDDESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMN 506
BLAST of mRNA_A-nodosum_M_contig102.115.1 vs. uniprot
Match: A0A6H5K123_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K123_9PHAE) HSP 1 Score: 182 bits (463), Expect = 1.920e-48 Identity = 105/264 (39.77%), Postives = 158/264 (59.85%), Query Frame = 3 Query: 735 KDFLSTCLLEEFQTTGV-ELSWYLGCAFERDRKGGVLRASQRAFIESVVSRYGVEAVSDLPASQSADLGPRRDDEPVCDKPVRAAVGSLI*LGGMTRPDIANVVRAVARQAHDPAGRHWRSARKILAYL-----NKTKDLGLM--------------FVKDGD--------RKLSVYVDAD*AFSTIDLFENNQGAIAIAENPISRGRTKHIDVRYHFIRELVERKVLNIQYTESSKQHADILTKPLGLEAFARHRSFLMNLPE 1442 K+ L++ L ++F T + E W+ CA +RD + G L S+ A+I+S+V R+ V++ S +PAS DLGPRRDDE + PVR A+GS++ + +RPD++ RAVAR AH PA RHW + +KIL YL + T +G+M ++ G+ R + V + S+I + E+NQGAIA+ +NP+S GRT IDVR+HFIR L+ +++++ +++QHAD+LTK L + HR LMNLPE Sbjct: 27 KELLAS-LNKKFPTKNLGECEWFDRCAIDRDVEAGTLNISETAYIDSMVKRFDVQSTSRIPASPGIDLGPRRDDEKGGEWPVREAIGSMMWVSAFSRPDVSFAARAVARHAHAPARRHWDAIQKILCYLKGTSASPTTGIGVMAGRSIGSLSSTEAEYIAAGEGVKDALFVRAVLSIVAPETRGSSIQVLEDNQGAIALVQNPLSSGRTNQIDVRFHFIRGLLRSGGVSVRFVPTTEQHADLLTKALSRASLQYHRRKLMNLPE 289
BLAST of mRNA_A-nodosum_M_contig102.115.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE) HSP 1 Score: 195 bits (496), Expect = 4.050e-48 Identity = 111/283 (39.22%), Postives = 154/283 (54.42%), Query Frame = 3 Query: 786 ELSWYLGCAFERDRKGGVLRASQRAFIESVVSRYGVEAVSDLPASQSADLGPRRDDEPVCDKPVRAAVGSLI*LGGMTRPDIANVVRAVARQAHDPAGRHWRSARKILAYLNKTKDLGLMFVKDGDRKLSVYVDAD*AF----------------------------------------------------------------STIDLFENNQGAIAIAENPISRGRTKHIDVRYHFIRELVERKVLNIQYTESSKQHADILTKPLGLEAFARHRSFLMNLPE 1442 E W+ GCA ERD + G LR SQ A+I+S+V R+ V++ S +PA+ ADLGP+R+DE + PVR A+GS++ + +RPD++ VRAVAR AH PA RHW + +KIL YL T+DLG+ + + L+VYVDA A S+I + E+NQGAIA+ +NP+S GRTKHIDVRYHFIR L +++++ +++QHAD+LTK L + HR LMNLPE Sbjct: 964 ECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNLPE 1246
BLAST of mRNA_A-nodosum_M_contig102.115.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 195 bits (496), Expect = 5.080e-48 Identity = 111/283 (39.22%), Postives = 154/283 (54.42%), Query Frame = 3 Query: 786 ELSWYLGCAFERDRKGGVLRASQRAFIESVVSRYGVEAVSDLPASQSADLGPRRDDEPVCDKPVRAAVGSLI*LGGMTRPDIANVVRAVARQAHDPAGRHWRSARKILAYLNKTKDLGLMFVKDGDRKLSVYVDAD*AF----------------------------------------------------------------STIDLFENNQGAIAIAENPISRGRTKHIDVRYHFIRELVERKVLNIQYTESSKQHADILTKPLGLEAFARHRSFLMNLPE 1442 E W+ GCA ERD + G LR SQ A+I+S+V R+ V++ S +PA+ ADLGP+R+DE + PVR A+GS++ + +RPD++ VRAVAR AH PA RHW + +KIL YL T+DLG+ + + L+VYVDA A S+I + E+NQGAIA+ +NP+S GRTKHIDVRYHFIR L +++++ +++QHAD+LTK L + HR LMNLPE Sbjct: 1343 ECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNLPE 1625
