mRNA_A-nodosum_M_contig10093.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10093.1.1
Unique NamemRNA_A-nodosum_M_contig10093.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig10093.1.1 vs. uniprot
Match: A0A6H5JUW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUW6_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 1.480e-20
Identity = 44/108 (40.74%), Postives = 70/108 (64.81%), Query Frame = 1 
Query:    1 GGPISWFSRAQRVTASASSESEYVALAEIVNETKFLRQVQGLIISTLRSCTISIMEDN*GAIKMANNKHSSRRTRHIDVKHHIVRDAVEEGLVRIVYVRSEEQHADMI 324
            GG +SWFSR Q+    +++E+EYVAL ++V E  FLRQ+   ++  +    I + EDN GAI++A N  S+  ++HIDV+HH +R+ VE   + +++V S  Q AD +
Sbjct:   84 GGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFL 191
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BLAST of mRNA_A-nodosum_M_contig10093.1.1 vs. uniprot
Match: A0A6H5JTK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK6_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.550e-20
Identity = 45/108 (41.67%), Postives = 71/108 (65.74%), Query Frame = 1 
Query:    1 GGPISWFSRAQRVTASASSESEYVALAEIVNETKFLRQVQGLIISTLRSCTISIMEDN*GAIKMANNKHSSRRTRHIDVKHHIVRDAVEEGLVRIVYVRSEEQHADMI 324
            GG +SWFSR Q+    +++E+EYV+LA+++ E  FLRQV+  ++       I ++EDN GAI++A N  S+  ++HIDV+HH +R+ V    + I +V S  QHAD +
Sbjct:  127 GGCMSWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVRRFVLPEAGMPCIPVLEDNQGAIQLAQNPISNSTSKHIDVRHHFIRELVRRKEISIFHVESAYQHADFL 234
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BLAST of mRNA_A-nodosum_M_contig10093.1.1 vs. uniprot
Match: A0A6H5KJP2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJP2_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.550e-20
Identity = 46/108 (42.59%), Postives = 72/108 (66.67%), Query Frame = 1 
Query:    1 GGPISWFSRAQRVTASASSESEYVALAEIVNETKFLRQVQGLIISTLRSCTISIMEDN*GAIKMANNKHSSRRTRHIDVKHHIVRDAVEEGLVRIVYVRSEEQHADMI 324
            GG ++WFSR Q+    +++E EYVA+A+++ E  FLRQV  L++       I + EDN GAI++A+N  ++  ++HIDV+HH +R+ VE   + I +V SE QHAD +
Sbjct:  247 GGGVTWFSRTQKCVTLSTTEVEYVAIADVLKEVLFLRQVWRLMLLDADMSCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFL 354
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BLAST of mRNA_A-nodosum_M_contig10093.1.1 vs. uniprot
Match: A0A6H5K684_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K684_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.830e-20
Identity = 45/108 (41.67%), Postives = 72/108 (66.67%), Query Frame = 1 
Query:    1 GGPISWFSRAQRVTASASSESEYVALAEIVNETKFLRQVQGLIISTLRSCTISIMEDN*GAIKMANNKHSSRRTRHIDVKHHIVRDAVEEGLVRIVYVRSEEQHADMI 324
            GG ++WFSR Q+    +++E+EYVA+A+++ E  FLRQV   ++       I + EDN GAI++A+N  ++  ++HIDV+HH +R+ VE   + I +V SE QHAD +
Sbjct:  184 GGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFL 291
[Close]
BLAST of mRNA_A-nodosum_M_contig10093.1.1 vs. uniprot
Match: A0A6H5KIJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIJ7_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 2.060e-20
Identity = 45/108 (41.67%), Postives = 70/108 (64.81%), Query Frame = 1 
Query:    1 GGPISWFSRAQRVTASASSESEYVALAEIVNETKFLRQVQGLIISTLRSCTISIMEDN*GAIKMANNKHSSRRTRHIDVKHHIVRDAVEEGLVRIVYVRSEEQHADMI 324
            GG +SWFSR Q+    +++E+EYVAL ++V E  FLRQ+   ++  +    I I EDN GAI++A N  S+  ++HIDV+HH +R+ VE   + +++V S  Q AD +
