mRNA_A-nodosum_M_contig10053.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10053.1.1
Unique NamemRNA_A-nodosum_M_contig10053.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig10053.1.1 vs. uniprot
Match: D7G0F6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0F6_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 6.470e-31
Identity = 47/50 (94.00%), Postives = 49/50 (98.00%), Query Frame = 1 
Query:    1 DFEKNVVVSNFERRGWTKTEGDDWNVYWANAYSIKQLFNPETGFRLGDDQ 150
            DFEKNVVVSNFERRGWTKT+GDDWNVYWAN YS+KQLFNPETGFRLGDDQ
Sbjct:   19 DFEKNVVVSNFERRGWTKTDGDDWNVYWANVYSVKQLFNPETGFRLGDDQ 68
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BLAST of mRNA_A-nodosum_M_contig10053.1.1 vs. uniprot
Match: A0A6H5J8A0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8A0_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 8.530e-28
Identity = 47/50 (94.00%), Postives = 49/50 (98.00%), Query Frame = 1 
Query:    1 DFEKNVVVSNFERRGWTKTEGDDWNVYWANAYSIKQLFNPETGFRLGDDQ 150
            DFEKNVVVSNFERRGWTKT+GDDWNVYWAN YS+KQLFNPETGFRLGDDQ
Sbjct:   19 DFEKNVVVSNFERRGWTKTDGDDWNVYWANVYSVKQLFNPETGFRLGDDQ 68
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BLAST of mRNA_A-nodosum_M_contig10053.1.1 vs. uniprot
Match: A0A835Z6J2_9STRA (Tubulin-tyrosine ligase family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6J2_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.350e-24
Identity = 43/50 (86.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    1 DFEKNVVVSNFERRGWTKTEGDDWNVYWANAYSIKQLFNPETGFRLGDDQ 150
            DFEKNVVVSNF RRGWTKTEGDDWN+YWAN Y++KQLFNPETG RL DDQ
Sbjct:   14 DFEKNVVVSNFARRGWTKTEGDDWNIYWANVYNVKQLFNPETGQRLRDDQ 63
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BLAST of mRNA_A-nodosum_M_contig10053.1.1 vs. uniprot
Match: A0A6A3WFX3_9STRA (Uncharacterized protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3WFX3_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 4.660e-20
Identity = 37/50 (74.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    1 DFEKNVVVSNFERRGWTKTEGDDWNVYWANAYSIKQLFNPETGFRLGDDQ 150
            D EKNVVV NFERRGWTKTEGDDWN++WAN  +IK +FNPE G RL D Q
Sbjct:   19 DSEKNVVVWNFERRGWTKTEGDDWNIFWANKTTIKNMFNPENGVRLVDGQ 68
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BLAST of mRNA_A-nodosum_M_contig10053.1.1 vs. uniprot
Match: A0A2P4XLN3_9STRA (Tubulin-tyrosine ligase family n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XLN3_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 5.950e-20
Identity = 39/50 (78.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    1 DFEKNVVVSNFERRGWTKTEGDDWNVYWANAYSIKQLFNPETGFRLGDDQ 150
            D EKNVVV NFERRGWTKTEGDDWN+YWA+  SIK +FNPETG RL D Q
Sbjct:  164 DAEKNVVVWNFERRGWTKTEGDDWNIYWASKTSIKNMFNPETGIRLVDGQ 213
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BLAST of mRNA_A-nodosum_M_contig10053.1.1 vs. uniprot
Match: G5A1Y3_PHYSP (Uncharacterized protein n=14 Tax=Phytophthora TaxID=4783 RepID=G5A1Y3_PHYSP)

HSP 1 Score: 89.0 bits (219), Expect = 1.770e-19
Identity = 38/50 (76.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    1 DFEKNVVVSNFERRGWTKTEGDDWNVYWANAYSIKQLFNPETGFRLGDDQ 150
            D EKNVVV NFERRGWTKTEGDDWN+YWAN  +IK +FNPE G RL D Q
Sbjct:   47 DSEKNVVVWNFERRGWTKTEGDDWNIYWANKTAIKNMFNPENGVRLVDGQ 96
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BLAST of mRNA_A-nodosum_M_contig10053.1.1 vs. uniprot
Match: A0A7S3MKX9_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Favella ehrenbergii TaxID=182087 RepID=A0A7S3MKX9_9SPIT)

