mRNA_A-nodosum_M_contig10054.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10054.2.1
Unique NamemRNA_A-nodosum_M_contig10054.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig10054.2.1 vs. uniprot
Match: A0A6H5KKF7_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKF7_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 5.860e-31
Identity = 68/121 (56.20%), Postives = 89/121 (73.55%), Query Frame = 3 
Query:    3 PPPVRLVFEDLEATGLPEAPGGGLRNPFVMFSSDPKHLIKTSSAKGKLPKTEIRRRTLDPRWSSKTCQLTVSDPVALRHSHVCLIVMNREQG--VKDEILGVANFSLAEATWVNSQRPAPA 359
            PPP RL+ EDLE   L    GGG+RNP+V+FSSDPKHL+K S A GK PKT ++++TL  +W+  + QL +SDPV LRHSHV L+VM++E+G   K E++GVAN SLAE  W+N+  PA A
Sbjct:  355 PPPPRLLLEDLEVFDLLGIAGGGVRNPYVVFSSDPKHLVKASPA-GKPPKTTVKKKTLRAKWNKYSFQLAISDPVLLRHSHVSLVVMDKERGRNSKGEVIGVANLSLAEVLWINNSPPASA 474
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BLAST of mRNA_A-nodosum_M_contig10054.2.1 vs. uniprot
Match: D8LK92_ECTSI (C2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK92_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 5.000e-29
Identity = 66/120 (55.00%), Postives = 86/120 (71.67%), Query Frame = 3 
Query:    6 PPVRLVFEDLEATGLPEAPGGGLRNPFVMFSSDPKHLIKTSSAKGKLPKTEIRRRTLDPRWSSKTCQLTVSDPVALRHSHVCLIVMNREQGVKD--EILGVANFSLAEATWVNSQRPAPA 359
            PP RL+ EDLE   L    GGG+RNP+V+FSSDPKHL+K S A GK PKT ++++TL  +W+    QL +SDPV LR SHV L+VM++E+G K   E++GVAN SLAE  W+N+  PA A
Sbjct:  404 PPPRLLLEDLEVFDLQGIAGGGVRNPYVVFSSDPKHLVKASPA-GKPPKTTVKKKTLRAKWNRYAFQLAISDPVLLRQSHVSLVVMDKERGRKSKGEVIGVANLSLAEVLWINNGPPASA 522
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10054.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KKF7_9PHAE5.860e-3156.20C2 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LK92_ECTSI5.000e-2955.00C2 domain-containing protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10054contigA-nodosum_M_contig10054:5288..11341 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LK92
Preferred nameINPP5E
PFAMsAminotran_3,C2,Exo_endo_phos,Kinesin
Model size1211
Max annot lvl2759|Eukaryota
KEGG rclassRC00005,RC00078,RC00482
KEGG koko:K07151,ko:K20278
KEGG ReactionR04216,R04404,R05976,R09827
KEGG Pathwayko00510,ko00513,ko00562,ko01100,ko04070,ko04141,map00510,map00513,map00562,map01100,map04070,map04141
KEGG ModuleM00072
Hectar predicted targeting categoryother localisation
Exons4
Evalue8.84e-20
EggNOG OGsCOG5411@1|root,KOG0565@2759|Eukaryota
EC2.4.99.18,3.1.3.36
