mRNA_A-nodosum_M_contig10.171.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10.171.1
Unique NamemRNA_A-nodosum_M_contig10.171.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig10.171.1 vs. uniprot
Match: A0A835YZB9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZB9_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.500e-36
Identity = 65/143 (45.45%), Postives = 88/143 (61.54%), Query Frame = 3
Query:    3 FTNRLKKAIANLRVHLHNGCLSDPDPCDVQLFFWAGRTADGVDRFRCARETSNTENYHKPVRDLLAGFGTSPRMAHSVLLLFNYRRNYRMAGKHRGLDPELQGWYAQWLLDDLQELTDGWFTIPLYSG*DSTKNYLDTGELTG 431
            F+ +  KA+ NLR H+   C+ D     V  ++       G+ R+RCAR T+  E YH P+R LLA +  SPR+AHS+LL FN+RRN RMAGKH  L  E   +Y+Q+ +++LQ+LT GWF  PLY       N+ DTGE TG
Sbjct:    6 FSKKCWKAVQNLRQHITGSCVGDA--AGVSPYYATHTDKAGLQRWRCARGTNKNERYHLPLRKLLAQYNLSPRLAHSLLLPFNHRRNVRMAGKHGDLPAEYTHFYSQYKIEELQDLTAGWFATPLYQSWHPVSNFADTGERTG 146          
BLAST of mRNA_A-nodosum_M_contig10.171.1 vs. uniprot
Match: D7G0J2_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0J2_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 9.890e-33
Identity = 62/129 (48.06%), Postives = 86/129 (66.67%), Query Frame = 3
Query:    3 FTNRLKKAIANLRVHLHNGCLSDPDPCDVQLFFWAGRTADGVDRFRCARETSNTENYHKPVRDLLAGFGTSPRMAHSVLLLFNYRRNYRMAGKHRGLDPELQGWYAQWLLDDLQELTDGWFTI-PLYSG 386
            FT+R+ KA   LR H+  GCL DP+P  V LF   GRT DG++  R  + T+  EN+H+ +R L+  +  S  MAH  +LL NYRRN+RMAG HRG+DP+L G+Y+ W ++D+Q +T GW+   PLY G
Sbjct:  521 FTDRMHKATKLLRTHIEKGCLHDPNPDLVTLFEITGRTKDGLNLIRSIKGTNRIENFHQLLRLLMGSYHASALMAHFTMLLHNYRRNHRMAGLHRGMDPDLLGYYSHWEVEDIQAITKGWYDDEPLYPG 649          
BLAST of mRNA_A-nodosum_M_contig10.171.1 vs. uniprot
Match: A0A6H5JRJ6_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ6_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 2.290e-24
Identity = 59/139 (42.45%), Postives = 84/139 (60.43%), Query Frame = 3
Query:   21 KAIANLRVHLHNGCLSDPDPCDVQLFFWAGRTADGVDRFRCARETSNTENYHKPVRDLLAGFGTSPRMAHSVLLLFNYRRNYRMAGKHRGLDPELQGWYAQWLLDDLQELTDGWFTI-PLYSG*DSTKNYLDTGELTGL 434
            KA+  LR H+ N CLSDPD   + ++F  G+   G+  +RC R T++ E YH+ +R LLA +  SP +A SVLL FNYR N RM  K+RGL   L G Y Q+L++ +Q  T  W +  P++    +  + +DTGE  GL
Sbjct:  614 KAVRQLRKHIENDCLSDPD--GMAMYFAIGKNKHGLTDYRCVRGTNDVEGYHRYLRTLLASYCASPSLAQSVLLEFNYRWNLRMMIKNRGLPAALGGHYNQYLVESIQRDTADWDSSHPVFPEWPAAIDSVDTGERFGL 750          
BLAST of mRNA_A-nodosum_M_contig10.171.1 vs. uniprot
Match: A0A6H5JD89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD89_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 3.580e-20
Identity = 59/140 (42.14%), Postives = 83/140 (59.29%), Query Frame = 3
Query:   21 KAIANLRVHLHNGCLSDPDPCDVQLFFWAGRTADGV-DRFRCARETSNTENYHKPVRDLLAGFGTSPRMAHSVLLLFNYRRNYRMAGKHRGLDPELQGWYAQWLLDDLQELTDGWFTIPLYSG*DSTKNYLDTGELTGLV 437
