mRNA_A-nodosum_M_contig1012.9.1 (mRNA) Ascophyllum nodosum dioecious
|
Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1012.9.1 vs. uniprot
Match: D7G2R4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2R4_ECTSI) HSP 1 Score: 362 bits (929), Expect = 2.610e-117 Identity = 192/345 (55.65%), Postives = 243/345 (70.43%), Query Frame = 1
Query: 1 SSFGGAGIVAAVAVASTALLLDYVGQRR-KLRMAASSQVDKKEADKPSQNGTATNADYDGNGKKLGAVVDARPLPRSDAAGLV-------RRACVLSACGLTAVGCHRIGATVLARSSVTIGCLVACLPYLFRSSKYCQDSSLGCVIEDGDRRRPVSDILVWTSLVYMVPAGYGIMVHQYGIAVLQMLTTVGSALFHLSRETKFFNLDNVFATSLLNTTLWGFYLGVKHAGIWWYVATIGLAGPSAIYFIVRCGMPGLVCQHPSGRGLCRKSNPKYTIFHMLWHLASGSITLVTIHFFAANFPGTEAGGGWFRDFHGLPVVPTVSLAASALINFIGNYVGIMPLD 1011
SSF G ++A + +++TAL++D+ R +L+ S ++ ++ N DG+G G A P S A+G +RACVL+ + A+ CHR+G+ LAR TIG LVACLP+L RSSKY +D LGC++E GD+RRP++D+LVWTS VY +P+ YG+ HQYGIA LQ++TT+GS LFHL+RETKFFNLDNVFATSLL+TT W YLGV H G+WWYV IGL GP AI+ IVRCGMPGLVC+HP+G GLCR+SNP+Y FHMLWHL+SG TL+TIHFF FP EAGGGWF F +PVVPTV+LA SALIN GN VG+MPL+
Sbjct: 35 SSFNGPTVLAILVISATALVVDFAKFRAAELKSTGRSDPAAAPQERGREHAQVPNG-LDGHGGDGGGGAVAPPERLSRASGSSAENRVHRKRACVLAWWIVGALICHRLGSMTLARVFATIGSLVACLPHLLRSSKYRRDRGLGCLLETGDKRRPLTDMLVWTSFVYCLPSVYGLYAHQYGIAGLQLMTTIGSTLFHLTRETKFFNLDNVFATSLLSTTAWSLYLGVTH-GVWWYVVVIGLGGPFAIFCIVRCGMPGLVCRHPAGSGLCRRSNPEYDFFHMLWHLSSGLGTLITIHFFEVYFPAEEAGGGWFYFFPDVPVVPTVALALSALINLYGNRVGVMPLE 377
BLAST of mRNA_A-nodosum_M_contig1012.9.1 vs. uniprot
Match: A0A835Z7G3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7G3_9STRA) HSP 1 Score: 230 bits (586), Expect = 7.400e-66 Identity = 120/225 (53.33%), Postives = 150/225 (66.67%), Query Frame = 1
Query: 337 IGCLVACLPYLFRSSKYCQDSSLGCVIEDGDRRRPVSDILVWTSLVYMVPAGYGIMVHQYGIAVLQMLTTVGSALFHLSRETKFFNLDNVFATSLLNTTLWGFYLGVKHAGIWWYVATIGLAGPSAIYFIVRCGMPGLVCQHPSGRGLCRK-SNPKYTIFHMLWHLASGSITLVTIHFFAANFPGTEAGGGWFRDFHGLPVVPTVSLAASALINFIGNYVGIMPL 1008
+GC ++ PYL RSS+Y +D L C + D RR + D LVWTSLVY VPA YG+ HQYG+A LQ TTVGS LFH +RET++FNLDNV A +LL TT W L + A +W + A + P A YF+V CGMPG+VC PSG G R+ SNP Y +HMLWHL SG T+ +IHFFA+ +P +AGGG F F +PVVP VSL SA +N GN+ G +PL
Sbjct: 191 LGCALS--PYLLRSSRYRRDPRLRCRLGRRDVRRRLRDPLVWTSLVYAVPALYGVAAHQYGVAALQAATTVGSTLFHRARETRYFNLDNVGALALLFTTAWSLALAAR-ARVWAHAAVVLAGTPLAGYFMVACGMPGVVCACPSGDGTLRRASNPLYDHYHMLWHLVSGFGTIASIHFFASRYPHLDAGGGHFEHFPDVPVVPFVSLLLSAAVNVYGNWAGALPL 412