Descriptionphosphatidylinositol dephosphorylation
Cds size903
COG categoryT
CAZyGT66
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10054.2.1prot_A-nodosum_M_contig10054.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10054 5507..9020 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866363.2264674-UTR-A-nodosum_M_contig10054:5287..55061680866363.2264674-UTR-A-nodosum_M_contig10054:5287..5506Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10054 5288..5506 -
1680866363.38381-UTR-A-nodosum_M_contig10054:9020..90471680866363.38381-UTR-A-nodosum_M_contig10054:9020..9047Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10054 9021..9047 -
1680866363.3960967-UTR-A-nodosum_M_contig10054:11279..113411680866363.3960967-UTR-A-nodosum_M_contig10054:11279..11341Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10054 11280..11341 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866363.3508494-CDS-A-nodosum_M_contig10054:5506..61671680866363.3508494-CDS-A-nodosum_M_contig10054:5506..6167Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10054 5507..6167 -
1680866363.3647468-CDS-A-nodosum_M_contig10054:7040..71871680866363.3647468-CDS-A-nodosum_M_contig10054:7040..7187Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10054 7041..7187 -
1680866363.3749902-CDS-A-nodosum_M_contig10054:8925..90201680866363.3749902-CDS-A-nodosum_M_contig10054:8925..9020Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10054 8926..9020 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10054.2.1

>prot_A-nodosum_M_contig10054.2.1 ID=prot_A-nodosum_M_contig10054.2.1|Name=mRNA_A-nodosum_M_contig10054.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=301bp
MFSSDPKHLIKTSSAKGKLPKTEIRRRTLDPRWSSKTCQLTVSDPVALRH
SHVCLIVMNREQGVKDEILGVANFSLAEATWVNSQRPAPAPAATGRPAAR
QSSIASSRSGLQSSPALARGPGPVAPENRTLFATVGDIYCDAEGDADDFD
DTGIDFDGVDLEEEDADVGAARGSVEEIPAFDLLLVRNGLPRGRIRGRCS
LLLGPEKDGGGGEFLGGERGFRRRGHRDDIGCWWAGRRVWRGGRRRTESQ
TGAVRSQQGRSETPLSRAPASSPIPRLAWLLCKRGGGVNFRHKAGVQCTY
*
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mRNA from alignment at A-nodosum_M_contig10054:5288..11341-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10054.2.1 ID=mRNA_A-nodosum_M_contig10054.2.1|Name=mRNA_A-nodosum_M_contig10054.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=6054bp|location=Sequence derived from alignment at A-nodosum_M_contig10054:5288..11341- (Ascophyllum nodosum dioecious)
AGCCGCCGCCGGTTCGGCTGGTTTTCGAAGATTTGGAGGCGACCGGACTG
CCGGAAGCACCGGTAAGCAATGTCGCCCCCCTCAGGCGTGCCATTTCTGT
