mRNA_A-nodosum_M_contig10108.1.1 (mRNA) Ascophyllum nodosum dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig10108.1.1 vs. uniprot
Match: A0A151TGU0_CAJCA (Copia protein (Fragment) n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151TGU0_CAJCA) HSP 1 Score: 47.4 bits (111), Expect = 4.450e-6 Identity = 21/34 (61.76%), Postives = 25/34 (73.53%), Query Frame = 1 Query: 1 KWVFAWKTGSDGYITKAKARLVARGFGQQLGVDY 102
KW+F K SDG + K KARLVARGF QQ G+D+
Sbjct: 33 KWLFKLKLNSDGTVAKYKARLVARGFTQQYGLDF 66
BLAST of mRNA_A-nodosum_M_contig10108.1.1 vs. uniprot
Match: A0A151SM08_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SM08_CAJCA) HSP 1 Score: 49.3 bits (116), Expect = 9.140e-6 Identity = 23/34 (67.65%), Postives = 26/34 (76.47%), Query Frame = 1 Query: 1 KWVFAWKTGSDGYITKAKARLVARGFGQQLGVDY 102
KWVF KT SDG I + KARLVARGF Q+ G+DY
Sbjct: 710 KWVFKVKTYSDGSIERYKARLVARGFTQEYGIDY 743
BLAST of mRNA_A-nodosum_M_contig10108.1.1 vs. uniprot
Match: A0A5N6MMS5_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6MMS5_9ASTR) HSP 1 Score: 49.3 bits (116), Expect = 9.140e-6 Identity = 23/34 (67.65%), Postives = 26/34 (76.47%), Query Frame = 1 Query: 1 KWVFAWKTGSDGYITKAKARLVARGFGQQLGVDY 102
KWV+ K SDG I + KARLVARGF QQLG+DY
Sbjct: 594 KWVYKLKFKSDGSIDRYKARLVARGFNQQLGLDY 627
BLAST of mRNA_A-nodosum_M_contig10108.1.1 vs. uniprot
Match: A0A151UDQ7_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151UDQ7_CAJCA) HSP 1 Score: 49.3 bits (116), Expect = 9.230e-6 Identity = 23/34 (67.65%), Postives = 26/34 (76.47%), Query Frame = 1 Query: 1 KWVFAWKTGSDGYITKAKARLVARGFGQQLGVDY 102
KWVF KT SDG I + KARLVARGF Q+ G+DY
Sbjct: 29 KWVFKVKTYSDGSIERYKARLVARGFTQEYGIDY 62
BLAST of mRNA_A-nodosum_M_contig10108.1.1 vs. uniprot
Match: A0A5B7BX31_DAVIN (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7BX31_DAVIN) HSP 1 Score: 48.1 bits (113), Expect = 9.580e-6 Identity = 21/34 (61.76%), Postives = 26/34 (76.47%), Query Frame = 1 Query: 1 KWVFAWKTGSDGYITKAKARLVARGFGQQLGVDY 102
KW++ KT SDG I + KARLVARGF Q+ G+DY
Sbjct: 45 KWIYKIKTRSDGSIERYKARLVARGFTQEYGIDY 78
BLAST of mRNA_A-nodosum_M_contig10108.1.1 vs. uniprot
Match: A0A1R3K8M3_COCAP (Integrase, catalytic core n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3K8M3_COCAP) HSP 1 Score: 48.9 bits (115), Expect = 1.250e-5 Identity = 23/34 (67.65%), Postives = 25/34 (73.53%), Query Frame = 1 Query: 1 KWVFAWKTGSDGYITKAKARLVARGFGQQLGVDY 102
KWV+ KT DG I + KARLVARGF QQ GVDY
Sbjct: 901 KWVYKVKTRPDGAIERYKARLVARGFSQQYGVDY 934
BLAST of mRNA_A-nodosum_M_contig10108.1.1 vs. uniprot
Match: A0A2P6P7L4_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6P7L4_ROSCH) HSP 1 Score: 48.9 bits (115), Expect = 1.260e-5 Identity = 21/34 (61.76%), Postives = 26/34 (76.47%), Query Frame = 1 Query: 1 KWVFAWKTGSDGYITKAKARLVARGFGQQLGVDY 102
KW+F K SDG I++ KARLVARGF Q+ G+DY
Sbjct: 72 KWIFKVKKNSDGSISRQKARLVARGFSQEEGIDY 105
BLAST of mRNA_A-nodosum_M_contig10108.1.1 vs. uniprot
Match: A0A2N9GF65_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GF65_FAGSY) HSP 1 Score: 48.9 bits (115), Expect = 1.260e-5 Identity = 20/34 (58.82%), Postives = 27/34 (79.41%), Query Frame = 1 Query: 1 KWVFAWKTGSDGYITKAKARLVARGFGQQLGVDY 102
KWV+ KT +DG++ + KARLVARGF Q+ G+DY
Sbjct: 92 KWVYKIKTRADGFVERYKARLVARGFTQEYGIDY 125
BLAST of mRNA_A-nodosum_M_contig10108.1.1 vs. uniprot
Match: UPI000901C7C2 (uncharacterized protein LOC109126311 n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI000901C7C2) HSP 1 Score: 48.9 bits (115), Expect = 1.270e-5 Identity = 22/34 (64.71%), Postives = 24/34 (70.59%), Query Frame = 1 Query: 1 KWVFAWKTGSDGYITKAKARLVARGFGQQLGVDY 102
KW+F K DG I + KARLVARGF QQ GVDY
Sbjct: 42 KWIFTLKYNPDGSIARYKARLVARGFNQQYGVDY 75
BLAST of mRNA_A-nodosum_M_contig10108.1.1 vs. uniprot
Match: A0A2N9ETQ8_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9ETQ8_FAGSY) HSP 1 Score: 48.5 bits (114), Expect = 1.710e-5 Identity = 22/34 (64.71%), Postives = 26/34 (76.47%), Query Frame = 1 Query: 1 KWVFAWKTGSDGYITKAKARLVARGFGQQLGVDY 102
KWV+ KT +DG I + KARLVARGF QQ G+DY
Sbjct: 1249 KWVYKVKTRADGSIERYKARLVARGFSQQYGLDY 1282 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10108.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig10108.1.1 >prot_A-nodosum_M_contig10108.1.1 ID=prot_A-nodosum_M_contig10108.1.1|Name=mRNA_A-nodosum_M_contig10108.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=34bp KWVFAWKTGSDGYITKAKARLVARGFGQQLGVDYback to top mRNA from alignment at A-nodosum_M_contig10108:8056..8157+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig10108.1.1 ID=mRNA_A-nodosum_M_contig10108.1.1|Name=mRNA_A-nodosum_M_contig10108.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=102bp|location=Sequence derived from alignment at A-nodosum_M_contig10108:8056..8157+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig10108:8056..8157+ >mRNA_A-nodosum_M_contig10108.1.1 ID=mRNA_A-nodosum_M_contig10108.1.1|Name=mRNA_A-nodosum_M_contig10108.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=102bp|location=Sequence derived from alignment at A-nodosum_M_contig10108:8056..8157+ (Ascophyllum nodosum dioecious)back to top |