mRNA_A-nodosum_M_contig10081.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10081.1.1
Unique NamemRNA_A-nodosum_M_contig10081.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig10081.1.1 vs. uniprot
Match: D7FH66_ECTSI (RNA-binding S4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH66_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 1.650e-10
Identity = 28/35 (80.00%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:    1 VKEGDIVTVRGKGRVEVVGITVTKKGRYKVDMART 105
            V+EGDIVTVRGKGRVE+  ITVTKKGRYK++M RT
Sbjct:  123 VREGDIVTVRGKGRVEIGDITVTKKGRYKINMCRT 157
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BLAST of mRNA_A-nodosum_M_contig10081.1.1 vs. uniprot
Match: A0A6H5J7Q1_9PHAE (S4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7Q1_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 5.890e-10
Identity = 28/35 (80.00%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:    1 VKEGDIVTVRGKGRVEVVGITVTKKGRYKVDMART 105
            VKEGD+VTVRGKGRVE+  ITVTKKGRYK++M RT
Sbjct:  292 VKEGDVVTVRGKGRVEIGDITVTKKGRYKINMRRT 326
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BLAST of mRNA_A-nodosum_M_contig10081.1.1 vs. uniprot
Match: A0A7C9PSN9_9CYAN (Photosystem II S4 domain protein n=1 Tax=Oscillatoria sp. SIO1A7 TaxID=2607767 RepID=A0A7C9PSN9_9CYAN)

HSP 1 Score: 52.0 bits (123), Expect = 1.030e-6
Identity = 22/34 (64.71%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:    1 VKEGDIVTVRGKGRVEVVGITVTKKGRYKVDMAR 102
            VK GD++ +RGKGR+EV  IT+TKKGRY+V M R
Sbjct:  224 VKSGDLIAIRGKGRLEVGEITITKKGRYRVQMTR 257
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BLAST of mRNA_A-nodosum_M_contig10081.1.1 vs. uniprot
Match: A0A0M1JYR8_9CYAN (RNA-binding protein n=1 Tax=Planktothricoides sp. SR001 TaxID=1705388 RepID=A0A0M1JYR8_9CYAN)

HSP 1 Score: 51.2 bits (121), Expect = 1.950e-6
Identity = 22/34 (64.71%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:    1 VKEGDIVTVRGKGRVEVVGITVTKKGRYKVDMAR 102
            VK  D++ +RGKGR+EV  ITVTKKGRY+VD+ R
Sbjct:  224 VKSNDLIAIRGKGRLEVGEITVTKKGRYRVDLTR 257
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BLAST of mRNA_A-nodosum_M_contig10081.1.1 vs. uniprot
Match: A0A7S3UWV6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWV6_HETAK)

HSP 1 Score: 49.3 bits (116), Expect = 5.930e-6
Identity = 22/32 (68.75%), Postives = 27/32 (84.38%), Query Frame = 1 
Query:    1 VKEGDIVTVRGKGRVEVVGITVTKKGRYKVDM 96
            VKEGD+VTVRGKGRVE++ I  T KGR++V M
Sbjct:  145 VKEGDVVTVRGKGRVEILEIAKTAKGRFRVTM 176
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BLAST of mRNA_A-nodosum_M_contig10081.1.1 vs. uniprot
Match: A0A350YAT2_9CYAN (Photosystem II S4 domain protein n=1 Tax=Cyanobacteria bacterium UBA11370 TaxID=2055769 RepID=A0A350YAT2_9CYAN)

HSP 1 Score: 49.7 bits (117), Expect = 7.050e-6
Identity = 21/36 (58.33%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    1 VKEGDIVTVRGKGRVEVVGITVTKKGRYKVDMARTM 108
            VK GD++ +RGKGR+EV  +TVTKK RY+V + R M
Sbjct:  224 VKSGDLIAIRGKGRLEVGEVTVTKKDRYRVQLTRLM 259
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BLAST of mRNA_A-nodosum_M_contig10081.1.1 vs. uniprot
Match: A0A6P0SBI0_9CYAN (Photosystem II S4 domain protein (Fragment) n=1 Tax=Moorena sp. SIO2I5 TaxID=2607825 RepID=A0A6P0SBI0_9CYAN)

HSP 1 Score: 48.5 bits (114), Expect = 1.040e-5
Identity = 19/34 (55.88%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:    1 VKEGDIVTVRGKGRVEVVGITVTKKGRYKVDMAR 102
            VK GD++ +RGKGR+EV  +++TKK RY+VD+ R
Sbjct:  135 VKSGDLIAIRGKGRLEVGDVSITKKQRYRVDLTR 168
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BLAST of mRNA_A-nodosum_M_contig10081.1.1 vs. uniprot
Match: A0A2P6TLW0_CHLSO (Photosystem II S4 domain n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TLW0_CHLSO)

