Homology
BLAST of mRNA_A-nodosum_M_contig10.171.1 vs. uniprot
Match:
A0A835YZB9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZB9_9STRA)
HSP 1 Score: 132 bits (331), Expect = 1.500e-36
Identity = 65/143 (45.45%), Postives = 88/143 (61.54%), Query Frame = 3
Query: 3 FTNRLKKAIANLRVHLHNGCLSDPDPCDVQLFFWAGRTADGVDRFRCARETSNTENYHKPVRDLLAGFGTSPRMAHSVLLLFNYRRNYRMAGKHRGLDPELQGWYAQWLLDDLQELTDGWFTIPLYSG*DSTKNYLDTGELTG 431
F+ + KA+ NLR H+ C+ D V ++ G+ R+RCAR T+ E YH P+R LLA + SPR+AHS+LL FN+RRN RMAGKH L E +Y+Q+ +++LQ+LT GWF PLY N+ DTGE TG
Sbjct: 6 FSKKCWKAVQNLRQHITGSCVGDA--AGVSPYYATHTDKAGLQRWRCARGTNKNERYHLPLRKLLAQYNLSPRLAHSLLLPFNHRRNVRMAGKHGDLPAEYTHFYSQYKIEELQDLTAGWFATPLYQSWHPVSNFADTGERTG 146
BLAST of mRNA_A-nodosum_M_contig10.171.1 vs. uniprot
Match:
D7G0J2_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0J2_ECTSI)
HSP 1 Score: 131 bits (330), Expect = 9.890e-33
Identity = 62/129 (48.06%), Postives = 86/129 (66.67%), Query Frame = 3
Query: 3 FTNRLKKAIANLRVHLHNGCLSDPDPCDVQLFFWAGRTADGVDRFRCARETSNTENYHKPVRDLLAGFGTSPRMAHSVLLLFNYRRNYRMAGKHRGLDPELQGWYAQWLLDDLQELTDGWFTI-PLYSG 386
FT+R+ KA LR H+ GCL DP+P V LF GRT DG++ R + T+ EN+H+ +R L+ + S MAH +LL NYRRN+RMAG HRG+DP+L G+Y+ W ++D+Q +T GW+ PLY G
Sbjct: 521 FTDRMHKATKLLRTHIEKGCLHDPNPDLVTLFEITGRTKDGLNLIRSIKGTNRIENFHQLLRLLMGSYHASALMAHFTMLLHNYRRNHRMAGLHRGMDPDLLGYYSHWEVEDIQAITKGWYDDEPLYPG 649
BLAST of mRNA_A-nodosum_M_contig10.171.1 vs. uniprot
Match:
A0A6H5JRJ6_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ6_9PHAE)
HSP 1 Score: 108 bits (269), Expect = 2.290e-24
Identity = 59/139 (42.45%), Postives = 84/139 (60.43%), Query Frame = 3
Query: 21 KAIANLRVHLHNGCLSDPDPCDVQLFFWAGRTADGVDRFRCARETSNTENYHKPVRDLLAGFGTSPRMAHSVLLLFNYRRNYRMAGKHRGLDPELQGWYAQWLLDDLQELTDGWFTI-PLYSG*DSTKNYLDTGELTGL 434
KA+ LR H+ N CLSDPD + ++F G+ G+ +RC R T++ E YH+ +R LLA + SP +A SVLL FNYR N RM K+RGL L G Y Q+L++ +Q T W + P++ + + +DTGE GL
Sbjct: 614 KAVRQLRKHIENDCLSDPD--GMAMYFAIGKNKHGLTDYRCVRGTNDVEGYHRYLRTLLASYCASPSLAQSVLLEFNYRWNLRMMIKNRGLPAALGGHYNQYLVESIQRDTADWDSSHPVFPEWPAAIDSVDTGERFGL 750
BLAST of mRNA_A-nodosum_M_contig10.171.1 vs. uniprot
Match:
A0A6H5JD89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD89_9PHAE)
HSP 1 Score: 95.9 bits (237), Expect = 3.580e-20
Identity = 59/140 (42.14%), Postives = 83/140 (59.29%), Query Frame = 3
Query: 21 KAIANLRVHLHNGCLSDPDPCDVQLFFWAGRTADGV-DRFRCARETSNTENYHKPVRDLLAGFGTSPRMAHSVLLLFNYRRNYRMAGKHRGLDPELQGWYAQWLLDDLQELTDGWFTIPLYSG*DSTKNYLDTGELTGLV 437