            +AI  LRVH+ N C SD    +  L+F AG+ A+ +   FRC R T++ E YH  +R LL  +  SPR+AH +LL +NYR N R + K+RGLD  + G+Y Q +L+ +Q +T   +    YS    T  Y DTGE +G V
Sbjct:  244 EAIKRLRVHIMNDCCSDSP--NEALYFEAGKDAETLCPLFRCIRGTNDLEGYHLHMR-LLVAWCISPRLAHLLLLEYNYRWNLRQSMKNRGLDEAVGGFYDQPMLEAIQRMTSKLYGKAKYSQWLPTSAYGDTGERSGFV 380          
BLAST of mRNA_A-nodosum_M_contig10.171.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 4.640e-20
Identity = 59/140 (42.14%), Postives = 83/140 (59.29%), Query Frame = 3
Query:   21 KAIANLRVHLHNGCLSDPDPCDVQLFFWAGRTADGV-DRFRCARETSNTENYHKPVRDLLAGFGTSPRMAHSVLLLFNYRRNYRMAGKHRGLDPELQGWYAQWLLDDLQELTDGWFTIPLYSG*DSTKNYLDTGELTGLV 437
            +AI  LRVH+ N C SD    +  L+F AG+ A+ +   FRC R T++ E YH  +R LL  +  SPR+AH +LL +NYR N R + K+RGLD  + G+Y Q +L+ +Q +T   +    YS    T  Y DTGE +G V
Sbjct:  817 EAIKRLRVHIMNDCCSDSP--NEALYFEAGKDAETLCPLFRCIRGTNDLEGYHLHMR-LLVAWCISPRLAHLLLLEYNYRWNLRQSMKNRGLDEAVGGFYDQPMLEAIQRMTSKLYGKAKYSQWLPTSAYGDTGERSGFV 953          
BLAST of mRNA_A-nodosum_M_contig10.171.1 vs. uniprot
Match: A0A6H5KEU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEU8_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.460e-19
Identity = 58/140 (41.43%), Postives = 83/140 (59.29%), Query Frame = 3
Query:   21 KAIANLRVHLHNGCLSDPDPCDVQLFFWAGRTADGV-DRFRCARETSNTENYHKPVRDLLAGFGTSPRMAHSVLLLFNYRRNYRMAGKHRGLDPELQGWYAQWLLDDLQELTDGWFTIPLYSG*DSTKNYLDTGELTGLV 437
            +AI  LRVH+ N C SD    +  L+F AG+ A+ +   FRC R T++ E +H  +R LL  +  SPR+AH +LL +NYR N R + K+RGLD  + G+Y Q +L+ +Q +T   +    YS    T  Y DTGE +G V
Sbjct:  419 EAIKRLRVHIMNDCCSDAP--NEALYFEAGKDAETLCPLFRCIRGTNDLEGFHLHMR-LLVAWCISPRLAHLLLLEYNYRWNLRQSMKNRGLDEAVGGFYDQPILEAIQRMTSKLYGKAKYSQWLPTSAYGDTGERSGFV 555          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10.171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A835YZB9_9STRA1.500e-3645.45Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
D7G0J2_ECTSI9.890e-3348.063'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5JRJ6_9PHAE2.290e-2442.453'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5JD89_9PHAE3.580e-2042.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JET4_9PHAE4.640e-2042.143'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5KEU8_9PHAE1.460e-1941.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10contigA-nodosum_M_contig10:1709572..1710331 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size468
Hectar predicted targeting categoryother localisation
Exons2
Cds size372
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866347.7096179-UTR-A-nodosum_M_contig10:1709571..17096131680866347.7096179-UTR-A-nodosum_M_contig10:1709571..1709613Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10 1709572..1709613 -
