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Homology
BLAST of mRNA_A-nodosum_M_contig1011.3.1 vs. uniprot
Match: D7FMG5_ECTSI (Transient receptor potential channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMG5_ECTSI) HSP 1 Score: 48.9 bits (115), Expect = 5.690e-5 Identity = 27/65 (41.54%), Postives = 43/65 (66.15%), Query Frame = 3 Query: 9 QGAMIQVMILMVSKVLQFAIVMVIIMMGFAVSFWASSERSRDVNEDQSVAFELMWVAIFKAMLGD 203
QG +IQ+M ++ ++LQFA+V+ IMMGF VSF+A E ++ + +W+ +FKAMLG+
Sbjct: 608 QGLVIQMMTILFGEMLQFALVLGTIMMGFTVSFYALFEEAKSYGD--------VWLDVFKAMLGE 664
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1011.3.1 vs. uniprot
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
| Match Name | E-value | Identity | Description | |
|---|
| D7FMG5_ECTSI | 5.690e-5 | 41.54 | Transient receptor potential channel n=1 Tax=Ectoc... | [more] |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 0 |
| Start | 1 |
| Model size | 207 |
| Hectar predicted targeting category | signal anchor |
| Exons | 2 |
| Cds size | 189 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680866369.9767802-UTR-A-nodosum_M_contig1011:38324..38341 | 1680866369.9767802-UTR-A-nodosum_M_contig1011:38324..38341 | Ascophyllum nodosum dioecious | UTR | A-nodosum_M_contig1011 38325..38341 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680866369.987891-CDS-A-nodosum_M_contig1011:38341..38350 | 1680866369.987891-CDS-A-nodosum_M_contig1011:38341..38350 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig1011 38342..38350 + |
| 1680866369.9974124-CDS-A-nodosum_M_contig1011:38622..38802 | 1680866369.9974124-CDS-A-nodosum_M_contig1011:38622..38802 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig1011 38623..38802 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1011.3.1 >prot_A-nodosum_M_contig1011.3.1 ID=prot_A-nodosum_M_contig1011.3.1|Name=mRNA_A-nodosum_M_contig1011.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=63bp
MIQVMILMVSKVLQFAIVMVIIMMGFAVSFWASSERSRDVNEDQSVAFEL
MWVAIFKAMLGDF back to topmRNA from alignment at A-nodosum_M_contig1011:38325..38802+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_A-nodosum_M_contig1011.3.1 ID=mRNA_A-nodosum_M_contig1011.3.1|Name=mRNA_A-nodosum_M_contig1011.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=478bp|location=Sequence derived from alignment at A-nodosum_M_contig1011:38325..38802+ (Ascophyllum nodosum dioecious)
ACCCTTCCCAGGGAGCTATGATACAGGTGAGACCAGTCCCGAAAGAAGTG
ACCTTGAAGCATTCGCCCATTCCTCATTTCATGCCGGGCCGGGCGTCGCC
GACGCGACCTTGAATCTTGAGAAATACCGTCTGTTGGAGATAGCCAGCAA
CTTGTGTCCACGTTGTCTTAGAGACCTTCTGCAGGGCGACGAAGCCATGA
AAAGAAACATTGACGCCTAAATCCTTTGTGCGAGATAACTCAGCGCTGCA
CAGATTCCCAATATTCTGACCTGTATTTGTGTGTACGCCACCGGCCAGGT
GATGATCCTCATGGTGAGCAAGGTGCTGCAATTCGCCATTGTGATGGTTA
TCATTATGATGGGATTCGCGGTGTCGTTTTGGGCCAGCAGTGAGCGCTCC
CGCGACGTCAACGAAGATCAGTCCGTGGCCTTTGAACTCATGTGGGTGGC
CATTTTCAAAGCCATGCTTGGGGACTTC back to topCoding sequence (CDS) from alignment at A-nodosum_M_contig1011:38325..38802+ >mRNA_A-nodosum_M_contig1011.3.1 ID=mRNA_A-nodosum_M_contig1011.3.1|Name=mRNA_A-nodosum_M_contig1011.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=189bp|location=Sequence derived from alignment at A-nodosum_M_contig1011:38325..38802+ (Ascophyllum nodosum dioecious)
ATGATACAGGTGATGATCCTCATGGTGAGCAAGGTGCTGCAATTCGCCAT
TGTGATGGTTATCATTATGATGGGATTCGCGGTGTCGTTTTGGGCCAGCA
GTGAGCGCTCCCGCGACGTCAACGAAGATCAGTCCGTGGCCTTTGAACTC
ATGTGGGTGGCCATTTTCAAAGCCATGCTTGGGGACTTC back to top
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