mRNA_A-nodosum_M_contig1012.9.1 (mRNA) Ascophyllum nodosum dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1012.9.1 vs. uniprot
Match: D7G2R4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2R4_ECTSI) HSP 1 Score: 362 bits (929), Expect = 2.610e-117 Identity = 192/345 (55.65%), Postives = 243/345 (70.43%), Query Frame = 1 Query: 1 SSFGGAGIVAAVAVASTALLLDYVGQRR-KLRMAASSQVDKKEADKPSQNGTATNADYDGNGKKLGAVVDARPLPRSDAAGLV-------RRACVLSACGLTAVGCHRIGATVLARSSVTIGCLVACLPYLFRSSKYCQDSSLGCVIEDGDRRRPVSDILVWTSLVYMVPAGYGIMVHQYGIAVLQMLTTVGSALFHLSRETKFFNLDNVFATSLLNTTLWGFYLGVKHAGIWWYVATIGLAGPSAIYFIVRCGMPGLVCQHPSGRGLCRKSNPKYTIFHMLWHLASGSITLVTIHFFAANFPGTEAGGGWFRDFHGLPVVPTVSLAASALINFIGNYVGIMPLD 1011
SSF G ++A + +++TAL++D+ R +L+ S ++ ++ N DG+G G A P S A+G +RACVL+ + A+ CHR+G+ LAR TIG LVACLP+L RSSKY +D LGC++E GD+RRP++D+LVWTS VY +P+ YG+ HQYGIA LQ++TT+GS LFHL+RETKFFNLDNVFATSLL+TT W YLGV H G+WWYV IGL GP AI+ IVRCGMPGLVC+HP+G GLCR+SNP+Y FHMLWHL+SG TL+TIHFF FP EAGGGWF F +PVVPTV+LA SALIN GN VG+MPL+
Sbjct: 35 SSFNGPTVLAILVISATALVVDFAKFRAAELKSTGRSDPAAAPQERGREHAQVPNG-LDGHGGDGGGGAVAPPERLSRASGSSAENRVHRKRACVLAWWIVGALICHRLGSMTLARVFATIGSLVACLPHLLRSSKYRRDRGLGCLLETGDKRRPLTDMLVWTSFVYCLPSVYGLYAHQYGIAGLQLMTTIGSTLFHLTRETKFFNLDNVFATSLLSTTAWSLYLGVTH-GVWWYVVVIGLGGPFAIFCIVRCGMPGLVCRHPAGSGLCRRSNPEYDFFHMLWHLSSGLGTLITIHFFEVYFPAEEAGGGWFYFFPDVPVVPTVALALSALINLYGNRVGVMPLE 377
BLAST of mRNA_A-nodosum_M_contig1012.9.1 vs. uniprot
Match: A0A835Z7G3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7G3_9STRA) HSP 1 Score: 230 bits (586), Expect = 7.400e-66 Identity = 120/225 (53.33%), Postives = 150/225 (66.67%), Query Frame = 1 Query: 337 IGCLVACLPYLFRSSKYCQDSSLGCVIEDGDRRRPVSDILVWTSLVYMVPAGYGIMVHQYGIAVLQMLTTVGSALFHLSRETKFFNLDNVFATSLLNTTLWGFYLGVKHAGIWWYVATIGLAGPSAIYFIVRCGMPGLVCQHPSGRGLCRK-SNPKYTIFHMLWHLASGSITLVTIHFFAANFPGTEAGGGWFRDFHGLPVVPTVSLAASALINFIGNYVGIMPL 1008
+GC ++ PYL RSS+Y +D L C + D RR + D LVWTSLVY VPA YG+ HQYG+A LQ TTVGS LFH +RET++FNLDNV A +LL TT W L + A +W + A + P A YF+V CGMPG+VC PSG G R+ SNP Y +HMLWHL SG T+ +IHFFA+ +P +AGGG F F +PVVP VSL SA +N GN+ G +PL
Sbjct: 191 LGCALS--PYLLRSSRYRRDPRLRCRLGRRDVRRRLRDPLVWTSLVYAVPALYGVAAHQYGVAALQAATTVGSTLFHRARETRYFNLDNVGALALLFTTAWSLALAAR-ARVWAHAAVVLAGTPLAGYFMVACGMPGVVCACPSGDGTLRRASNPLYDHYHMLWHLVSGFGTIASIHFFASRYPHLDAGGGHFEHFPDVPVVPFVSLLLSAAVNVYGNWAGALPL 412