1680866347.746671-UTR-A-nodosum_M_contig10:1710277..17103311680866347.746671-UTR-A-nodosum_M_contig10:1710277..1710331Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig10 1710278..1710331 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866347.7224615-CDS-A-nodosum_M_contig10:1709613..17097631680866347.7224615-CDS-A-nodosum_M_contig10:1709613..1709763Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10 1709614..1709763 -
1680866347.7326684-CDS-A-nodosum_M_contig10:1710055..17102771680866347.7326684-CDS-A-nodosum_M_contig10:1710055..1710277Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10 1710056..1710277 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10.171.1prot_A-nodosum_M_contig10.171.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10 1709614..1710277 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10.171.1

>prot_A-nodosum_M_contig10.171.1 ID=prot_A-nodosum_M_contig10.171.1|Name=mRNA_A-nodosum_M_contig10.171.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=124bp
MVVSAIPILATSSCSSGRVARRTGWTDSAVRGKPATRRITTNPFAIFLPA
SEPPRVWPILFCFSSTTGATIVWQASTGVWTLSCKGGTRSGCWTICRSLR
TGGSRSPSIRGRIQPKITLIPGN*
back to top

mRNA from alignment at A-nodosum_M_contig10:1709572..1710331-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10.171.1 ID=mRNA_A-nodosum_M_contig10.171.1|Name=mRNA_A-nodosum_M_contig10.171.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=760bp|location=Sequence derived from alignment at A-nodosum_M_contig10:1709572..1710331- (Ascophyllum nodosum dioecious)
TCTTCACAAATCGTTTAAAGAAGGCCATAGCGAACCTGCGGGTCCATCTT CATAATGGTTGTCTCAGCGATCCCGATCCTTGCGACGTCCAGTTGTTCTT CTGGGCGGGTCGCACGGCGGACGGGGTGGACAGATTCCGCTGTGCGCGGG AAACCAGCAACACGGAGAATTACCACAAACCCGTTCGCGATCTTCTTGCC GGCTTCGGAACCTCCCCGCGTATGGCCCATTCTGTTCTGCTTCTCTTCAA CTACAGGCGCAACTATCGTATGGCAGGTGGGTTGGATTCAGCTCGATAGT GTAGTCGTAACGTTGTGTTACACATTAGGCGATACATTGGACGATGCCTC TTACATAGAACTCGGGAATCGAGATATTATGTTTGTGGCTATATAGCCGT ATCTGCCTATCGTGAAGTGTGGGGTAGGGTTTGCCCTTGCGGGCGCGCGC TGGAGATAGGTACGTCTTTGCCCTGATGTCGCTATTGTTACCTAGTTGTG GGGGCTCTGGCCGTTGTAAGCACTCGCACCGTTCGTCTTTGATGCTAACG TCGTTCATTTACTTCCAGGCAAGCACAGGGGTTTGGACCCTGAGTTGCAA GGGTGGTACGCGCAGTGGCTGCTGGACGATTTGCAGGAGCTTACGGACGG GTGGTTCACGATCCCCCTCTATTCGGGGTAGGATTCAACCAAAAATTACC TTGATACCGGGGAACTGACCGGTCTCGTGACAGCACGGAGTTCAAGCGAC GCTCGCGTGG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig10:1709572..1710331-

>mRNA_A-nodosum_M_contig10.171.1 ID=mRNA_A-nodosum_M_contig10.171.1|Name=mRNA_A-nodosum_M_contig10.171.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at A-nodosum_M_contig10:1709572..1710331- (Ascophyllum nodosum dioecious)
ATGGTTGTCTCAGCGATCCCGATCCTTGCGACGTCCAGTTGTTCTTCTGG
GCGGGTCGCACGGCGGACGGGGTGGACAGATTCCGCTGTGCGCGGGAAAC
CAGCAACACGGAGAATTACCACAAACCCGTTCGCGATCTTCTTGCCGGCT
TCGGAACCTCCCCGCGTATGGCCCATTCTGTTCTGCTTCTCTTCAACTAC
AGGCGCAACTATCGTATGGCAGGCAAGCACAGGGGTTTGGACCCTGAGTT
GCAAGGGTGGTACGCGCAGTGGCTGCTGGACGATTTGCAGGAGCTTACGG
ACGGGTGGTTCACGATCCCCCTCTATTCGGGGTAGGATTCAACCAAAAAT
TACCTTGATACCGGGGAACTGA
back to top