BLAST of mRNA_A-nodosum_M_contig1012.9.1 vs. uniprot
Match: A0A7S2XVH3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVH3_9STRA) HSP 1 Score: 175 bits (444), Expect = 1.460e-46 Identity = 95/217 (43.78%), Postives = 132/217 (60.83%), Query Frame = 1
Query: 358 LPYLFRSSKYCQDSSLGCVIEDGDRRRPVSDILVWTSLVYMVPAGYGIMVHQYGIAVLQMLTTVGSALFHLSRETKFFNLDNVFATSLLNTTLWGFYLGVKHAGIWWYVATIGLAGPSAIYFIVRCGMPGLVCQHPSGRGLCRKSNPKYTIFHMLWHLASGSITLVTIHFFAANFPGTEAGGGWFRDFHGLPVVPTVSLAASALINFIGNYVGIMPL 1008
+PYL ++S D S G + ++RR +D LV+TSL YM Y V QYGIA+LQ+ T++GS L+HL+RET FFN DN+ ATSLL T +G YL + W +A G+ AI + +CGMPG VC+ G+ C P + H WH+AS T+++++FF NFP EAG GWF + LP+ PT+++ S + NFIGN G+MPL
Sbjct: 96 IPYLAKASPLRSDPSRGIKLSPKEKRRSFADPLVFTSLFYMFAGIYAFSVGQYGIALLQIYTSMGSTLYHLTRETMFFNCDNIGATSLLLLTAYGLYLSLGIDLGWTILAAAGIPLGGAI--LHKCGMPGEVCK---GKRTCCSEYPSW---HSAWHVASSFGTVISVYFFEKNFPDHEAGAGWFAEMPFLPIAPTIAVVISVVQNFIGNKAGVMPL 304
BLAST of mRNA_A-nodosum_M_contig1012.9.1 vs. uniprot
Match: A0A7S1XWR7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XWR7_9STRA) HSP 1 Score: 129 bits (325), Expect = 2.190e-30 Identity = 89/251 (35.46%), Postives = 127/251 (50.60%), Query Frame = 1
Query: 283 AVGCHRIGATVLARSSVTIGCLVACLPYLFRSSKYCQD-SSLG---CVIEDGDRRRPVSDILVWTSLV-YMVPAGYGIMVHQYGIAVLQMLTTVGSALFHLSRETKFFNLDNVFATSLLNTTLWGFYLGVKHA---GIWWYVATIGLAGPSAIYFIVRCGMPGLVCQHPSGRGLCRKSNPKYTIFHMLWHLASGSITLVTIHFFAANFPGTEAGGGWFRDFHGLPVVPTVSLAASALINFIGNYVGIMPLD 1011
A +G AR + L+ LPYL R+S Y +D G C++ D R V D+ VW+S V + PA Y + Q+ + LQ+ + S L+HLSRET FFN+DNVF SL T ++ VK A G+ WYV L P A + +V C PG+V + G R ++ +Y +H +WH ASG +TL+ +F P +E G G F V S+ S +N +GN G+MP+D
Sbjct: 11 AAAAFSLGLVRTARVAAGATALLPLLPYLGRASVYREDPGGRGQGFCLLRPEDCWRSVGDVQVWSSWVCFGGPALYSFLSAQWSLGALQLGAAITSGLYHLSRETLFFNVDNVFGLSLGCTV----FVAVKLAWDRGVMWYVIVNVLVLPVAGFLLVYCDFPGVVVRQ--GEKARRLAHERYDFWHAVWHAASGVVTLLNTYFLVTYVPESECGAGMEPWFPYPSTVAFWSVLLSIGVNLVGNLAGVMPVD 255
BLAST of mRNA_A-nodosum_M_contig1012.9.1 vs. uniprot
Match: A0A7S3HNL6_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNL6_9STRA) HSP 1 Score: 101 bits (251), Expect = 4.670e-20 Identity = 79/234 (33.76%), Postives = 118/234 (50.43%), Query Frame = 1