Sbjct:  100 GGSVSWFSRTQKCVTLSTTEAEYVALGDVVKEIIFLRQIWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFL 207
[Close]
BLAST of mRNA_A-nodosum_M_contig10093.1.1 vs. uniprot
Match: A0A6H5JWJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWJ4_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 3.570e-20
Identity = 44/108 (40.74%), Postives = 70/108 (64.81%), Query Frame = 1 
Query:    1 GGPISWFSRAQRVTASASSESEYVALAEIVNETKFLRQVQGLIISTLRSCTISIMEDN*GAIKMANNKHSSRRTRHIDVKHHIVRDAVEEGLVRIVYVRSEEQHADMI 324
            GG +SWFSR Q+    +++E+EYVAL ++V E  FLRQ+   ++  +    I + EDN GAI++A N  S+  ++HIDV+HH +R+ VE   + +++V S  Q AD +
Sbjct:  129 GGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFL 236
[Close]
BLAST of mRNA_A-nodosum_M_contig10093.1.1 vs. uniprot
Match: A0A6H5KEZ8_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEZ8_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 6.460e-20
Identity = 44/108 (40.74%), Postives = 69/108 (63.89%), Query Frame = 1 
Query:    1 GGPISWFSRAQRVTASASSESEYVALAEIVNETKFLRQVQGLIISTLRSCTISIMEDN*GAIKMANNKHSSRRTRHIDVKHHIVRDAVEEGLVRIVYVRSEEQHADMI 324
            GG +SWFSR Q+    +++E+EYVAL E+V    FLRQ+   ++  +    I + EDN GAI++A N  S+  ++HIDV+HH +R+ VE   + +++V S  Q AD +
Sbjct:   89 GGAVSWFSRTQKCVTLSTTEAEYVALGEVVKVILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFL 196
[Close]
BLAST of mRNA_A-nodosum_M_contig10093.1.1 vs. uniprot
Match: A0A6H5JHY5_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY5_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 8.000e-20
Identity = 45/108 (41.67%), Postives = 72/108 (66.67%), Query Frame = 1 
Query:    1 GGPISWFSRAQRVTASASSESEYVALAEIVNETKFLRQVQGLIISTLRSCTISIMEDN*GAIKMANNKHSSRRTRHIDVKHHIVRDAVEEGLVRIVYVRSEEQHADMI 324
            GG ++WFSR Q+    +++E+EYVA+A+++ E  FLRQV   ++       I + EDN GAI++A+N  ++  ++HIDV+HH +R+ VE   + I +V SE QHAD +
Sbjct: 1345 GGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFL 1452
[Close]
BLAST of mRNA_A-nodosum_M_contig10093.1.1 vs. uniprot
Match: A0A6H5L3H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H4_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 8.270e-20
Identity = 45/108 (41.67%), Postives = 71/108 (65.74%), Query Frame = 1 
Query:    1 GGPISWFSRAQRVTASASSESEYVALAEIVNETKFLRQVQGLIISTLRSCTISIMEDN*GAIKMANNKHSSRRTRHIDVKHHIVRDAVEEGLVRIVYVRSEEQHADMI 324
            GG ++WFSR Q+    +++E+EYVA A+++ E  FLRQV   ++       I + EDN GAI++A+N  ++  ++HIDV+HH +R+ VE   + I +V SE QHAD +
Sbjct:  286 GGCVTWFSRTQKCVTLSTTEAEYVAFADVLKEVLFLRQVWRFMLPDTGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFL 393
[Close]
BLAST of mRNA_A-nodosum_M_contig10093.1.1 vs. uniprot
Match: A0A6H5JI51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI51_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 1.010e-19
Identity = 44/106 (41.51%), Postives = 68/106 (64.15%), Query Frame = 1 
Query:    1 GGPISWFSRAQRVTASASSESEYVALAEIVNETKFLRQVQGLIISTLRSCTISIMEDN*GAIKMANNKHSSRRTRHIDVKHHIVRDAVEEGLVRIVYVRSEEQHAD 318
            GG +SWFSR Q+    +++E+EYVAL ++V E  FLRQ+   ++  +    I + EDN GAI++A N  S+  ++HIDV+HH +R+ VE     +++V S  Q AD
Sbjct:   54 GGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQVAQNPISNSNSKHIDVRHHFLRELVERKESSVIHVPSPYQRAD 159
