mRNA_A-nodosum_M_contig101.43.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig101.43.1
Unique NamemRNA_A-nodosum_M_contig101.43.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig101.43.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig101contigA-nodosum_M_contig101:753749..754409 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog159749.K0QZI6
PFAMsDDE_Tnp_4
Model size219
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.47e-05
EggNOG OGs2E3PU@1|root,2SAQU@2759|Eukaryota
DescriptionDDE superfamily endonuclease
Cds size216
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866368.963857-CDS-A-nodosum_M_contig101:753749..7538091680866368.963857-CDS-A-nodosum_M_contig101:753749..753809Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig101 753750..753809 -
1680866368.9762626-CDS-A-nodosum_M_contig101:754253..7544091680866368.9762626-CDS-A-nodosum_M_contig101:754253..754409Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig101 754254..754409 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig101.43.1prot_A-nodosum_M_contig101.43.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig101 753750..754409 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig101.43.1

>prot_A-nodosum_M_contig101.43.1 ID=prot_A-nodosum_M_contig101.43.1|Name=mRNA_A-nodosum_M_contig101.43.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=72bp
YLDLVDIHGVSTSTAYLCMWCVIDAINNTTGVGDMCFPQDSEACRQLAAG
FTARSGARGCLDGVVGAVDGLF
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mRNA from alignment at A-nodosum_M_contig101:753749..754409-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig101.43.1 ID=mRNA_A-nodosum_M_contig101.43.1|Name=mRNA_A-nodosum_M_contig101.43.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=661bp|location=Sequence derived from alignment at A-nodosum_M_contig101:753749..754409- (Ascophyllum nodosum dioecious)
TACTTGGATTTAGTGGATATTCACGGTGTCAGCACATCAACTGCGTACTT
GTGCATGTGGTGCGTCATTGACGCCATCAACAACACAACAGGCGTCGGCG
ACATGTGCTTCCCGCAGGACTCAGAGGCTTGCCGGCAGCTGGCGGCGGGG
TTCACGGTAAGACAGTGTGTTTGTTTTTGTACGTCGTAGTTTTAAGTCCA
GGCAACGGTCGAAGGGGAGGCGTTGGGTGATGTTCGCAGTGCTGTATTTC
GGCCTCGATCGGATGTTGCTTCCTCGTTGAGGGCACAGTATAATATTTTG
ATTCAAACAGCCATTACAAGCAAACACTTGTGGAGGGAAACCTAGTTTCC
CGGACTTATTTGCCAGTGCGGTTCTGACGGGGTTTTTTCGGCTTATCTCG
GTGTGCTGCTCGGGACCTACCGCATGCTTTCGTACAAAGTACGTTTTTTC
ATGCTACTTGATCGGTCAAATGACTTGTACATCGCTCAAGAAACGATTCC
CAGGGAATGCTTTTCGCAAGTGGACAGGTATATTCGTGAGAGTTCCGAAC
AACCCGAATGTTTTAACTCAAGACGAGTATTTTTTGTTGGCGTCGAGCAG
GCAAGGAGCGGTGCTCGGGGTTGCCTCGATGGCGTCGTCGGAGCTGTTGA
CGGGCTCTTCG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig101:753749..754409-

>mRNA_A-nodosum_M_contig101.43.1 ID=mRNA_A-nodosum_M_contig101.43.1|Name=mRNA_A-nodosum_M_contig101.43.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=216bp|location=Sequence derived from alignment at A-nodosum_M_contig101:753749..754409- (Ascophyllum nodosum dioecious)
TACTTGGATTTAGTGGATATTCACGGTGTCAGCACATCAACTGCGTACTT
GTGCATGTGGTGCGTCATTGACGCCATCAACAACACAACAGGCGTCGGCG
ACATGTGCTTCCCGCAGGACTCAGAGGCTTGCCGGCAGCTGGCGGCGGGG
TTCACGGCAAGGAGCGGTGCTCGGGGTTGCCTCGATGGCGTCGTCGGAGC
TGTTGACGGGCTCTTC
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