ACGGTCGGCATTGTTGTTTCACGTTAAATATTTAGTGGTACTTTGAATCG
TGGCAGGTTGAGCTATATGTATTACAGTAGTATTCAATTTGTTCTATATT
TCTCATGATATTAGATAGATACTTTCAACATGCCCACTTCATACCAATAT
CAATAGTGGATGTGGGAAAAGAGAGGCGCACATTATTAGTTGGTCTACGG
TGATGCGAGTACTACCGGCCCTTTGCCGGCGGACTCTCGGTAGTGAACGC
CATCGGTACGCAACTGCGTGACCCGATAAACTCGGGACTGACCCGATGGC
GTATGGCGGTTTAAATAAATAAATGGACGTCGCCGCAGAAATTGGGAGGA
ATCCCGTGAGTAAGCACCAGATGTAGCCTGAGTGTGGAGAATGAGCAGGC
TGACGCGGGACGGGACGGCCGAACCCGTCTCGCGAGACCAAATTCTCAGG
CGCAAACGGGACAGGGAAATATTAATTTTCTCTGTTCAGCTGACCACTAT
TAGAGCAGGATCGGTAACCTTACCCGGTTGATTCATACCGGTACTCTGCT
ACTACTACATAGATAGATAGACCATATAGATAGATAGAGCTATATATTAT
TACAGTTGTACTATTTACTTATTAATTTTCTCATTATGTTATATTAACGA
GGTATTATTTGTAGTGCCTTATGTTTCAAAAAGCGTACTTTTCTGTGTAT
TTATTTCCTTGTCTGGTATTAGTTTTCAAGTATCAAAATGTTGATTTATT
TCCTGTGGATCCCCGGGCAAAGAAATGCCTAGCAGCACACTGAGGCGTGC
TGCCTGGGAGGAAGTGTTAGAAGAATTTTCTACGGATTGCTCTGCTTCCG
ACTGGGTTTTCCTTTTACCGATGGCGTTTGTGTGTGTGTTTGTTTTGTTT
TGTTTGATGTGGGGGTGCACACGCTAATGGTAATATAATGTGTCCCTTCC
CTTCCCTCTACTCATCTCAAAATCTAAAAAAATCTGCCCCCGACGAAGGT
CACGCACGGTACGTCTGGAGTTGGTAGATAAAATCTCGACATAAGCGGCG
TATTTTCGCTATCTAGAAATTGGCTTGAATCCAAAAGCCGAGGGAGCTCT
AGACCCCCACTGTCTATATAAATAGTTTTATTCTGATTTGTACCGTACTG
ATGGCCTTCAGAGAGGAGGGAGGGAACCACGATTTGCTCTGTTGACAGAA
CTACGTGCTCTGAGGCGAATGCTTCACGACACCCAGTCAGCGCGCTGACC
ATGGGCATGTGGGCTTTGCCGTTTGATTTCAGCCATGAGATACTGTATGT
AGCTACACCGGAGGGGTTCGAAAGCTCCCACCGACGTCACCCCAAGGTCA
CTGCTTTTGGTAACCCTTGTTGTAAAAATAAATCGGTTCTCTCCGGCGGA
ATTGGCCAGTCAAAAGGATTTCGTTTTTTGTTCCCAATCTATCATATCCT
TCGAACCGAAGAAGCAAAATCCCATCGTCTCTTATCTCGTGTGACAGAGA
TTTGATTTCAATAGCGTTTCCGACTCGTCAATTTTTGAGAGAAGAGGATG
ATCGAGACACCGAGGATCGAACCCTGGATTAGAGGTTACTGTATTCGAGG
TTCCTTATGGTTCAGTGGTTTGTTTCATTACAACACCAAACAGTCCTTTC
AAATTTGAATACCCTCAAGTATTTCATAGTAGTCTTGTTTATTTTGGAGG
GGGGCTTGTCTATTGGCCCAAAACATAATTTTCTACACGCTATCCAAGAT
GAACCTCTTGTTCTGAGTGTTTCAACTAAAATAATGCAGACACGGGTACC
ACCTACACCTAGCCACAGAGATGTTTAGCTGTAAATAACTCCTATAAAAT
AGTACTCTGTAATAGTGCCATCTCTAAGCTGGAATGTAACAGTCAACGTA
GACAAGCGGAAGCAGTTGAAATATTTTAACAAAAGAGTACCCGACTCTTC
GACTTGTTTTCTACGAGATCAGGTTCTCAGGCGGGGACGGGAGACGGGGG
GAAATATTTATTTTCCACGTTCAGCTGACCGCAAGCAGCATTGTCAACCA
TACCCGGTTGATGATGCCCAGTCTTGCCATATTAAAATAAAATGAAAGCG
ATGACAAACACTAACAAGAAGAACAATAAGAATTACTGATGTACAGTATC
AATAATATTTCTGCTGCTACGAACACGGTGAAATAACCACCCAGGGAGGC
GGACTGCGCAACCCGTTCGTCATGTTCTCTTCTGATCCGAAGCACCTTAT
CAAGACCTCGTCGGCCAAGGGAAAGCTTCCTAAGACGGAGATTCGAAGGA
GGACCCTAGACCCTAGGTATGTAAAAGTGTGTTATGCTTCCAATGTACCA
GGTATACTGCATGTGTGTTACACAACACAGACAATAGTATGCATGTTTAT