+AI LRVH+ N C SD + L+F AG+ A+ + FRC R T++ E YH +R LL + SPR+AH +LL +NYR N R + K+RGLD + G+Y Q +L+ +Q +T + YS T Y DTGE +G V
Sbjct: 244 EAIKRLRVHIMNDCCSDSP--NEALYFEAGKDAETLCPLFRCIRGTNDLEGYHLHMR-LLVAWCISPRLAHLLLLEYNYRWNLRQSMKNRGLDEAVGGFYDQPMLEAIQRMTSKLYGKAKYSQWLPTSAYGDTGERSGFV 380
BLAST of mRNA_A-nodosum_M_contig10.171.1 vs. uniprot
Match:
A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE)
HSP 1 Score: 95.9 bits (237), Expect = 4.640e-20
Identity = 59/140 (42.14%), Postives = 83/140 (59.29%), Query Frame = 3
Query: 21 KAIANLRVHLHNGCLSDPDPCDVQLFFWAGRTADGV-DRFRCARETSNTENYHKPVRDLLAGFGTSPRMAHSVLLLFNYRRNYRMAGKHRGLDPELQGWYAQWLLDDLQELTDGWFTIPLYSG*DSTKNYLDTGELTGLV 437
+AI LRVH+ N C SD + L+F AG+ A+ + FRC R T++ E YH +R LL + SPR+AH +LL +NYR N R + K+RGLD + G+Y Q +L+ +Q +T + YS T Y DTGE +G V
Sbjct: 817 EAIKRLRVHIMNDCCSDSP--NEALYFEAGKDAETLCPLFRCIRGTNDLEGYHLHMR-LLVAWCISPRLAHLLLLEYNYRWNLRQSMKNRGLDEAVGGFYDQPMLEAIQRMTSKLYGKAKYSQWLPTSAYGDTGERSGFV 953
BLAST of mRNA_A-nodosum_M_contig10.171.1 vs. uniprot
Match:
A0A6H5KEU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEU8_9PHAE)
HSP 1 Score: 94.4 bits (233), Expect = 1.460e-19
Identity = 58/140 (41.43%), Postives = 83/140 (59.29%), Query Frame = 3
Query: 21 KAIANLRVHLHNGCLSDPDPCDVQLFFWAGRTADGV-DRFRCARETSNTENYHKPVRDLLAGFGTSPRMAHSVLLLFNYRRNYRMAGKHRGLDPELQGWYAQWLLDDLQELTDGWFTIPLYSG*DSTKNYLDTGELTGLV 437
+AI LRVH+ N C SD + L+F AG+ A+ + FRC R T++ E +H +R LL + SPR+AH +LL +NYR N R + K+RGLD + G+Y Q +L+ +Q +T + YS T Y DTGE +G V
Sbjct: 419 EAIKRLRVHIMNDCCSDAP--NEALYFEAGKDAETLCPLFRCIRGTNDLEGFHLHMR-LLVAWCISPRLAHLLLLEYNYRWNLRQSMKNRGLDEAVGGFYDQPILEAIQRMTSKLYGKAKYSQWLPTSAYGDTGERSGFV 555
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10.171.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 6
0 1 Expect = 1.50e-36 / Id = 45.45 Expect = 9.89e-33 / Id = 48.06 Expect = 2.29e-24 / Id = 42.45 Expect = 3.58e-20 / Id = 42.14 Expect = 4.64e-20 / Id = 42.14 Expect = 1.46e-19 / Id = 41.43 Sequence A0A835YZB9_9STRA D7G0J2_ECTSI A0A6H5JRJ6_9PHAE A0A6H5JD89_9PHAE A0A6H5JET4_9PHAE A0A6H5KEU8_9PHAE back to top