HSP 1 Score: 48.9 bits (115), Expect = 1.120e-5
Identity = 21/34 (61.76%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:    1 VKEGDIVTVRGKGRVEVVGITVTKKGRYKVDMAR 102
            VK GD+++V GKGR+EV G ++TKKG+Y V MAR
Sbjct:  182 VKAGDVISVAGKGRLEVRGASMTKKGKYSVQMAR 215
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BLAST of mRNA_A-nodosum_M_contig10081.1.1 vs. uniprot
Match: UPI0019ED3DDA (Photosystem II S4 domain protein n=1 Tax=Pleurocapsales cyanobacterium LEGE 10410 TaxID=1828828 RepID=UPI0019ED3DDA)

HSP 1 Score: 48.9 bits (115), Expect = 1.330e-5
Identity = 21/34 (61.76%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    1 VKEGDIVTVRGKGRVEVVGITVTKKGRYKVDMAR 102
            VKEGD++ VRGKGR+EV  ++VTKK RY+V++ R
Sbjct:  223 VKEGDLIAVRGKGRLEVGEVSVTKKQRYRVNLVR 256
[Close]
BLAST of mRNA_A-nodosum_M_contig10081.1.1 vs. uniprot
Match: A0A563VPY8_9CYAN (Photosystem II S4 domain protein n=1 Tax=Hyella patelloides LEGE 07179 TaxID=945734 RepID=A0A563VPY8_9CYAN)

HSP 1 Score: 48.9 bits (115), Expect = 1.340e-5
Identity = 21/34 (61.76%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    1 VKEGDIVTVRGKGRVEVVGITVTKKGRYKVDMAR 102
            VK GD+++VRGKGR+EV  ++VTKK RY+VD+ R
Sbjct:  224 VKAGDLISVRGKGRLEVGEVSVTKKQRYRVDLVR 257
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10081.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FH66_ECTSI1.650e-1080.00RNA-binding S4 n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A6H5J7Q1_9PHAE5.890e-1080.00S4 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A7C9PSN9_9CYAN1.030e-664.71Photosystem II S4 domain protein n=1 Tax=Oscillato... [more]
A0A0M1JYR8_9CYAN1.950e-664.71RNA-binding protein n=1 Tax=Planktothricoides sp. ... [more]
A0A7S3UWV6_HETAK5.930e-668.75Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A350YAT2_9CYAN7.050e-658.33Photosystem II S4 domain protein n=1 Tax=Cyanobact... [more]
A0A6P0SBI0_9CYAN1.040e-555.88Photosystem II S4 domain protein (Fragment) n=1 Ta... [more]
A0A2P6TLW0_CHLSO1.120e-561.76Photosystem II S4 domain n=1 Tax=Chlorella sorokin... [more]
UPI0019ED3DDA1.330e-561.76Photosystem II S4 domain protein n=1 Tax=Pleurocap... [more]
A0A563VPY8_9CYAN1.340e-561.76Photosystem II S4 domain protein n=1 Tax=Hyella pa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10081contigA-nodosum_M_contig10081:4874..4984 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FH66
PFAMsS4
Model size111
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue2.71e-11
EggNOG OGsCOG2302@1|root,KOG4837@2759|Eukaryota
Descriptionisoleucyl-tRNA aminoacylation
Cds size111
COG categoryJ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866365.1742356-CDS-A-nodosum_M_contig10081:4873..49841680866365.1742356-CDS-A-nodosum_M_contig10081:4873..4984Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10081 4874..4984 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10081.1.1prot_A-nodosum_M_contig10081.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10081 4874..4984 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10081.1.1

>prot_A-nodosum_M_contig10081.1.1 ID=prot_A-nodosum_M_contig10081.1.1|Name=mRNA_A-nodosum_M_contig10081.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=37bp
VKEGDIVTVRGKGRVEVVGITVTKKGRYKVDMARTM*
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mRNA from alignment at A-nodosum_M_contig10081:4874..4984+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10081.1.1 ID=mRNA_A-nodosum_M_contig10081.1.1|Name=mRNA_A-nodosum_M_contig10081.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=111bp|location=Sequence derived from alignment at A-nodosum_M_contig10081:4874..4984+ (Ascophyllum nodosum dioecious)
GTGAAGGAAGGAGACATTGTGACCGTCAGAGGAAAAGGGAGAGTCGAGGT
AGTTGGCATTACGGTTACGAAGAAGGGCCGTTACAAGGTCGACATGGCCA
GGACCATGTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10081:4874..4984+

>mRNA_A-nodosum_M_contig10081.1.1 ID=mRNA_A-nodosum_M_contig10081.1.1|Name=mRNA_A-nodosum_M_contig10081.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=111bp|location=Sequence derived from alignment at A-nodosum_M_contig10081:4874..4984+ (Ascophyllum nodosum dioecious)
GTGAAGGAAGGAGACATTGTGACCGTCAGAGGAAAAGGGAGAGTCGAGGT
AGTTGGCATTACGGTTACGAAGAAGGGCCGTTACAAGGTCGACATGGCCA
GGACCATGTGA
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