BLAST of mRNA_A-nodosum_M_contig1012.9.1 vs. uniprot
Match: A0A7S2XVH3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVH3_9STRA) HSP 1 Score: 175 bits (444), Expect = 1.460e-46 Identity = 95/217 (43.78%), Postives = 132/217 (60.83%), Query Frame = 1 Query: 358 LPYLFRSSKYCQDSSLGCVIEDGDRRRPVSDILVWTSLVYMVPAGYGIMVHQYGIAVLQMLTTVGSALFHLSRETKFFNLDNVFATSLLNTTLWGFYLGVKHAGIWWYVATIGLAGPSAIYFIVRCGMPGLVCQHPSGRGLCRKSNPKYTIFHMLWHLASGSITLVTIHFFAANFPGTEAGGGWFRDFHGLPVVPTVSLAASALINFIGNYVGIMPL 1008
+PYL ++S D S G + ++RR +D LV+TSL YM Y V QYGIA+LQ+ T++GS L+HL+RET FFN DN+ ATSLL T +G YL + W +A G+ AI + +CGMPG VC+ G+ C P + H WH+AS T+++++FF NFP EAG GWF + LP+ PT+++ S + NFIGN G+MPL
Sbjct: 96 IPYLAKASPLRSDPSRGIKLSPKEKRRSFADPLVFTSLFYMFAGIYAFSVGQYGIALLQIYTSMGSTLYHLTRETMFFNCDNIGATSLLLLTAYGLYLSLGIDLGWTILAAAGIPLGGAI--LHKCGMPGEVCK---GKRTCCSEYPSW---HSAWHVASSFGTVISVYFFEKNFPDHEAGAGWFAEMPFLPIAPTIAVVISVVQNFIGNKAGVMPL 304
BLAST of mRNA_A-nodosum_M_contig1012.9.1 vs. uniprot
Match: A0A7S1XWR7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XWR7_9STRA) HSP 1 Score: 129 bits (325), Expect = 2.190e-30 Identity = 89/251 (35.46%), Postives = 127/251 (50.60%), Query Frame = 1 Query: 283 AVGCHRIGATVLARSSVTIGCLVACLPYLFRSSKYCQD-SSLG---CVIEDGDRRRPVSDILVWTSLV-YMVPAGYGIMVHQYGIAVLQMLTTVGSALFHLSRETKFFNLDNVFATSLLNTTLWGFYLGVKHA---GIWWYVATIGLAGPSAIYFIVRCGMPGLVCQHPSGRGLCRKSNPKYTIFHMLWHLASGSITLVTIHFFAANFPGTEAGGGWFRDFHGLPVVPTVSLAASALINFIGNYVGIMPLD 1011
A +G AR + L+ LPYL R+S Y +D G C++ D R V D+ VW+S V + PA Y + Q+ + LQ+ + S L+HLSRET FFN+DNVF SL T ++ VK A G+ WYV L P A + +V C PG+V + G R ++ +Y +H +WH ASG +TL+ +F P +E G G F V S+ S +N +GN G+MP+D
Sbjct: 11 AAAAFSLGLVRTARVAAGATALLPLLPYLGRASVYREDPGGRGQGFCLLRPEDCWRSVGDVQVWSSWVCFGGPALYSFLSAQWSLGALQLGAAITSGLYHLSRETLFFNVDNVFGLSLGCTV----FVAVKLAWDRGVMWYVIVNVLVLPVAGFLLVYCDFPGVVVRQ--GEKARRLAHERYDFWHAVWHAASGVVTLLNTYFLVTYVPESECGAGMEPWFPYPSTVAFWSVLLSIGVNLVGNLAGVMPVD 255
BLAST of mRNA_A-nodosum_M_contig1012.9.1 vs. uniprot
Match: A0A7S3HNL6_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNL6_9STRA) HSP 1 Score: 101 bits (251), Expect = 4.670e-20 Identity = 79/234 (33.76%), Postives = 118/234 (50.43%), Query Frame = 1 Query: 352 ACLPYLFRSSKYCQDSSLGCVIEDGDRRRPVSDILVWTSLVYMVPAGYGIMVHQYGIAVLQMLTTVGSALFHLSRETKFFNLDNVFATSLLNTTLWGFYLGVKHAGIWWYVATIGLAGPSAIYFIVRCGMPG-----------LVCQHPSGRGLCRKSNPKYTIFHMLWHLASGSITLVTI---HFFAANFPGTEAGGGWFRDFHGLPVVPTVSLAASALINFIGNYVGIMPLD 1011