BLAST of mRNA_A-nodosum_M_contig102.115.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 195 bits (496), Expect = 5.380e-48 Identity = 111/283 (39.22%), Postives = 154/283 (54.42%), Query Frame = 3 Query: 786 ELSWYLGCAFERDRKGGVLRASQRAFIESVVSRYGVEAVSDLPASQSADLGPRRDDEPVCDKPVRAAVGSLI*LGGMTRPDIANVVRAVARQAHDPAGRHWRSARKILAYLNKTKDLGLMFVKDGDRKLSVYVDAD*AF----------------------------------------------------------------STIDLFENNQGAIAIAENPISRGRTKHIDVRYHFIRELVERKVLNIQYTESSKQHADILTKPLGLEAFARHRSFLMNLPE 1442 E W+ GCA ERD + G LR SQ A+I+S+V R+ V++ S +PA+ ADLGP+R+DE + PVR A+GS++ + +RPD++ VRAVAR AH PA RHW + +KIL YL T+DLG+ + + L+VYVDA A S+I + E+NQGAIA+ +NP+S GRTKHIDVRYHFIR L +++++ +++QHAD+LTK L + HR LMNLPE Sbjct: 1506 ECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNLPE 1788
BLAST of mRNA_A-nodosum_M_contig102.115.1 vs. uniprot
Match: A0A6H5JSU5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSU5_9PHAE) HSP 1 Score: 191 bits (485), Expect = 8.970e-48 Identity = 105/265 (39.62%), Postives = 149/265 (56.23%), Query Frame = 3 Query: 786 ELSWYLGCAFERDRKGGVLRASQRAFIESVVSRYGVEAVSDLPASQSADLGPRRDDEPVCDKPVRAAVGSLI*LGGMTRPDIANVVRAVARQAHDPAGRHWRSARKILAYLNKTKDLGLMFVKDGDRKLSVYVDAD*AFST-----------------------------------------------IDLFENNQGAIAIAENPISRGRTKHIDVRYHFIRELVERKVLNIQYTESSKQHADILTKPLGLEAFARHRSFLMNLP 1439 E W+ GCA ERD + G LR SQ A+I+S+V R+ V++ S +PAS S DLGP RDDE PVR A+GS++ + +RPD++ VRAVA AH PA RHW + +KIL YL +T+D+G+ + + +L+VYVDA A + I + E+NQG I + +NP+S GRTKHIDVR+HFIR L +++++ +++QHAD+LTK ++ HR LMNLP Sbjct: 449 ECEWFDGCATERDVEAGTLRISQTAYIDSMVKRFDVQSTSRIPASPSVDLGPERDDEKGGKCPVREAIGSMMCVSTFSRPDVSFAVRAVACHAHAPAKRHWDAIQKILGYLKETRDVGITYKRGSGLELAVYVDASYADTENRRSVSGLATMVGGTVVSHGSKTKSIVSLSSTEAKYIAAGEGVKEAFIQVLEDNQGGIELVQNPLSSGRTKHIDVRFHFIRGLFRSGDISVKFVPTTEQHADLLTKARSRDSLQYHRRKLMNLP 713
BLAST of mRNA_A-nodosum_M_contig102.115.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE) HSP 1 Score: 190 bits (482), Expect = 1.580e-47 Identity = 107/264 (40.53%), Postives = 150/264 (56.82%), Query Frame = 3 Query: 735 KDFLSTCLLEEFQTTGV-ELSWYLGCAFERDRKGGVLRASQRAFIESVVSRYGVEAVSDLPASQSADLGPRRDDEPVCDKPVRAAVGSLI*LGGMTRPDIANVVRAVARQAHDPAGRHWRSARKILAYLNKTKDLGLMFVKDGDRKLSVYVDAD*AFSTID----------------------------LFENNQGAIAIAENPISRGRTKHIDVRYHFIRELVERKVLNIQYTESSKQHADILTKPLGLEAFARHRSFLMNLP 1439 ++ L L ++F V E +WY GCA D + G+ + SQ A+IES++ R+ V + PA+ ADLGP+RDDEP DKPVR A+G L+ +TRPDIA + + + AH P GR W + +I++YLN TKD G+ +V LSV+VDA A + +D + E+N+G +A+ E P S R+KHIDVR+HFIREL + + +Y + +QHAD+LTK LG E HR LMNLP Sbjct: 422 REELFASLNKKFPVKDVGECTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDVTTTAFTPAATDADLGPKRDDEPAVDKPVREAIGCLM-WTKLTRPDIALPLNKLQKIAHSPTGRMWNALVRIMSYLNFTKDFGITYVLGSGLDLSVFVDASYADNEVDKQPGVKGALFVRGVLSFIAPETSGAKIKVLEDNKGTLALIEPPSSSARSKHIDVRFHFIRELFKSGKITTEYVPTGEQHADMLTKVLGREKVEYHRKALMNLP 684
BLAST of mRNA_A-nodosum_M_contig102.115.1 vs. uniprot