Query: 352 ACLPYLFRSSKYCQDSSLGCVIEDGDRRRPVSDILVWTSLVYMVPAGYGIMVHQYGIAVLQMLTTVGSALFHLSRETKFFNLDNVFATSLLNTTLWGFYLGVKHAGIWWYVATIGLAGPSAIYFIVRCGMPG-----------LVCQHPSGRGLCRKSNPKYTIFHMLWHLASGSITLVTI---HFFAANFPGTEAGGGWFRDFHGLPVVPTVSLAASALINFIGNYVGIMPLD 1011
A PYL + SK+ + S +G V R +D L+ TS Y++ A + Q+ IA++ +T +GS+L+H RE +FFNLDN+FATSLL T ++ I++ + +GL P+A++ IV CGMP +VC +GR L Y H LWHLAS + + HF A + T+ D + +P ++L+ S N GN GIMPL+
Sbjct: 74 AFFPYLRKPSKH-RRSFVGSV------DRNWNDQLMTTSSSYLLSAVFAFSYGQFEIALICFITYIGSSLYHRHREMEFFNLDNIFATSLLFTCVYTLVSSYFTHEIYFIIGLMGL--PTAMFLIVYCGMPADIRFKDIPGLEVVCCVRTGREL-------YDTVHALWHLASSVGPCMAVWYFHFKANEYDKTDMSDLNKLDDQIISRLPYLALSLSIFANIAGNIDGIMPLE 291
BLAST of mRNA_A-nodosum_M_contig1012.9.1 vs. uniprot
Match: A0A7S3XR67_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XR67_HETAK) HSP 1 Score: 99.4 bits (246), Expect = 1.470e-19 Identity = 56/144 (38.89%), Postives = 82/144 (56.94%), Query Frame = 1
Query: 316 LARSSVTIGCLVACLPYLFRSSKYCQDSSLGCVIEDGDRRRPVSDILVWTSLVYMVPAGYGIMVHQYGIAVLQMLTTVGSALFHLSRETKFFNLDNVFATSLLNTTLWGFYLGVKHAGIWWYVATIGLAGPSAIYFIVRCGMPG 747
LA + L+ LPYL + S +D S+G + + D RP+SD LV+TSL+Y +P Y + + + +L + T+ GS +FHL+RET FFN DN+ A +L+ +GFYL + IW A GL P + + CGMPG
Sbjct: 90 LAELTAMCAVLLYILPYLLKPSILRRDKSIGVNLTEEDLWRPISDPLVYTSLLYALPGLYALYYNMPFLGILHLYTSFGSTMFHLTRETMFFNWDNIGAMALMLIACFGFYLSLGTDMIWTAAAITGL--PIGAFLLAYCGMPG 231 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1012.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1012.9.1 >prot_A-nodosum_M_contig1012.9.1 ID=prot_A-nodosum_M_contig1012.9.1|Name=mRNA_A-nodosum_M_contig1012.9.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=307bp MAASSQVDKKEADKPSQNGTATNADYDGNGKKLGAVVDARPLPRSDAAGLback to top mRNA from alignment at A-nodosum_M_contig1012:92960..96821+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1012.9.1 ID=mRNA_A-nodosum_M_contig1012.9.1|Name=mRNA_A-nodosum_M_contig1012.9.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3862bp|location=Sequence derived from alignment at A-nodosum_M_contig1012:92960..96821+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1012:92960..96821+ >mRNA_A-nodosum_M_contig1012.9.1 ID=mRNA_A-nodosum_M_contig1012.9.1|Name=mRNA_A-nodosum_M_contig1012.9.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=921bp|location=Sequence derived from alignment at A-nodosum_M_contig1012:92960..96821+ (Ascophyllum nodosum dioecious)back to top |