A PYL + SK+ + S +G V R +D L+ TS Y++ A + Q+ IA++ +T +GS+L+H RE +FFNLDN+FATSLL T ++ I++ + +GL P+A++ IV CGMP +VC +GR L Y H LWHLAS + + HF A + T+ D + +P ++L+ S N GN GIMPL+
Sbjct: 74 AFFPYLRKPSKH-RRSFVGSV------DRNWNDQLMTTSSSYLLSAVFAFSYGQFEIALICFITYIGSSLYHRHREMEFFNLDNIFATSLLFTCVYTLVSSYFTHEIYFIIGLMGL--PTAMFLIVYCGMPADIRFKDIPGLEVVCCVRTGREL-------YDTVHALWHLASSVGPCMAVWYFHFKANEYDKTDMSDLNKLDDQIISRLPYLALSLSIFANIAGNIDGIMPLE 291
BLAST of mRNA_A-nodosum_M_contig1012.9.1 vs. uniprot
Match: A0A7S3XR67_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XR67_HETAK) HSP 1 Score: 99.4 bits (246), Expect = 1.470e-19 Identity = 56/144 (38.89%), Postives = 82/144 (56.94%), Query Frame = 1 Query: 316 LARSSVTIGCLVACLPYLFRSSKYCQDSSLGCVIEDGDRRRPVSDILVWTSLVYMVPAGYGIMVHQYGIAVLQMLTTVGSALFHLSRETKFFNLDNVFATSLLNTTLWGFYLGVKHAGIWWYVATIGLAGPSAIYFIVRCGMPG 747
LA + L+ LPYL + S +D S+G + + D RP+SD LV+TSL+Y +P Y + + + +L + T+ GS +FHL+RET FFN DN+ A +L+ +GFYL + IW A GL P + + CGMPG
Sbjct: 90 LAELTAMCAVLLYILPYLLKPSILRRDKSIGVNLTEEDLWRPISDPLVYTSLLYALPGLYALYYNMPFLGILHLYTSFGSTMFHLTRETMFFNWDNIGAMALMLIACFGFYLSLGTDMIWTAAAITGL--PIGAFLLAYCGMPG 231 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1012.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1012.9.1 >prot_A-nodosum_M_contig1012.9.1 ID=prot_A-nodosum_M_contig1012.9.1|Name=mRNA_A-nodosum_M_contig1012.9.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=307bp MAASSQVDKKEADKPSQNGTATNADYDGNGKKLGAVVDARPLPRSDAAGLback to top mRNA from alignment at A-nodosum_M_contig1012:92960..96821+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1012.9.1 ID=mRNA_A-nodosum_M_contig1012.9.1|Name=mRNA_A-nodosum_M_contig1012.9.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3862bp|location=Sequence derived from alignment at A-nodosum_M_contig1012:92960..96821+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1012:92960..96821+ >mRNA_A-nodosum_M_contig1012.9.1 ID=mRNA_A-nodosum_M_contig1012.9.1|Name=mRNA_A-nodosum_M_contig1012.9.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=921bp|location=Sequence derived from alignment at A-nodosum_M_contig1012:92960..96821+ (Ascophyllum nodosum dioecious)back to top |