HSP 1 Score: 84.3 bits (207), Expect = 2.130e-19
Identity = 33/51 (64.71%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:    1 DFEKNVVVSNFERRGWTKTEGD-DWNVYWANAYSIKQLFNPETGFRLGDDQ 150
            DF+K+V+  NFE+RGW K  GD DWN+YWAN +++KQ+FNPETGFRLG+ Q
Sbjct:   12 DFDKSVLTLNFEKRGWVKATGDEDWNIYWANPWTVKQIFNPETGFRLGETQ 62
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BLAST of mRNA_A-nodosum_M_contig10053.1.1 vs. uniprot
Match: A0A8J5M8E9_9STRA (Ion_trans domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5M8E9_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 5.420e-19
Identity = 37/50 (74.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    1 DFEKNVVVSNFERRGWTKTEGDDWNVYWANAYSIKQLFNPETGFRLGDDQ 150
            D EKNVVV NF+RRGWTKTEGDDWN+YWA+  +IK +FNPETG RL D Q
Sbjct:   29 DAEKNVVVWNFDRRGWTKTEGDDWNIYWASKTTIKNIFNPETGVRLVDGQ 78
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BLAST of mRNA_A-nodosum_M_contig10053.1.1 vs. uniprot
Match: A0A418FU72_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418FU72_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 5.700e-19
Identity = 36/50 (72.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 DFEKNVVVSNFERRGWTKTEGDDWNVYWANAYSIKQLFNPETGFRLGDDQ 150
            D EK+VVV NFERRGW KTEG DWN+YWAN  SIK +FNPE G RL D Q
Sbjct:   10 DSEKHVVVWNFERRGWQKTEGSDWNIYWANKQSIKSMFNPENGVRLTDGQ 59
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BLAST of mRNA_A-nodosum_M_contig10053.1.1 vs. uniprot
Match: H3HCR5_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HCR5_PHYRM)

HSP 1 Score: 87.4 bits (215), Expect = 7.400e-19
Identity = 37/48 (77.08%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:    7 EKNVVVSNFERRGWTKTEGDDWNVYWANAYSIKQLFNPETGFRLGDDQ 150
            EKNVVV NFERRGWTKTEGDDWN+YWAN  +IK +FNPE G RL D Q
Sbjct:  311 EKNVVVWNFERRGWTKTEGDDWNIYWANKTTIKNMFNPENGIRLVDGQ 358
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10053.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0F6_ECTSI6.470e-3194.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J8A0_9PHAE8.530e-2894.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z6J2_9STRA1.350e-2486.00Tubulin-tyrosine ligase family-domain-containing p... [more]
A0A6A3WFX3_9STRA4.660e-2074.00Uncharacterized protein n=3 Tax=Phytophthora fraga... [more]
A0A2P4XLN3_9STRA5.950e-2078.00Tubulin-tyrosine ligase family n=1 Tax=Phytophthor... [more]
G5A1Y3_PHYSP1.770e-1976.00Uncharacterized protein n=14 Tax=Phytophthora TaxI... [more]
A0A7S3MKX9_9SPIT2.130e-1964.71Hypothetical protein (Fragment) n=1 Tax=Favella eh... [more]
A0A8J5M8E9_9STRA5.420e-1974.00Ion_trans domain-containing protein n=1 Tax=Phytop... [more]
A0A418FU72_9STRA5.700e-1972.00Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
H3HCR5_PHYRM7.400e-1977.08Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10053contigA-nodosum_M_contig10053:15605..16445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G0F6
PFAMsMyb_DNA-binding,TTL
Model size153
Max annot lvl2759|Eukaryota
KEGG koko:K16599,ko:K16603
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0018095,GO:0018193,GO:0018200,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0070739,GO:0070740,GO:0071704,GO:0140096,GO:1901564
Exons2
Evalue1.06e-31
EggNOG OGsKOG2157@1|root,KOG2157@2759|Eukaryota
Descriptionprotein polyglycylation
Cds size153
COG categoryS
BRITEko00000,ko01000,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866363.1750932-CDS-A-nodosum_M_contig10053:15604..156401680866363.1750932-CDS-A-nodosum_M_contig10053:15604..15640Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10053 15605..15640 +
1680866363.1896544-CDS-A-nodosum_M_contig10053:16328..164451680866363.1896544-CDS-A-nodosum_M_contig10053:16328..16445Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10053 16329..16445 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10053.1.1prot_A-nodosum_M_contig10053.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10053 15605..16445 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10053.1.1