Match: A0A6H5KV13_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV13_9PHAE) HSP 1 Score: 193 bits (490), Expect = 2.460e-47 Identity = 102/234 (43.59%), Postives = 150/234 (64.10%), Query Frame = 3 Query: 744 LSTCLLEEFQTTGV-ELSWYLGCAFERDRKGGVLRASQRAFIESVVSRYGVEAVSDLPASQSADLGPRRDDEPVCDKPVRAAVGSLI*LGGMTRPDIANVVRAVARQAHDPAGRHWRSARKILAYLNKTKDLGLMFVKDGDRKLSVYVDAD*AFSTIDLFENNQGAIAIAENPISRGRTKHIDVRYHFIRELVERKVLNIQYTESSKQHADILTKPLGLEAFARHRSFLMNLPE 1442 L L E+F + E W+ GCA ERD + G L+ S+ A+I+S+V R+ V++ S +PA+ ADLGP+R+DE + PVR A+GS++ + +RPD++ VRAVAR AH PA RHW + +KIL YL T+D + + L+V I + E+NQGAIA+ +NP+S GRTKHIDVR++FIR L +++++ +++QHA++LTK L + HR LMNLPE Sbjct: 1104 LLASLNEKFLNNNLGECQWFDGCAIERDVEAGTLKISRTAYIDSMVKRFDVQSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDNRHHYQRGSGLGLAV----------IQVLEDNQGAIALVQNPLSSGRTKHIDVRFYFIRGLFRSGEISVKFVPTTEQHANLLTKALSRASLQYHRRKLMNLPE 1327
BLAST of mRNA_A-nodosum_M_contig102.115.1 vs. uniprot
Match: A0A6H5K274_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K274_9PHAE) HSP 1 Score: 190 bits (483), Expect = 2.620e-47 Identity = 108/283 (38.16%), Postives = 154/283 (54.42%), Query Frame = 3 Query: 786 ELSWYLGCAFERDRKGGVLRASQRAFIESVVSRYGVEAVSDLPASQSADLGPRRDDEPVCDKPVRAAVGSLI*LGGMTRPDIANVVRAVARQAHDPAGRHWRSARKILAYLNKTKDLGLMFVKDGDRKLSVYVDAD*AF----------------------------------------------------------------STIDLFENNQGAIAIAENPISRGRTKHIDVRYHFIRELVERKVLNIQYTESSKQHADILTKPLGLEAFARHRSFLMNLPE 1442 E W+ GCA ERD + G LR SQ A+I+S+V+R+ V++ S +PA+ ADLGP+R+DE + PVR A+GS++ + +RPD++ VRAVAR AH PA RHW + +KIL YL T+DLG+ + + L+VYVDA A S+I + E+NQGA+A+ +NP+S GRT HIDVR+HFIR L +++++ +++QHAD+LTK L + HR LMNLPE Sbjct: 475 ECQWFDGCAIERDVEAGTLRISQTAYIDSMVARFDVQSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSMEAEYIAAGEGVKEALFVRAVLLFVAPETRGSSIQVLEDNQGAMALVQNPLSSGRTTHIDVRFHFIRGLFGSGDISVKFVPTTEQHADLLTKALRKASLQYHRRKLMNLPE 757 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig102.115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig102.115.1 >prot_A-nodosum_M_contig102.115.1 ID=prot_A-nodosum_M_contig102.115.1|Name=mRNA_A-nodosum_M_contig102.115.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=160bp MRAEFKGLVGLNTFEFVDIVPDGVNVVSARWVFAWKVDKDGNIVKPKARLback to top mRNA from alignment at A-nodosum_M_contig102:822267..824786+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig102.115.1 ID=mRNA_A-nodosum_M_contig102.115.1|Name=mRNA_A-nodosum_M_contig102.115.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2520bp|location=Sequence derived from alignment at A-nodosum_M_contig102:822267..824786+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig102:822267..824786+ >mRNA_A-nodosum_M_contig102.115.1 ID=mRNA_A-nodosum_M_contig102.115.1|Name=mRNA_A-nodosum_M_contig102.115.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at A-nodosum_M_contig102:822267..824786+ (Ascophyllum nodosum dioecious)back to top |