CTAGGGGGGGGGGGGTGCACTTGAATGTAGTACCGTATTCATTATGGTTG
GATCCATCATAGTATAGTACCTTGAATACTGGAGAAACTATTGGTGTGTG
TGTGTGTGTGTGTCTGTGTTGTTGTCTTGTCATATTCAGCGTATTGGTTG
CCAATCTGGAAAAACTCCTTTACACGGTGACCGATCCCGCTCGTGGTTTG
CAGAACAGGGAAAATAGAACAAAAAGAGAAAGCCTGGCAGCACCTCCCTC
CCCCCACCCCCCCCTACCCCGAGCGCTGCTCGTTATTAATAGGAAGAAAT
AAATACTATTAATAATACTATACTGTACCTTGAAACCTTTCTATTTTATG
TGGCGCACTCAAAAGTACAAAGTCTTGGTCTGCGTTTCTTTGTGGGAGCA
ATTAATTTAGGGTTTTACTGGGGATTTTTCCAGCAATTTTGTGAAGTTTT
ACACGTCATCCGGTCCATGGGAGTTGCAAAACTTAATTAGACAGCGTTCA
GATTTTCTATTGAAAAAATACGTTACTCGAGCTATACCTTGAGGACCAAT
AATTGTTTAGCATAAGTAGACCAAATTCTCAGGCGCGAACGGAAACAGGG
AAAATCCGATTAATTCATTGTCCTTGCTCAGTTGATCCCAAGCGAACATG
ATTGCCAGCCACATACCTATTTGATACATGTATGGTCACACATATAGCAA
GAGTATGGATCGACCGAGTATGGTTACCAATCCTGCTCGTGGTCAGCTGA
ACAGGGGAAATATGTTGCTTCCCTGTTGCCGTTCGCGCCTGAGGTATTGG
TATCGCGAGACGGGTTCGGCCGTCCCGTCCCGCGTCAGCCCGCTCATTCT
CCACACTCAGGATGAATCTGATTGGTTGGTGCTTACTTACGGGATTCCTC
CCGCTTTCCGCGACCGTCGATTTCTTCAATCAGCCAACCGCCATCGGGCC
AGTCCCGAGTTTATCGGGTCACGTAATTGCGTACCGATGGCATTCATTGC
CGAGAGTCCGCCGGCATAGGACCAGTAGTCCAATCTATCGGACGCGCGTG
TAATGGAAGTAAGTTATTTACGGTATCAAAACGTTTTTCGAGAAGTGTAC
CGTATAATATATAGGACTCTTCACATTGATACAGTAGTTCATGTTACGAA
AAGGAGGCATTTCGAGAGCTTTGCGTAGTCGCGACGGCATGAAGCGTTAG
CCGGTTGTAAAACGTGGACTGTTGCTGCGGCTGCTGGTGTGGCGATGTAC
GCCCGAGGACGACCAAATTCTACCATCAAAAGTGTTCCGATGCTTTTTTT
GAAAGAAAAACAATTCACACATGTTGTTCATACATTTTGTCTTTATACAT
ATAATGAAAAGGGGGATGCTTCGCGACGTTACGGAGGCGTTTACCAGTTC
GCCTCGCCTCCCAAACCCCGACATACTCACACACATATATAAATATATGA
ATACGAAAAAAAAAGACACGAAGTTTGAATCTCGGCGCTTTTGTGAACCC
ACTCCATTTCTTATGCTGGCTTGACGTGACGGCAAAACTTTCATCTAATG
TCTACTGCAGAATCGATACGTTTTGTCTTGACTCGAGCAAGCGACGTATC
TCTTGTCTGTCCGTCCGTCCGTCCGTCTATCTATGATATATCCCCGATCG
CAAGATGGAGCAGCAAGACGTGCCAATTGACCGTTTCAGACCCCGTGGCG
TTGCGGCACTCGCACGTGTGCCTCATTGTGATGAACCGAGAGCAGGGTGT
CAAGGATGAGATCCTTGGAGTTGCCAACTTTTCGCTGGCGGAGGCTACCT
GGTGAGTTGCGCCCGTGCCTGCCCCCCCCCGACTTTTTTTTTTTTTACCT
CATCTCATGCTTTCGACTTATTTCAGTTTTCGAAGACCGCACCGACGATA
CCTTTTATCAACAGATTTTTATCGACGTTCCATCGCTATTAGAGCCTTAG
AGCTCTACCGCTATCGATCACCGGGATGTGTCTCAAGACGTGCAAGCCCT
CCCTCTCTCCCCCCCCATCCACCTTTTTGTTCCAAGCGCAAACAAAAAAA
GAGGAAGTCAAGGCTTGGGCAGGCACACTTTTTCTCCTTTTTTTTGCTTC
TTCTTTTTCAATGCGATCTTGCAGTGTTTCTGGACTACCATAATACTATC
TTACGTATTTTGCTTGGAGGTGAAACAGCTATTTATCCTGTAGACGGGTA
CAAATCCAAACTACTATATATCAATACGAAGAAATGATCCTACAACTTCA
CTTGTTTACTACATTAGACTATACTATCAATTGAGTTGTACTATTTTTTT
TCTGGAAAAAAAATGTGCACAGGTCTCAGTTTTCCCTTCATTTGTGAAGC
GGAAACCCCCCACCCCTGGAAAGAAAATCACTTGATTTCAGTGTGGAAAC
ATGCGGATTTTCGCCCAAAGTGTGCGTTGAACCCCAGAGTTGAGCACCAT
