Homology
BLAST of mRNA_A-nodosum_M_contig10053.1.1 vs. uniprot
Match:
D7G0F6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0F6_ECTSI)
HSP 1 Score: 112 bits (279), Expect = 6.470e-31
Identity = 47/50 (94.00%), Postives = 49/50 (98.00%), Query Frame = 1
Query: 1 DFEKNVVVSNFERRGWTKTEGDDWNVYWANAYSIKQLFNPETGFRLGDDQ 150
DFEKNVVVSNFERRGWTKT+GDDWNVYWAN YS+KQLFNPETGFRLGDDQ
Sbjct: 19 DFEKNVVVSNFERRGWTKTDGDDWNVYWANVYSVKQLFNPETGFRLGDDQ 68
BLAST of mRNA_A-nodosum_M_contig10053.1.1 vs. uniprot
Match:
A0A6H5J8A0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8A0_9PHAE)
HSP 1 Score: 112 bits (279), Expect = 8.530e-28
Identity = 47/50 (94.00%), Postives = 49/50 (98.00%), Query Frame = 1
Query: 1 DFEKNVVVSNFERRGWTKTEGDDWNVYWANAYSIKQLFNPETGFRLGDDQ 150
DFEKNVVVSNFERRGWTKT+GDDWNVYWAN YS+KQLFNPETGFRLGDDQ
Sbjct: 19 DFEKNVVVSNFERRGWTKTDGDDWNVYWANVYSVKQLFNPETGFRLGDDQ 68
BLAST of mRNA_A-nodosum_M_contig10053.1.1 vs. uniprot
Match:
A0A835Z6J2_9STRA (Tubulin-tyrosine ligase family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6J2_9STRA)
HSP 1 Score: 102 bits (255), Expect = 1.350e-24
Identity = 43/50 (86.00%), Postives = 46/50 (92.00%), Query Frame = 1
Query: 1 DFEKNVVVSNFERRGWTKTEGDDWNVYWANAYSIKQLFNPETGFRLGDDQ 150
DFEKNVVVSNF RRGWTKTEGDDWN+YWAN Y++KQLFNPETG RL DDQ
Sbjct: 14 DFEKNVVVSNFARRGWTKTEGDDWNIYWANVYNVKQLFNPETGQRLRDDQ 63
BLAST of mRNA_A-nodosum_M_contig10053.1.1 vs. uniprot
Match:
A0A6A3WFX3_9STRA (Uncharacterized protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3WFX3_9STRA)
HSP 1 Score: 87.4 bits (215), Expect = 4.660e-20
Identity = 37/50 (74.00%), Postives = 41/50 (82.00%), Query Frame = 1
Query: 1 DFEKNVVVSNFERRGWTKTEGDDWNVYWANAYSIKQLFNPETGFRLGDDQ 150
D EKNVVV NFERRGWTKTEGDDWN++WAN +IK +FNPE G RL D Q
Sbjct: 19 DSEKNVVVWNFERRGWTKTEGDDWNIFWANKTTIKNMFNPENGVRLVDGQ 68
BLAST of mRNA_A-nodosum_M_contig10053.1.1 vs. uniprot
Match:
A0A2P4XLN3_9STRA (Tubulin-tyrosine ligase family n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XLN3_9STRA)
HSP 1 Score: 90.5 bits (223), Expect = 5.950e-20
Identity = 39/50 (78.00%), Postives = 42/50 (84.00%), Query Frame = 1
Query: 1 DFEKNVVVSNFERRGWTKTEGDDWNVYWANAYSIKQLFNPETGFRLGDDQ 150
D EKNVVV NFERRGWTKTEGDDWN+YWA+ SIK +FNPETG RL D Q
Sbjct: 164 DAEKNVVVWNFERRGWTKTEGDDWNIYWASKTSIKNMFNPETGIRLVDGQ 213
BLAST of mRNA_A-nodosum_M_contig10053.1.1 vs. uniprot
Match:
G5A1Y3_PHYSP (Uncharacterized protein n=14 Tax=Phytophthora TaxID=4783 RepID=G5A1Y3_PHYSP)
HSP 1 Score: 89.0 bits (219), Expect = 1.770e-19
Identity = 38/50 (76.00%), Postives = 41/50 (82.00%), Query Frame = 1
Query: 1 DFEKNVVVSNFERRGWTKTEGDDWNVYWANAYSIKQLFNPETGFRLGDDQ 150
D EKNVVV NFERRGWTKTEGDDWN+YWAN +IK +FNPE G RL D Q
