mRNA_A-nodosum_M_contig10108.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_A-nodosum_M_contig10108.1.1 vs. uniprot
Match: A0A151TGU0_CAJCA (Copia protein (Fragment) n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151TGU0_CAJCA)

HSP 1 Score: 47.4 bits (111), Expect = 4.450e-6
Identity = 21/34 (61.76%), Postives = 25/34 (73.53%), Query Frame = 1

Query:    1 KWVFAWKTGSDGYITKAKARLVARGFGQQLGVDY 102
            KW+F  K  SDG + K KARLVARGF QQ G+D+
Sbjct:   33 KWLFKLKLNSDGTVAKYKARLVARGFTQQYGLDF 66

[Close]

BLAST of mRNA_A-nodosum_M_contig10108.1.1 vs. uniprot
Match: A0A151SM08_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SM08_CAJCA)

HSP 1 Score: 49.3 bits (116), Expect = 9.140e-6
Identity = 23/34 (67.65%), Postives = 26/34 (76.47%), Query Frame = 1

Query:    1 KWVFAWKTGSDGYITKAKARLVARGFGQQLGVDY 102
            KWVF  KT SDG I + KARLVARGF Q+ G+DY
Sbjct:  710 KWVFKVKTYSDGSIERYKARLVARGFTQEYGIDY 743

[Close]

BLAST of mRNA_A-nodosum_M_contig10108.1.1 vs. uniprot
Match: A0A5N6MMS5_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6MMS5_9ASTR)

HSP 1 Score: 49.3 bits (116), Expect = 9.140e-6
Identity = 23/34 (67.65%), Postives = 26/34 (76.47%), Query Frame = 1

Query:    1 KWVFAWKTGSDGYITKAKARLVARGFGQQLGVDY 102
            KWV+  K  SDG I + KARLVARGF QQLG+DY
Sbjct:  594 KWVYKLKFKSDGSIDRYKARLVARGFNQQLGLDY 627

[Close]

BLAST of mRNA_A-nodosum_M_contig10108.1.1 vs. uniprot
Match: A0A151UDQ7_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151UDQ7_CAJCA)

HSP 1 Score: 49.3 bits (116), Expect = 9.230e-6
Identity = 23/34 (67.65%), Postives = 26/34 (76.47%), Query Frame = 1

Query:    1 KWVFAWKTGSDGYITKAKARLVARGFGQQLGVDY 102
            KWVF  KT SDG I + KARLVARGF Q+ G+DY
Sbjct:   29 KWVFKVKTYSDGSIERYKARLVARGFTQEYGIDY 62

[Close]

BLAST of mRNA_A-nodosum_M_contig10108.1.1 vs. uniprot
Match: A0A5B7BX31_DAVIN (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7BX31_DAVIN)

HSP 1 Score: 48.1 bits (113), Expect = 9.580e-6
Identity = 21/34 (61.76%), Postives = 26/34 (76.47%), Query Frame = 1

Query:    1 KWVFAWKTGSDGYITKAKARLVARGFGQQLGVDY 102
            KW++  KT SDG I + KARLVARGF Q+ G+DY
Sbjct:   45 KWIYKIKTRSDGSIERYKARLVARGFTQEYGIDY 78

[Close]

BLAST of mRNA_A-nodosum_M_contig10108.1.1 vs. uniprot
Match: A0A1R3K8M3_COCAP (Integrase, catalytic core n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3K8M3_COCAP)

HSP 1 Score: 48.9 bits (115), Expect = 1.250e-5
Identity = 23/34 (67.65%), Postives = 25/34 (73.53%), Query Frame = 1

Query:    1 KWVFAWKTGSDGYITKAKARLVARGFGQQLGVDY 102
            KWV+  KT  DG I + KARLVARGF QQ GVDY
Sbjct:  901 KWVYKVKTRPDGAIERYKARLVARGFSQQYGVDY 934

[Close]

BLAST of mRNA_A-nodosum_M_contig10108.1.1 vs. uniprot
Match: A0A2P6P7L4_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6P7L4_ROSCH)

HSP 1 Score: 48.9 bits (115), Expect = 1.260e-5
Identity = 21/34 (61.76%), Postives = 26/34 (76.47%), Query Frame = 1

Query:    1 KWVFAWKTGSDGYITKAKARLVARGFGQQLGVDY 102
            KW+F  K  SDG I++ KARLVARGF Q+ G+DY
Sbjct:   72 KWIFKVKKNSDGSISRQKARLVARGFSQEEGIDY 105

[Close]

BLAST of mRNA_A-nodosum_M_contig10108.1.1 vs. uniprot
Match: A0A2N9GF65_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GF65_FAGSY)

HSP 1 Score: 48.9 bits (115), Expect = 1.260e-5
Identity = 20/34 (58.82%), Postives = 27/34 (79.41%), Query Frame = 1