TAATCGCGTTTGCTGCCCTCTGCTGTTGGGAGAGTTTAATTTTTAATTTT
TTGCATCCGATCTCCCATCCCGCATCCCCCTGGGAATAGAATAGATAATA
TTAATAGATGGAACATACCAAGTGCAGTATACCGCAATTTGATAATACCA
GACGAAAACGTCTACCGGTAAATTTCAAATGTAAATTTCAAATGTGTTTT
TTTCTTTTTTGACCGTGTGAGCAGGGTTAACAGCCAACGCCCCGCCCCAG
CCCCAGCCGCAACCGGTCGGCCGGCGGCCCGCCAGAGCTCGATAGCCTCG
TCGCGCAGCGGCTTGCAGTCCTCCCCAGCGCTCGCGCGGGGTCCAGGTCC
AGTCGCCCCTGAGAATCGCACTCTCTTCGCAACCGTCGGAGACATCTATT
GCGACGCCGAAGGCGACGCCGACGATTTTGATGACACTGGCATTGACTTC
GATGGCGTTGACCTGGAGGAGGAGGATGCCGACGTGGGTGCGGCCAGGGG
ATCGGTGGAAGAAATCCCCGCGTTTGACCTCCTCTTGGTCAGAAACGGCC
TCCCCAGGGGGCGTATCAGAGGCCGGTGCTCGCTGCTTTTGGGCCCCGAA
AAAGATGGAGGCGGCGGCGAATTTTTGGGCGGGGAGCGCGGGTTTCGACG
GCGTGGGCACCGGGATGACATCGGTTGCTGGTGGGCAGGGAGACGGGTTT
GGAGGGGGGGGCGAAGACGTACCGAATCCCAGACTGGTGCCGTCCGGTCG
CAGCAAGGCCGGTCTGAGACGCCTCTTTCCCGGGCTCCTGCGAGTTCTCC
GATACCTCGGCTTGCGTGGCTCCTCTGCAAAAGAGGAGGGGGTGTGAATT
TTAGGCACAAGGCGGGTGTGCAGTGTACATATTAATAGTATAGTATAGTA
TAGTATAGTACGGTATTCTTATTGATGACGTTGTTGCGCGCTCCTTTTTT
CGTGAGGTGGGCATCGATCGTCTATCGTCGGGCGAATTTTTTAGACTCCG
GGACAGGGTTTTGGGAGTTTAATAACGCGGGCGAAGCCTGCGTAGCCCGC
GATTATTGAAACCTAGGTTCTGAGGGTTGATGGTTGGTTGTCTTTTATTT
TGTG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10054:5288..11341-

>mRNA_A-nodosum_M_contig10054.2.1 ID=mRNA_A-nodosum_M_contig10054.2.1|Name=mRNA_A-nodosum_M_contig10054.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=903bp|location=Sequence derived from alignment at A-nodosum_M_contig10054:5288..11341- (Ascophyllum nodosum dioecious)
ATGTTCTCTTCTGATCCGAAGCACCTTATCAAGACCTCGTCGGCCAAGGG
AAAGCTTCCTAAGACGGAGATTCGAAGGAGGACCCTAGACCCTAGATGGA
GCAGCAAGACGTGCCAATTGACCGTTTCAGACCCCGTGGCGTTGCGGCAC
TCGCACGTGTGCCTCATTGTGATGAACCGAGAGCAGGGTGTCAAGGATGA
GATCCTTGGAGTTGCCAACTTTTCGCTGGCGGAGGCTACCTGGGTTAACA
GCCAACGCCCCGCCCCAGCCCCAGCCGCAACCGGTCGGCCGGCGGCCCGC
CAGAGCTCGATAGCCTCGTCGCGCAGCGGCTTGCAGTCCTCCCCAGCGCT
CGCGCGGGGTCCAGGTCCAGTCGCCCCTGAGAATCGCACTCTCTTCGCAA
CCGTCGGAGACATCTATTGCGACGCCGAAGGCGACGCCGACGATTTTGAT
GACACTGGCATTGACTTCGATGGCGTTGACCTGGAGGAGGAGGATGCCGA
CGTGGGTGCGGCCAGGGGATCGGTGGAAGAAATCCCCGCGTTTGACCTCC
TCTTGGTCAGAAACGGCCTCCCCAGGGGGCGTATCAGAGGCCGGTGCTCG
CTGCTTTTGGGCCCCGAAAAAGATGGAGGCGGCGGCGAATTTTTGGGCGG
GGAGCGCGGGTTTCGACGGCGTGGGCACCGGGATGACATCGGTTGCTGGT
GGGCAGGGAGACGGGTTTGGAGGGGGGGGCGAAGACGTACCGAATCCCAG
ACTGGTGCCGTCCGGTCGCAGCAAGGCCGGTCTGAGACGCCTCTTTCCCG
GGCTCCTGCGAGTTCTCCGATACCTCGGCTTGCGTGGCTCCTCTGCAAAA
GAGGAGGGGGTGTGAATTTTAGGCACAAGGCGGGTGTGCAGTGTACATAT
TAA
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