Sbjct: 47 DSEKNVVVWNFERRGWTKTEGDDWNIYWANKTAIKNMFNPENGVRLVDGQ 96
BLAST of mRNA_A-nodosum_M_contig10053.1.1 vs. uniprot
Match:
A0A7S3MKX9_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Favella ehrenbergii TaxID=182087 RepID=A0A7S3MKX9_9SPIT)
HSP 1 Score: 84.3 bits (207), Expect = 2.130e-19
Identity = 33/51 (64.71%), Postives = 43/51 (84.31%), Query Frame = 1
Query: 1 DFEKNVVVSNFERRGWTKTEGD-DWNVYWANAYSIKQLFNPETGFRLGDDQ 150
DF+K+V+ NFE+RGW K GD DWN+YWAN +++KQ+FNPETGFRLG+ Q
Sbjct: 12 DFDKSVLTLNFEKRGWVKATGDEDWNIYWANPWTVKQIFNPETGFRLGETQ 62
BLAST of mRNA_A-nodosum_M_contig10053.1.1 vs. uniprot
Match:
A0A8J5M8E9_9STRA (Ion_trans domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5M8E9_9STRA)
HSP 1 Score: 87.8 bits (216), Expect = 5.420e-19
Identity = 37/50 (74.00%), Postives = 42/50 (84.00%), Query Frame = 1
Query: 1 DFEKNVVVSNFERRGWTKTEGDDWNVYWANAYSIKQLFNPETGFRLGDDQ 150
D EKNVVV NF+RRGWTKTEGDDWN+YWA+ +IK +FNPETG RL D Q
Sbjct: 29 DAEKNVVVWNFDRRGWTKTEGDDWNIYWASKTTIKNIFNPETGVRLVDGQ 78
BLAST of mRNA_A-nodosum_M_contig10053.1.1 vs. uniprot
Match:
A0A418FU72_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418FU72_9STRA)
HSP 1 Score: 84.3 bits (207), Expect = 5.700e-19
Identity = 36/50 (72.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query: 1 DFEKNVVVSNFERRGWTKTEGDDWNVYWANAYSIKQLFNPETGFRLGDDQ 150
D EK+VVV NFERRGW KTEG DWN+YWAN SIK +FNPE G RL D Q
Sbjct: 10 DSEKHVVVWNFERRGWQKTEGSDWNIYWANKQSIKSMFNPENGVRLTDGQ 59
BLAST of mRNA_A-nodosum_M_contig10053.1.1 vs. uniprot
Match:
H3HCR5_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HCR5_PHYRM)
HSP 1 Score: 87.4 bits (215), Expect = 7.400e-19
Identity = 37/48 (77.08%), Postives = 40/48 (83.33%), Query Frame = 1
Query: 7 EKNVVVSNFERRGWTKTEGDDWNVYWANAYSIKQLFNPETGFRLGDDQ 150
EKNVVV NFERRGWTKTEGDDWN+YWAN +IK +FNPE G RL D Q
Sbjct: 311 EKNVVVWNFERRGWTKTEGDDWNIYWANKTTIKNMFNPENGIRLVDGQ 358
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10053.1.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 25
0 1 Expect = 6.47e-31 / Id = 94.00 Expect = 8.53e-28 / Id = 94.00 Expect = 1.35e-24 / Id = 86.00 Expect = 4.66e-20 / Id = 74.00 Expect = 5.95e-20 / Id = 78.00 Expect = 1.77e-19 / Id = 76.00 Expect = 2.13e-19 / Id = 64.71 Expect = 5.42e-19 / Id = 74.00 Expect = 5.70e-19 / Id = 72.00 Expect = 7.40e-19 / Id = 77.08 Sequence D7G0F6_ECTSI A0A6H5J8A0_9PHAE A0A835Z6J2_9STRA A0A6A3WFX3_9STRA A0A2P4XLN3_9STRA G5A1Y3_PHYSP A0A7S3MKX9_9SPIT A0A8J5M8E9_9STRA A0A418FU72_9STRA H3HCR5_PHYRM Pages
