mRNA_A-nodosum_M_contig10093.1.1 (mRNA) Ascophyllum nodosum dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig10093.1.1 vs. uniprot
Match: A0A6H5JUW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUW6_9PHAE) HSP 1 Score: 91.3 bits (225), Expect = 1.480e-20 Identity = 44/108 (40.74%), Postives = 70/108 (64.81%), Query Frame = 1 Query: 1 GGPISWFSRAQRVTASASSESEYVALAEIVNETKFLRQVQGLIISTLRSCTISIMEDN*GAIKMANNKHSSRRTRHIDVKHHIVRDAVEEGLVRIVYVRSEEQHADMI 324
GG +SWFSR Q+ +++E+EYVAL ++V E FLRQ+ ++ + I + EDN GAI++A N S+ ++HIDV+HH +R+ VE + +++V S Q AD +
Sbjct: 84 GGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFL 191
BLAST of mRNA_A-nodosum_M_contig10093.1.1 vs. uniprot
Match: A0A6H5JTK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK6_9PHAE) HSP 1 Score: 92.8 bits (229), Expect = 1.550e-20 Identity = 45/108 (41.67%), Postives = 71/108 (65.74%), Query Frame = 1 Query: 1 GGPISWFSRAQRVTASASSESEYVALAEIVNETKFLRQVQGLIISTLRSCTISIMEDN*GAIKMANNKHSSRRTRHIDVKHHIVRDAVEEGLVRIVYVRSEEQHADMI 324
GG +SWFSR Q+ +++E+EYV+LA+++ E FLRQV+ ++ I ++EDN GAI++A N S+ ++HIDV+HH +R+ V + I +V S QHAD +
Sbjct: 127 GGCMSWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVRRFVLPEAGMPCIPVLEDNQGAIQLAQNPISNSTSKHIDVRHHFIRELVRRKEISIFHVESAYQHADFL 234
BLAST of mRNA_A-nodosum_M_contig10093.1.1 vs. uniprot
Match: A0A6H5KJP2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJP2_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 1.550e-20 Identity = 46/108 (42.59%), Postives = 72/108 (66.67%), Query Frame = 1 Query: 1 GGPISWFSRAQRVTASASSESEYVALAEIVNETKFLRQVQGLIISTLRSCTISIMEDN*GAIKMANNKHSSRRTRHIDVKHHIVRDAVEEGLVRIVYVRSEEQHADMI 324
GG ++WFSR Q+ +++E EYVA+A+++ E FLRQV L++ I + EDN GAI++A+N ++ ++HIDV+HH +R+ VE + I +V SE QHAD +
Sbjct: 247 GGGVTWFSRTQKCVTLSTTEVEYVAIADVLKEVLFLRQVWRLMLLDADMSCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFL 354
BLAST of mRNA_A-nodosum_M_contig10093.1.1 vs. uniprot
Match: A0A6H5K684_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K684_9PHAE) HSP 1 Score: 93.2 bits (230), Expect = 1.830e-20 Identity = 45/108 (41.67%), Postives = 72/108 (66.67%), Query Frame = 1 Query: 1 GGPISWFSRAQRVTASASSESEYVALAEIVNETKFLRQVQGLIISTLRSCTISIMEDN*GAIKMANNKHSSRRTRHIDVKHHIVRDAVEEGLVRIVYVRSEEQHADMI 324
GG ++WFSR Q+ +++E+EYVA+A+++ E FLRQV ++ I + EDN GAI++A+N ++ ++HIDV+HH +R+ VE + I +V SE QHAD +
Sbjct: 184 GGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFL 291
BLAST of mRNA_A-nodosum_M_contig10093.1.1 vs. uniprot
Match: A0A6H5KIJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIJ7_9PHAE) HSP 1 Score: 91.3 bits (225), Expect = 2.060e-20 Identity = 45/108 (41.67%), Postives = 70/108 (64.81%), Query Frame = 1 Query: 1 GGPISWFSRAQRVTASASSESEYVALAEIVNETKFLRQVQGLIISTLRSCTISIMEDN*GAIKMANNKHSSRRTRHIDVKHHIVRDAVEEGLVRIVYVRSEEQHADMI 324
GG +SWFSR Q+ +++E+EYVAL ++V E FLRQ+ ++ + I I EDN GAI++A N S+ ++HIDV+HH +R+ VE + +++V S Q AD +
Sbjct: 100 GGSVSWFSRTQKCVTLSTTEAEYVALGDVVKEIIFLRQIWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFL 207
BLAST of mRNA_A-nodosum_M_contig10093.1.1 vs. uniprot
Match: A0A6H5JWJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWJ4_9PHAE) HSP 1 Score: 91.3 bits (225), Expect = 3.570e-20 Identity = 44/108 (40.74%), Postives = 70/108 (64.81%), Query Frame = 1 Query: 1 GGPISWFSRAQRVTASASSESEYVALAEIVNETKFLRQVQGLIISTLRSCTISIMEDN*GAIKMANNKHSSRRTRHIDVKHHIVRDAVEEGLVRIVYVRSEEQHADMI 324
GG +SWFSR Q+ +++E+EYVAL ++V E FLRQ+ ++ + I + EDN GAI++A N S+ ++HIDV+HH +R+ VE + +++V S Q AD +
