mRNA_A-nodosum_M_contig10.134.3 (mRNA) Ascophyllum nodosum dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig10.134.3 vs. uniprot
Match: D8LJW6_ECTSI (Inversin protein alternative isoform n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJW6_ECTSI) HSP 1 Score: 165 bits (418), Expect = 3.300e-38 Identity = 85/153 (55.56%), Postives = 104/153 (67.97%), Query Frame = 1 Query: 1213 SGVVNRRETSLWSDVAAGNAVSVKIFLKGGGSPDARNARTFWSLLHTACYAGQYQVALVLVSAGAKVDKEVEGRYTPLLLCCSCGSYG-VPCP-RRQSPESGVGRLTRADAECGHLKTVDILLGAGAAVECTSDQLFTPLLVAAFNGNLALAK 1665
SG + LW D AAG + S+K FL+ GG DARN T W+LLHTAC+AGQ +V VLVSAGAK++ EVEG+Y PLLLCCSCG + + CP R P V L + ECGH+K +LL AGA +E T+DQLFTPLL+A FNG L L+K
Sbjct: 21 SGSSGNKPPKLWPDAAAGKSASIKKFLRNGGHVDARNKDTMWTLLHTACHAGQNRVVEVLVSAGAKLESEVEGQYNPLLLCCSCGCHNNMVCPVLRSVPNEHVEDLEHFE-ECGHMKAARVLLKAGANLESTTDQLFTPLLIAVFNGKLGLSK 172 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10.134.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig10.134.3 >prot_A-nodosum_M_contig10.134.3 ID=prot_A-nodosum_M_contig10.134.3|Name=mRNA_A-nodosum_M_contig10.134.3|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=875bp MPNSRGARSGVVNRRETSLWSDVAAGNAVSVKIFLKGGGSPDARNARTFWback to top mRNA from alignment at A-nodosum_M_contig10:1284990..1300532+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig10.134.3 ID=mRNA_A-nodosum_M_contig10.134.3|Name=mRNA_A-nodosum_M_contig10.134.3|organism=Ascophyllum nodosum dioecious|type=mRNA|length=15543bp|location=Sequence derived from alignment at A-nodosum_M_contig10:1284990..1300532+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig10:1284990..1300532+ >mRNA_A-nodosum_M_contig10.134.3 ID=mRNA_A-nodosum_M_contig10.134.3|Name=mRNA_A-nodosum_M_contig10.134.3|organism=Ascophyllum nodosum dioecious|type=CDS|length=2625bp|location=Sequence derived from alignment at A-nodosum_M_contig10:1284990..1300532+ (Ascophyllum nodosum dioecious)back to top |