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680866347.7096179-UTR-A-nodosum_M_contig10:1709571..1709613 1680866347.7096179-UTR-A-nodosum_M_contig10:1709571..1709613 Ascophyllum nodosum dioecious UTR A-nodosum_M_contig10 1709572..1709613 - 1680866347.746671-UTR-A-nodosum_M_contig10:1710277..1710331 1680866347.746671-UTR-A-nodosum_M_contig10:1710277..1710331 Ascophyllum nodosum dioecious UTR A-nodosum_M_contig10 1710278..1710331 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680866347.7224615-CDS-A-nodosum_M_contig10:1709613..1709763 1680866347.7224615-CDS-A-nodosum_M_contig10:1709613..1709763 Ascophyllum nodosum dioecious CDS A-nodosum_M_contig10 1709614..1709763 - 1680866347.7326684-CDS-A-nodosum_M_contig10:1710055..1710277 1680866347.7326684-CDS-A-nodosum_M_contig10:1710055..1710277 Ascophyllum nodosum dioecious CDS A-nodosum_M_contig10 1710056..1710277 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig10.171.1
>prot_A-nodosum_M_contig10.171.1 ID=prot_A-nodosum_M_contig10.171.1|Name=mRNA_A-nodosum_M_contig10.171.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=124bp
MVVSAIPILATSSCSSGRVARRTGWTDSAVRGKPATRRITTNPFAIFLPA back to top mRNA from alignment at A-nodosum_M_contig10:1709572..1710331-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10.171.1 ID=mRNA_A-nodosum_M_contig10.171.1|Name=mRNA_A-nodosum_M_contig10.171.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=760bp|location=Sequence derived from alignment at A-nodosum_M_contig10:1709572..1710331- (Ascophyllum nodosum dioecious)TCTTCACAAATCGTTTAAAGAAGGCCATAGCGAACCTGCGGGTCCATCTT
CATA ATGGTTGTCTCAGCGATCCCGATCCTTGCGACGTCCAGTTGTTCTT
CTGGGCGGGTCGCACGGCGGACGGGGTGGACAGATTCCGCTGTGCGCGGG
AAACCAGCAACACGGAGAATTACCACAAACCCGTTCGCGATCTTCTTGCC
GGCTTCGGAACCTCCCCGCGTATGGCCCATTCTGTTCTGCTTCTCTTCAA
CTACAGGCGCAACTATCGTATGGCAG GTGGGTTGGATTCAGCTCGATAGT
GTAGTCGTAACGTTGTGTTACACATTAGGCGATACATTGGACGATGCCTC
TTACATAGAACTCGGGAATCGAGATATTATGTTTGTGGCTATATAGCCGT
ATCTGCCTATCGTGAAGTGTGGGGTAGGGTTTGCCCTTGCGGGCGCGCGC
TGGAGATAGGTACGTCTTTGCCCTGATGTCGCTATTGTTACCTAGTTGTG
GGGGCTCTGGCCGTTGTAAGCACTCGCACCGTTCGTCTTTGATGCTAACG
TCGTTCATTTACTTCCAGGCAAGCACAGGGGTTTGGACCCTGAGTTGCAA
GGGTGGTACGCGCAGTGGCTGCTGGACGATTTGCAGGAGCTTACGGACGG
GTGGTTCACGATCCCCCTCTATTCGGGGTAGGATTCAACCAAAAATTACC
TTGATACCGGGGAACTGA CCGGTCTCGTGACAGCACGGAGTTCAAGCGAC
GCTCGCGTGG back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig10:1709572..1710331-
>mRNA_A-nodosum_M_contig10.171.1 ID=mRNA_A-nodosum_M_contig10.171.1|Name=mRNA_A-nodosum_M_contig10.171.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at A-nodosum_M_contig10:1709572..1710331- (Ascophyllum nodosum dioecious) back to top