Sbjct: 129 GGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFL 236
BLAST of mRNA_A-nodosum_M_contig10093.1.1 vs. uniprot
Match: A0A6H5KEZ8_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEZ8_9PHAE) HSP 1 Score: 89.7 bits (221), Expect = 6.460e-20 Identity = 44/108 (40.74%), Postives = 69/108 (63.89%), Query Frame = 1 Query: 1 GGPISWFSRAQRVTASASSESEYVALAEIVNETKFLRQVQGLIISTLRSCTISIMEDN*GAIKMANNKHSSRRTRHIDVKHHIVRDAVEEGLVRIVYVRSEEQHADMI 324
GG +SWFSR Q+ +++E+EYVAL E+V FLRQ+ ++ + I + EDN GAI++A N S+ ++HIDV+HH +R+ VE + +++V S Q AD +
Sbjct: 89 GGAVSWFSRTQKCVTLSTTEAEYVALGEVVKVILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFL 196
BLAST of mRNA_A-nodosum_M_contig10093.1.1 vs. uniprot
Match: A0A6H5JHY5_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY5_9PHAE) HSP 1 Score: 93.2 bits (230), Expect = 8.000e-20 Identity = 45/108 (41.67%), Postives = 72/108 (66.67%), Query Frame = 1 Query: 1 GGPISWFSRAQRVTASASSESEYVALAEIVNETKFLRQVQGLIISTLRSCTISIMEDN*GAIKMANNKHSSRRTRHIDVKHHIVRDAVEEGLVRIVYVRSEEQHADMI 324
GG ++WFSR Q+ +++E+EYVA+A+++ E FLRQV ++ I + EDN GAI++A+N ++ ++HIDV+HH +R+ VE + I +V SE QHAD +
Sbjct: 1345 GGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFL 1452
BLAST of mRNA_A-nodosum_M_contig10093.1.1 vs. uniprot
Match: A0A6H5L3H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H4_9PHAE) HSP 1 Score: 92.4 bits (228), Expect = 8.270e-20 Identity = 45/108 (41.67%), Postives = 71/108 (65.74%), Query Frame = 1 Query: 1 GGPISWFSRAQRVTASASSESEYVALAEIVNETKFLRQVQGLIISTLRSCTISIMEDN*GAIKMANNKHSSRRTRHIDVKHHIVRDAVEEGLVRIVYVRSEEQHADMI 324
GG ++WFSR Q+ +++E+EYVA A+++ E FLRQV ++ I + EDN GAI++A+N ++ ++HIDV+HH +R+ VE + I +V SE QHAD +
Sbjct: 286 GGCVTWFSRTQKCVTLSTTEAEYVAFADVLKEVLFLRQVWRFMLPDTGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFL 393
BLAST of mRNA_A-nodosum_M_contig10093.1.1 vs. uniprot
Match: A0A6H5JI51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI51_9PHAE) HSP 1 Score: 88.2 bits (217), Expect = 1.010e-19 Identity = 44/106 (41.51%), Postives = 68/106 (64.15%), Query Frame = 1 Query: 1 GGPISWFSRAQRVTASASSESEYVALAEIVNETKFLRQVQGLIISTLRSCTISIMEDN*GAIKMANNKHSSRRTRHIDVKHHIVRDAVEEGLVRIVYVRSEEQHAD 318
GG +SWFSR Q+ +++E+EYVAL ++V E FLRQ+ ++ + I + EDN GAI++A N S+ ++HIDV+HH +R+ VE +++V S Q AD
Sbjct: 54 GGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQVAQNPISNSNSKHIDVRHHFLRELVERKESSVIHVPSPYQRAD 159 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10093.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig10093.1.1 >prot_A-nodosum_M_contig10093.1.1 ID=prot_A-nodosum_M_contig10093.1.1|Name=mRNA_A-nodosum_M_contig10093.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=47bp MANNKHSSRRTRHIDVKHHIVRDAVEEGLVRIVYVRSEEQHADMIG*back to top mRNA from alignment at A-nodosum_M_contig10093:412..741- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig10093.1.1 ID=mRNA_A-nodosum_M_contig10093.1.1|Name=mRNA_A-nodosum_M_contig10093.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=330bp|location=Sequence derived from alignment at A-nodosum_M_contig10093:412..741- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig10093:412..741- >mRNA_A-nodosum_M_contig10093.1.1 ID=mRNA_A-nodosum_M_contig10093.1.1|Name=mRNA_A-nodosum_M_contig10093.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=141bp|location=Sequence derived from alignment at A-nodosum_M_contig10093:412..741- (Ascophyllum nodosum dioecious)back to top |