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 0 Seed ortholog 2880.D7G0F6 PFAMs Myb_DNA-binding,TTL Model size 153 Max annot lvl 2759|Eukaryota KEGG ko ko:K16599,ko:K16603 Hectar predicted targeting category no signal peptide or anchor GOs GO:0003674,GO:0003824,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0018095,GO:0018193,GO:0018200,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0070739,GO:0070740,GO:0071704,GO:0140096,GO:1901564 Exons 2 Evalue 1.06e-31 EggNOG OGs KOG2157@1|root,KOG2157@2759|Eukaryota Description protein polyglycylation Cds size 153 COG category S BRITE ko00000,ko01000,ko04812
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680866363.1750932-CDS-A-nodosum_M_contig10053:15604..15640 1680866363.1750932-CDS-A-nodosum_M_contig10053:15604..15640 Ascophyllum nodosum dioecious CDS A-nodosum_M_contig10053 15605..15640 + 1680866363.1896544-CDS-A-nodosum_M_contig10053:16328..16445 1680866363.1896544-CDS-A-nodosum_M_contig10053:16328..16445 Ascophyllum nodosum dioecious CDS A-nodosum_M_contig10053 16329..16445 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig10053.1.1
>prot_A-nodosum_M_contig10053.1.1 ID=prot_A-nodosum_M_contig10053.1.1|Name=mRNA_A-nodosum_M_contig10053.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=51bp
DFEKNVVVSNFERRGWTKTEGDDWNVYWANAYSIKQLFNPETGFRLGDDQ back to top mRNA from alignment at A-nodosum_M_contig10053:15605..16445+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10053.1.1 ID=mRNA_A-nodosum_M_contig10053.1.1|Name=mRNA_A-nodosum_M_contig10053.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=841bp|location=Sequence derived from alignment at A-nodosum_M_contig10053:15605..16445+ (Ascophyllum nodosum dioecious)GATTTCGAAAAAAACGTGGTCGTGTCCAACTTCGAG GTGAGAGGAAGATA
AAAAAAAATGCCACAAAAGTACTACAAAGCCCAACAATGTGAGAGCTTGG
GCCCTCGAAACTCGACTGACGTATAACGTTCGGTACCTGGTAAAATACAG
GAAGAAAAATACGCTCTCGAGCTTAGGGAGGAGAGTGTTGAACCTGCACC
CCGTTGTTAGGTTGTTTTGTTTTGATTTGTTTTTTTTCTATATATTTATG
TTTCCCCCCTCGATAGTTCGGGTTTGTCCATGTTTTGTACTGGAAAGGTT
CTCACTACGAACTTATGCTACGAGACGCTTGCCTTCTGTTGCGGCCCGTT
CCGCCACGTCCCGCATTCCGGCCCGTCCCATTTTCCATTCCATGCTCTCA
TGCATGTCTTGAAACGCCCCTCCGACAGTGCCCGCTCCGCACCGTCCCCT
CTGCCCCTTCGTCTCACGTTGTACTGTACGTTCGTTCTGTCCCACGCGCC
GTTCCGTATCCCAGCGTGCATCCTTCCTCTCGGCCGCTTTATGCCCTCCG
AGACATACGCATCGCCCGCGTTCCCCTTACATCGCCCCATATCTTCCATT
TCGTTCCATGACGTACCATCTGGCCCCGTGTCCCATCTCGTTCTGTCTCA
TCTATTTATGTCCCATCTCTTTCTGTCCCATCTCTTTCTGTCCCATCTCG
TTCCATTATCCCTTTTTCTTCTAGAGGCGAGGGTGGACCAAGACCGAGGG
GGACGACTGGAACGTGTACTGGGCCAACGCGTACAGCATCAAGCAGCTCT
TCAACCCGGAGACGGGGTTCCGGCTGGGAGACGATCAGTGA back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig10053:15605..16445+
>mRNA_A-nodosum_M_contig10053.1.1 ID=mRNA_A-nodosum_M_contig10053.1.1|Name=mRNA_A-nodosum_M_contig10053.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=153bp|location=Sequence derived from alignment at A-nodosum_M_contig10053:15605..16445+ (Ascophyllum nodosum dioecious) back to top