>prot_A-nodosum_M_contig10053.1.1 ID=prot_A-nodosum_M_contig10053.1.1|Name=mRNA_A-nodosum_M_contig10053.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=51bp
DFEKNVVVSNFERRGWTKTEGDDWNVYWANAYSIKQLFNPETGFRLGDDQ
*
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mRNA from alignment at A-nodosum_M_contig10053:15605..16445+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10053.1.1 ID=mRNA_A-nodosum_M_contig10053.1.1|Name=mRNA_A-nodosum_M_contig10053.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=841bp|location=Sequence derived from alignment at A-nodosum_M_contig10053:15605..16445+ (Ascophyllum nodosum dioecious)
GATTTCGAAAAAAACGTGGTCGTGTCCAACTTCGAGGTGAGAGGAAGATA
AAAAAAAATGCCACAAAAGTACTACAAAGCCCAACAATGTGAGAGCTTGG
GCCCTCGAAACTCGACTGACGTATAACGTTCGGTACCTGGTAAAATACAG
GAAGAAAAATACGCTCTCGAGCTTAGGGAGGAGAGTGTTGAACCTGCACC
CCGTTGTTAGGTTGTTTTGTTTTGATTTGTTTTTTTTCTATATATTTATG
TTTCCCCCCTCGATAGTTCGGGTTTGTCCATGTTTTGTACTGGAAAGGTT
CTCACTACGAACTTATGCTACGAGACGCTTGCCTTCTGTTGCGGCCCGTT
CCGCCACGTCCCGCATTCCGGCCCGTCCCATTTTCCATTCCATGCTCTCA
TGCATGTCTTGAAACGCCCCTCCGACAGTGCCCGCTCCGCACCGTCCCCT
CTGCCCCTTCGTCTCACGTTGTACTGTACGTTCGTTCTGTCCCACGCGCC
GTTCCGTATCCCAGCGTGCATCCTTCCTCTCGGCCGCTTTATGCCCTCCG
AGACATACGCATCGCCCGCGTTCCCCTTACATCGCCCCATATCTTCCATT
TCGTTCCATGACGTACCATCTGGCCCCGTGTCCCATCTCGTTCTGTCTCA
TCTATTTATGTCCCATCTCTTTCTGTCCCATCTCTTTCTGTCCCATCTCG
TTCCATTATCCCTTTTTCTTCTAGAGGCGAGGGTGGACCAAGACCGAGGG
GGACGACTGGAACGTGTACTGGGCCAACGCGTACAGCATCAAGCAGCTCT
TCAACCCGGAGACGGGGTTCCGGCTGGGAGACGATCAGTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig10053:15605..16445+

>mRNA_A-nodosum_M_contig10053.1.1 ID=mRNA_A-nodosum_M_contig10053.1.1|Name=mRNA_A-nodosum_M_contig10053.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=153bp|location=Sequence derived from alignment at A-nodosum_M_contig10053:15605..16445+ (Ascophyllum nodosum dioecious)
GATTTCGAAAAAAACGTGGTCGTGTCCAACTTCGAGAGGCGAGGGTGGAC
CAAGACCGAGGGGGACGACTGGAACGTGTACTGGGCCAACGCGTACAGCA
TCAAGCAGCTCTTCAACCCGGAGACGGGGTTCCGGCTGGGAGACGATCAG
TGA
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