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10093.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUW6_9PHAE1.480e-2040.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTK6_9PHAE1.550e-2041.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJP2_9PHAE1.550e-2042.59Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K684_9PHAE1.830e-2041.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIJ7_9PHAE2.060e-2041.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWJ4_9PHAE3.570e-2040.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEZ8_9PHAE6.460e-2040.74Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHY5_9PHAE8.000e-2041.67Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5L3H4_9PHAE8.270e-2041.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JI51_9PHAE1.010e-1941.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10093contigA-nodosum_M_contig10093:412..741 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog7029.ACYPI35092-PA
Model size330
Max annot lvl7029.ACYPI35092-PA|-
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.47e-06
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38VJ1@33154|Opisthokonta,3CB3U@33208|Metazoa,3DT1J@33213|Bilateria,4294G@6656|Arthropoda,3SW1M@50557|Insecta,3EE1Z@33342|Paraneoptera
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size141
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866367.7673435-CDS-A-nodosum_M_contig10093:411..5521680866367.7673435-CDS-A-nodosum_M_contig10093:411..552Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10093 412..552 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866367.8217223-UTR-A-nodosum_M_contig10093:552..7411680866367.8217223-UTR-A-nodosum_M_contig10093:552..741Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10093 553..741 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10093.1.1prot_A-nodosum_M_contig10093.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10093 412..552 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10093.1.1

>prot_A-nodosum_M_contig10093.1.1 ID=prot_A-nodosum_M_contig10093.1.1|Name=mRNA_A-nodosum_M_contig10093.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=47bp
MANNKHSSRRTRHIDVKHHIVRDAVEEGLVRIVYVRSEEQHADMIG*
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mRNA from alignment at A-nodosum_M_contig10093:412..741-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10093.1.1 ID=mRNA_A-nodosum_M_contig10093.1.1|Name=mRNA_A-nodosum_M_contig10093.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=330bp|location=Sequence derived from alignment at A-nodosum_M_contig10093:412..741- (Ascophyllum nodosum dioecious)
GGTGGCCCGATAAGTTGGTTCTCACGCGCACAGAGGGTAACAGCGTCGGC
GTCATCCGAGTCGGAGTATGTGGCGCTTGCAGAAATCGTGAATGAAACTA
AGTTCCTTCGTCAGGTGCAAGGGTTAATCATTTCTACTCTGAGGAGCTGC
ACGATCTCAATCATGGAGGATAATTAAGGTGCAATCAAGATGGCGAACAA
CAAACACAGCAGCAGAAGAACGCGCCACATCGACGTCAAACACCACATTG
TTCGAGACGCCGTCGAGGAGGGATTGGTCCGTATTGTTTATGTTAGGAGC
GAAGAGCAGCATGCAGACATGATTGGATGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10093:412..741-

>mRNA_A-nodosum_M_contig10093.1.1 ID=mRNA_A-nodosum_M_contig10093.1.1|Name=mRNA_A-nodosum_M_contig10093.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=141bp|location=Sequence derived from alignment at A-nodosum_M_contig10093:412..741- (Ascophyllum nodosum dioecious)
ATGGCGAACAACAAACACAGCAGCAGAAGAACGCGCCACATCGACGTCAA
ACACCACATTGTTCGAGACGCCGTCGAGGAGGGATTGGTCCGTATTGTTT
ATGTTAGGAGCGAAGAGCAGCATGCAGACATGATTGGATGA
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