mRNA_A-nodosum_M_contig1011.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1011.3.1
Unique NamemRNA_A-nodosum_M_contig1011.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1011.3.1 vs. uniprot
Match: D7FMG5_ECTSI (Transient receptor potential channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMG5_ECTSI)

HSP 1 Score: 48.9 bits (115), Expect = 5.690e-5
Identity = 27/65 (41.54%), Postives = 43/65 (66.15%), Query Frame = 3 
Query:    9 QGAMIQVMILMVSKVLQFAIVMVIIMMGFAVSFWASSERSRDVNEDQSVAFELMWVAIFKAMLGD 203
            QG +IQ+M ++  ++LQFA+V+  IMMGF VSF+A  E ++   +        +W+ +FKAMLG+
Sbjct:  608 QGLVIQMMTILFGEMLQFALVLGTIMMGFTVSFYALFEEAKSYGD--------VWLDVFKAMLGE 664
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1011.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMG5_ECTSI5.690e-541.54Transient receptor potential channel n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1011contigA-nodosum_M_contig1011:38325..38802 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size207
Hectar predicted targeting categorysignal anchor
Exons2
Cds size189
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866369.9767802-UTR-A-nodosum_M_contig1011:38324..383411680866369.9767802-UTR-A-nodosum_M_contig1011:38324..38341Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1011 38325..38341 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866369.987891-CDS-A-nodosum_M_contig1011:38341..383501680866369.987891-CDS-A-nodosum_M_contig1011:38341..38350Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1011 38342..38350 +
1680866369.9974124-CDS-A-nodosum_M_contig1011:38622..388021680866369.9974124-CDS-A-nodosum_M_contig1011:38622..38802Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1011 38623..38802 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1011.3.1prot_A-nodosum_M_contig1011.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1011 38342..38802 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1011.3.1

>prot_A-nodosum_M_contig1011.3.1 ID=prot_A-nodosum_M_contig1011.3.1|Name=mRNA_A-nodosum_M_contig1011.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=63bp
MIQVMILMVSKVLQFAIVMVIIMMGFAVSFWASSERSRDVNEDQSVAFEL
MWVAIFKAMLGDF
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mRNA from alignment at A-nodosum_M_contig1011:38325..38802+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1011.3.1 ID=mRNA_A-nodosum_M_contig1011.3.1|Name=mRNA_A-nodosum_M_contig1011.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=478bp|location=Sequence derived from alignment at A-nodosum_M_contig1011:38325..38802+ (Ascophyllum nodosum dioecious)
ACCCTTCCCAGGGAGCTATGATACAGGTGAGACCAGTCCCGAAAGAAGTG
ACCTTGAAGCATTCGCCCATTCCTCATTTCATGCCGGGCCGGGCGTCGCC
GACGCGACCTTGAATCTTGAGAAATACCGTCTGTTGGAGATAGCCAGCAA
CTTGTGTCCACGTTGTCTTAGAGACCTTCTGCAGGGCGACGAAGCCATGA
AAAGAAACATTGACGCCTAAATCCTTTGTGCGAGATAACTCAGCGCTGCA
CAGATTCCCAATATTCTGACCTGTATTTGTGTGTACGCCACCGGCCAGGT
GATGATCCTCATGGTGAGCAAGGTGCTGCAATTCGCCATTGTGATGGTTA
TCATTATGATGGGATTCGCGGTGTCGTTTTGGGCCAGCAGTGAGCGCTCC
CGCGACGTCAACGAAGATCAGTCCGTGGCCTTTGAACTCATGTGGGTGGC
CATTTTCAAAGCCATGCTTGGGGACTTC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1011:38325..38802+

>mRNA_A-nodosum_M_contig1011.3.1 ID=mRNA_A-nodosum_M_contig1011.3.1|Name=mRNA_A-nodosum_M_contig1011.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=189bp|location=Sequence derived from alignment at A-nodosum_M_contig1011:38325..38802+ (Ascophyllum nodosum dioecious)
ATGATACAGGTGATGATCCTCATGGTGAGCAAGGTGCTGCAATTCGCCAT
TGTGATGGTTATCATTATGATGGGATTCGCGGTGTCGTTTTGGGCCAGCA
GTGAGCGCTCCCGCGACGTCAACGAAGATCAGTCCGTGGCCTTTGAACTC
ATGTGGGTGGCCATTTTCAAAGCCATGCTTGGGGACTTC
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