Homology
BLAST of mRNA_A-nodosum_M_contig10081.1.1 vs. uniprot
Match:
D7FH66_ECTSI (RNA-binding S4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH66_ECTSI)
HSP 1 Score: 60.8 bits (146), Expect = 1.650e-10
Identity = 28/35 (80.00%), Postives = 32/35 (91.43%), Query Frame = 1
Query: 1 VKEGDIVTVRGKGRVEVVGITVTKKGRYKVDMART 105
V+EGDIVTVRGKGRVE+ ITVTKKGRYK++M RT
Sbjct: 123 VREGDIVTVRGKGRVEIGDITVTKKGRYKINMCRT 157
BLAST of mRNA_A-nodosum_M_contig10081.1.1 vs. uniprot
Match:
A0A6H5J7Q1_9PHAE (S4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7Q1_9PHAE)
HSP 1 Score: 61.2 bits (147), Expect = 5.890e-10
Identity = 28/35 (80.00%), Postives = 32/35 (91.43%), Query Frame = 1
Query: 1 VKEGDIVTVRGKGRVEVVGITVTKKGRYKVDMART 105
VKEGD+VTVRGKGRVE+ ITVTKKGRYK++M RT
Sbjct: 292 VKEGDVVTVRGKGRVEIGDITVTKKGRYKINMRRT 326
BLAST of mRNA_A-nodosum_M_contig10081.1.1 vs. uniprot
Match:
A0A7C9PSN9_9CYAN (Photosystem II S4 domain protein n=1 Tax=Oscillatoria sp. SIO1A7 TaxID=2607767 RepID=A0A7C9PSN9_9CYAN)
HSP 1 Score: 52.0 bits (123), Expect = 1.030e-6
Identity = 22/34 (64.71%), Postives = 28/34 (82.35%), Query Frame = 1
Query: 1 VKEGDIVTVRGKGRVEVVGITVTKKGRYKVDMAR 102
VK GD++ +RGKGR+EV IT+TKKGRY+V M R
Sbjct: 224 VKSGDLIAIRGKGRLEVGEITITKKGRYRVQMTR 257
BLAST of mRNA_A-nodosum_M_contig10081.1.1 vs. uniprot
Match:
A0A0M1JYR8_9CYAN (RNA-binding protein n=1 Tax=Planktothricoides sp. SR001 TaxID=1705388 RepID=A0A0M1JYR8_9CYAN)
HSP 1 Score: 51.2 bits (121), Expect = 1.950e-6
Identity = 22/34 (64.71%), Postives = 28/34 (82.35%), Query Frame = 1
Query: 1 VKEGDIVTVRGKGRVEVVGITVTKKGRYKVDMAR 102
VK D++ +RGKGR+EV ITVTKKGRY+VD+ R
Sbjct: 224 VKSNDLIAIRGKGRLEVGEITVTKKGRYRVDLTR 257
BLAST of mRNA_A-nodosum_M_contig10081.1.1 vs. uniprot
Match:
A0A7S3UWV6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWV6_HETAK)
HSP 1 Score: 49.3 bits (116), Expect = 5.930e-6
Identity = 22/32 (68.75%), Postives = 27/32 (84.38%), Query Frame = 1
Query: 1 VKEGDIVTVRGKGRVEVVGITVTKKGRYKVDM 96
VKEGD+VTVRGKGRVE++ I T KGR++V M
Sbjct: 145 VKEGDVVTVRGKGRVEILEIAKTAKGRFRVTM 176
BLAST of mRNA_A-nodosum_M_contig10081.1.1 vs. uniprot
Match:
A0A350YAT2_9CYAN (Photosystem II S4 domain protein n=1 Tax=Cyanobacteria bacterium UBA11370 TaxID=2055769 RepID=A0A350YAT2_9CYAN)
HSP 1 Score: 49.7 bits (117), Expect = 7.050e-6
Identity = 21/36 (58.33%), Postives = 28/36 (77.78%), Query Frame = 1
Query: 1 VKEGDIVTVRGKGRVEVVGITVTKKGRYKVDMARTM 108
VK GD++ +RGKGR+EV +TVTKK RY+V + R M
Sbjct: 224 VKSGDLIAIRGKGRLEVGEVTVTKKDRYRVQLTRLM 259
BLAST of mRNA_A-nodosum_M_contig10081.1.1 vs. uniprot
Match:
A0A6P0SBI0_9CYAN (Photosystem II S4 domain protein (Fragment) n=1 Tax=Moorena sp. SIO2I5 TaxID=2607825 RepID=A0A6P0SBI0_9CYAN)
HSP 1 Score: 48.5 bits (114), Expect = 1.040e-5
Identity = 19/34 (55.88%), Postives = 28/34 (82.35%), Query Frame = 1
Query: 1 VKEGDIVTVRGKGRVEVVGITVTKKGRYKVDMAR 102
VK GD++ +RGKGR+EV +++TKK RY+VD+ R
Sbjct: 135 VKSGDLIAIRGKGRLEVGDVSITKKQRYRVDLTR 168
BLAST of mRNA_A-nodosum_M_contig10081.1.1 vs. uniprot
Match:
A0A2P6TLW0_CHLSO (Photosystem II S4 domain n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TLW0_CHLSO)
HSP 1 Score: 48.9 bits (115), Expect = 1.120e-5
Identity = 21/34 (61.76%), Postives = 28/34 (82.35%), Query Frame = 1
Query: 1 VKEGDIVTVRGKGRVEVVGITVTKKGRYKVDMAR 102
VK GD+++V GKGR+EV G ++TKKG+Y V MAR
Sbjct: 182 VKAGDVISVAGKGRLEVRGASMTKKGKYSVQMAR 215
BLAST of mRNA_A-nodosum_M_contig10081.1.1 vs. uniprot
Match:
UPI0019ED3DDA (Photosystem II S4 domain protein n=1 Tax=Pleurocapsales cyanobacterium LEGE 10410 TaxID=1828828 RepID=UPI0019ED3DDA)
HSP 1 Score: 48.9 bits (115), Expect = 1.330e-5
Identity = 21/34 (61.76%), Postives = 29/34 (85.29%), Query Frame = 1
Query: 1 VKEGDIVTVRGKGRVEVVGITVTKKGRYKVDMAR 102
VKEGD++ VRGKGR+EV ++VTKK RY+V++ R
Sbjct: 223 VKEGDLIAVRGKGRLEVGEVSVTKKQRYRVNLVR 256
BLAST of mRNA_A-nodosum_M_contig10081.1.1 vs. uniprot
Match:
A0A563VPY8_9CYAN (Photosystem II S4 domain protein n=1 Tax=Hyella patelloides LEGE 07179 TaxID=945734 RepID=A0A563VPY8_9CYAN)
HSP 1 Score: 48.9 bits (115), Expect = 1.340e-5
Identity = 21/34 (61.76%), Postives = 29/34 (85.29%), Query Frame = 1
Query: 1 VKEGDIVTVRGKGRVEVVGITVTKKGRYKVDMAR 102
VK GD+++VRGKGR+EV ++VTKK RY+VD+ R
Sbjct: 224 VKAGDLISVRGKGRLEVGEVSVTKKQRYRVDLVR 257
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10081.1.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 25
0 1 Expect = 1.65e-10 / Id = 80.00 Expect = 5.89e-10 / Id = 80.00 Expect = 1.03e-6 / Id = 64.71 Expect = 1.95e-6 / Id = 64.71 Expect = 5.93e-6 / Id = 68.75 Expect = 7.05e-6 / Id = 58.33 Expect = 1.04e-5 / Id = 55.88 Expect = 1.12e-5 / Id = 61.76 Expect = 1.33e-5 / Id = 61.76 Expect = 1.34e-5 / Id = 61.76 Sequence D7FH66_ECTSI A0A6H5J7Q1_9PHAE A0A7C9PSN9_9CYAN A0A0M1JYR8_9CYAN A0A7S3UWV6_HETAK A0A350YAT2_9CYAN A0A6P0SBI0_9CYAN A0A2P6TLW0_CHLSO UPI0019ED3DDA A0A563VPY8_9CYAN Pages
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Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig10081.1.1
>prot_A-nodosum_M_contig10081.1.1 ID=prot_A-nodosum_M_contig10081.1.1|Name=mRNA_A-nodosum_M_contig10081.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=37bp
VKEGDIVTVRGKGRVEVVGITVTKKGRYKVDMARTM* back to top mRNA from alignment at A-nodosum_M_contig10081:4874..4984+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10081.1.1 ID=mRNA_A-nodosum_M_contig10081.1.1|Name=mRNA_A-nodosum_M_contig10081.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=111bp|location=Sequence derived from alignment at A-nodosum_M_contig10081:4874..4984+ (Ascophyllum nodosum dioecious)GTGAAGGAAGGAGACATTGTGACCGTCAGAGGAAAAGGGAGAGTCGAGGT
AGTTGGCATTACGGTTACGAAGAAGGGCCGTTACAAGGTCGACATGGCCA
GGACCATGTGA back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig10081:4874..4984+
>mRNA_A-nodosum_M_contig10081.1.1 ID=mRNA_A-nodosum_M_contig10081.1.1|Name=mRNA_A-nodosum_M_contig10081.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=111bp|location=Sequence derived from alignment at A-nodosum_M_contig10081:4874..4984+ (Ascophyllum nodosum dioecious) back to top