mRNA_A-nodosum_M_contig10.134.3 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig10.134.3 vs. uniprot
Match: D8LJW6_ECTSI (Inversin protein alternative isoform n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJW6_ECTSI) HSP 1 Score: 165 bits (418), Expect = 3.300e-38 Identity = 85/153 (55.56%), Postives = 104/153 (67.97%), Query Frame = 1
Query: 1213 SGVVNRRETSLWSDVAAGNAVSVKIFLKGGGSPDARNARTFWSLLHTACYAGQYQVALVLVSAGAKVDKEVEGRYTPLLLCCSCGSYG-VPCP-RRQSPESGVGRLTRADAECGHLKTVDILLGAGAAVECTSDQLFTPLLVAAFNGNLALAK 1665
SG + LW D AAG + S+K FL+ GG DARN T W+LLHTAC+AGQ +V VLVSAGAK++ EVEG+Y PLLLCCSCG + + CP R P V L + ECGH+K +LL AGA +E T+DQLFTPLL+A FNG L L+K
Sbjct: 21 SGSSGNKPPKLWPDAAAGKSASIKKFLRNGGHVDARNKDTMWTLLHTACHAGQNRVVEVLVSAGAKLESEVEGQYNPLLLCCSCGCHNNMVCPVLRSVPNEHVEDLEHFE-ECGHMKAARVLLKAGANLESTTDQLFTPLLIAVFNGKLGLSK 172 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10.134.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig10.134.3 >prot_A-nodosum_M_contig10.134.3 ID=prot_A-nodosum_M_contig10.134.3|Name=mRNA_A-nodosum_M_contig10.134.3|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=875bp MPNSRGARSGVVNRRETSLWSDVAAGNAVSVKIFLKGGGSPDARNARTFWback to top mRNA from alignment at A-nodosum_M_contig10:1284990..1300532+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig10.134.3 ID=mRNA_A-nodosum_M_contig10.134.3|Name=mRNA_A-nodosum_M_contig10.134.3|organism=Ascophyllum nodosum dioecious|type=mRNA|length=15543bp|location=Sequence derived from alignment at A-nodosum_M_contig10:1284990..1300532+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig10:1284990..1300532+ >mRNA_A-nodosum_M_contig10.134.3 ID=mRNA_A-nodosum_M_contig10.134.3|Name=mRNA_A-nodosum_M_contig10.134.3|organism=Ascophyllum nodosum dioecious|type=CDS|length=2625bp|location=Sequence derived from alignment at A-nodosum_M_contig10:1284990..1300532+ (Ascophyllum nodosum dioecious)back to top |