Query:    1 KWVFAWKTGSDGYITKAKARLVARGFGQQLGVDY 102
            KWV+  KT +DG++ + KARLVARGF Q+ G+DY
Sbjct:   92 KWVYKIKTRADGFVERYKARLVARGFTQEYGIDY 125

[Close]

BLAST of mRNA_A-nodosum_M_contig10108.1.1 vs. uniprot
Match: UPI000901C7C2 (uncharacterized protein LOC109126311 n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI000901C7C2)

HSP 1 Score: 48.9 bits (115), Expect = 1.270e-5
Identity = 22/34 (64.71%), Postives = 24/34 (70.59%), Query Frame = 1

Query:    1 KWVFAWKTGSDGYITKAKARLVARGFGQQLGVDY 102
            KW+F  K   DG I + KARLVARGF QQ GVDY
Sbjct:   42 KWIFTLKYNPDGSIARYKARLVARGFNQQYGVDY 75

[Close]

BLAST of mRNA_A-nodosum_M_contig10108.1.1 vs. uniprot
Match: A0A2N9ETQ8_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9ETQ8_FAGSY)

HSP 1 Score: 48.5 bits (114), Expect = 1.710e-5
Identity = 22/34 (64.71%), Postives = 26/34 (76.47%), Query Frame = 1

Query:    1 KWVFAWKTGSDGYITKAKARLVARGFGQQLGVDY 102
            KWV+  KT +DG I + KARLVARGF QQ G+DY
Sbjct: 1249 KWVYKVKTRADGSIERYKARLVARGFSQQYGLDY 1282

The following BLAST results are available for this feature:

BLAST of mRNA_A-nodosum_M_contig10108.1.1 vs. uniprot

BLAST of mRNA_A-nodosum_M_contig10108.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25

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POSITION

0


Match Name	E-value	Identity	Description
A0A151TGU0_CAJCA	4.450e-6	61.76	Copia protein (Fragment) n=1 Tax=Cajanus cajan Tax...	[more]
A0A151SM08_CAJCA	9.140e-6	67.65	Retrovirus-related Pol polyprotein from transposon...	[more]
A0A5N6MMS5_9ASTR	9.140e-6	67.65	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A151UDQ7_CAJCA	9.230e-6	67.65	Retrovirus-related Pol polyprotein from transposon...	[more]
A0A5B7BX31_DAVIN	9.580e-6	61.76	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A1R3K8M3_COCAP	1.250e-5	67.65	Integrase, catalytic core n=1 Tax=Corchorus capsul...	[more]
A0A2P6P7L4_ROSCH	1.260e-5	61.76	Putative RNA-directed DNA polymerase n=1 Tax=Rosa ...	[more]
A0A2N9GF65_FAGSY	1.260e-5	58.82	Uncharacterized protein n=1 Tax=Fagus sylvatica Ta...	[more]
UPI000901C7C2	1.270e-5	64.71	uncharacterized protein LOC109126311 n=1 Tax=Camel...	[more]
A0A2N9ETQ8_FAGSY	1.710e-5	64.71	Uncharacterized protein n=1 Tax=Fagus sylvatica Ta...	[more]

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Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at A-nodosum_M_contig10108:8056..8157+
coding sequence from alignment at A-nodosum_M_contig10108:8056..8157+

protein sequence of mRNA_A-nodosum_M_contig10108.1.1

>prot_A-nodosum_M_contig10108.1.1 ID=prot_A-nodosum_M_contig10108.1.1|Name=mRNA_A-nodosum_M_contig10108.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=34bp
KWVFAWKTGSDGYITKAKARLVARGFGQQLGVDY

mRNA from alignment at A-nodosum_M_contig10108:8056..8157+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_A-nodosum_M_contig10108.1.1 ID=mRNA_A-nodosum_M_contig10108.1.1|Name=mRNA_A-nodosum_M_contig10108.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=102bp|location=Sequence derived from alignment at A-nodosum_M_contig10108:8056..8157+ (Ascophyllum nodosum dioecious)
AAATGGGTGTTTGCTTGGAAGACTGGTTCTGACGGTTATATCACGAAGGC
TAAGGCGAGGTTGGTAGCACGTGGTTTTGGACAGCAGCTTGGCGTGGACT
AT

Coding sequence (CDS) from alignment at A-nodosum_M_contig10108:8056..8157+

>mRNA_A-nodosum_M_contig10108.1.1 ID=mRNA_A-nodosum_M_contig10108.1.1|Name=mRNA_A-nodosum_M_contig10108.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=102bp|location=Sequence derived from alignment at A-nodosum_M_contig10108:8056..8157+ (Ascophyllum nodosum dioecious)
AAATGGGTGTTTGCTTGGAAGACTGGTTCTGACGGTTATATCACGAAGGC
TAAGGCGAGGTTGGTAGCACGTGGTTTTGGACAGCAGCTTGGCGTGGACT
AT