Homology
BLAST of mRNA_A-nodosum_M_contig10.120.1 vs. uniprot
Match:
A0A6H5L2L7_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2L7_9PHAE)
HSP 1 Score: 223 bits (568), Expect = 4.470e-59
Identity = 197/559 (35.24%), Postives = 254/559 (45.44%), Query Frame = 1
Query: 1240 ANDFRVSEAEGAGVAGNTGES-------VLIAVDNLLKEVDERNRALL------AGGFDDSNVQKEAQHTRTIQMVDWEGSLTLGVRPRDEIPLGNVKNLRNGDTHMNVVVPETLVKLVREGWLSASRSR-GDSWAGNAPRARGLEGISTNFGCGQECVSELFGKLLDLGISHV--------------DGEAHGIA-TRLSQAFRGSVCTQTLCVECERDRLDRDTFTELVLPPLLPLPSSSDHEGHKPSAVKSTSSPKSL-----TLLELVKATLGSESLVGNNKVWCQFCRQQGEAERRSTLHCSPRLLALHLRPATDEISDR---PVESAWASAPGSLKAMPENRHCVRSVDSKL--------IERVMAIQGASMCQFHETTRAEAGAAKEASYTDQEEGATVDDRRGKHEKKKQLPLPDPSFEVVYDLVGIILHQGRSMGSGHYTFARHVLHDHAPSRRATISDSGTGRPSVIEKSDNRRVEDSNDAQYFSFQDCQGQDGRENSQSRL-PPDENFVIFDDACVRFLSPEEERILLNGGGSSWGFGDAFLVFYARR 2778
A D + A AG A G VL+A++ +L E++ RNRAL AG + E + T + E D+ PL + G + + P +LV+L+ GWLSA R+R G AG ST+FG GQ CVSEL GK L L + G H + L+QAFRG++C +TLCVECERDR R+ FTEL LPPLLP + + SL T+ L+ ESL GNNKVWC+ CRQ EAERRS++H P LLALH+RP T + S P A AS + + R R D +L IER + ++ A+ CQFH G +VD G+ L D S ++ YDL+G ILHQG+++ SGHYTFA + A A+ DNR + QG G + S PD F +FDDA VR+LS EEER +L G G GFGD FLVFYARR
Sbjct: 30 AADAAPAGAALAGTAAPVGRETGTQRNPVLVALEQVLGEMETRNRALFQQQLVAAGSQTAVSPPAEPESTSSGATSSAESKTCQWF---DQTPLRPSASTGEG-VRVESIAPTSLVELIHGGWLSADRARLGGGGAGTTG--------STDFGTGQACVSELLGKFLGLVVDDXXXXXXXXXXXXXXRSGGTHSSSFCGLAQAFRGTLCARTLCVECERDRTAREDFTELTLPPLLPPQHAPPLTAQRAIPAAENDGGPSLRGRHRTIQTLIDGVFERESLAGNNKVWCEACRQWTEAERRSSVHSPPGLLALHVRPGTRKRSSPCLYPKALARASGGAPDSVVGDVR---RGADGRLPAGSREEAIERTLVVRKAARCQFHG-----GGVNSXXXXXXXXXXXSVDSCTGQ--------LCD-SGDIFYDLIGAILHQGQTLASGHYTFAINA----AAGDWASFLAQQXXXXXXXADRDNRALVQ------------QGPPGATAAGSTYGKPD--FALFDDATVRWLSLEEERAVLRGDGG--GFGDPFLVFYARR 539
BLAST of mRNA_A-nodosum_M_contig10.120.1 vs. uniprot
Match:
D7FM48_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM48_ECTSI)
HSP 1 Score: 192 bits (488), Expect = 3.350e-48
Identity = 228/757 (30.12%), Postives = 292/757 (38.57%), Query Frame = 1
Query: 628 APSGYTRKSL-------PVQRSGSWVGGSRQARLRLSLEKRRALPVPQLEATLSTASIDRKHGDGSESAPQGYPKSVPFQQQSRSKFEAPGALP----ASGVP---NLGRHDFNLNRSSVVASERASALPRDQTSTPPPPPFVGLVNLGETCYINAVVQALVACSRAILSSTGRCSPSDTAHVMGSNRTCGESGVPAASRQGSNGEKEVVLWSAAIVDANDFRVSEAEGAGVAGNTGESVLIAVDNLLKEVDERNRAL----LAGGFDDSNVQKEAQHTRTIQMVDWEGSLTLGVRPRDEIPLGNVKNLRNGDTHMNVVVPETLVKLVREGWLSASRSRGDSWAGNAPRARGLEGISTNFGCGQECVSELFGKLLDL----------GISHVDGEAHGIATR-----LSQAFRGSVCTQTLCVECERDRLDRDTFTELVLPPLLPLPSSSDH---EGHKPSAVKSTSSP----KSLTLLELVKATLGSESLVGNNKVWCQFCRQQGEAERRSTLHCSPRLLALHLRPATDEISDRPVESAWASAPGSLKAMPENRHCVRSVDSKLIERVMAIQGASMCQFHETTRAEAGAAKEASYTDQEEGATVDDRRGKHEKKKQLPLPDPSFEVVYDLVGIILHQGRSMGSGHYTFARHVLHDHAPSRRATISDSGTGRPSVIEKSDNRRVEDSNDAQYFSFQDCQGQDGRENSQSRLPPDENFVIFDDACVRFLSPEEERILLNGGGSSWGFGDAFLVFYARR 2778
APS +R ++ P S S V R+ R RL L KRR +P A + SI G S FQ++ RS F + AL A G P + G + L+R+ V+A +A ++ S+ P PPFVGL NLGETCY+NAV+QAL AC + SS G GS +C A+ G+ E VL AGV G VL A++ +L E++ RNRAL L + V A+ T + +P D+ PL + G + + P LV+L+R GWLSA RSR G A G ST FG GQ CVSEL GK L L + V G G + L+QAFRG++C +TLCVECERDR R+ FTEL LPPLLP P + +G P+A ++ P + T+ LV ESL GNNK +C S +V YDL+G+ILHQG+++ SGHYTFA H A DS S +E G S P F +FDDA V +LSPEEER +L GGG FGD FLVFYARR
Sbjct: 14 APSAQSRAAVLFGAENHPPVGSSSGVNRLRK-RSRLCLGKRRRA-LPAQHAAVGQPSI-------------GTAGSPSFQERFRSPFTSSAALAPPAEAIGYPWGASPGLSETCLDRAGVLAP---AAWTIERPSSGPSPPFVGLKNLGETCYVNAVLQALTACHGVLTSSRGGGGGWHDVGSEGSEGSCSTPPAADAAPAGAASEGTAVLV-----------------AGVTGTQRNPVLAALEQVLGEMETRNRALSQQQLVAFGSQTAVSSPAEPESTGSGAT-SSPESKTCQPYDQTPLRPSASTGEG-VLVEAIAPTFLVELIRGGWLSADRSR---LGGGGAGATG----STEFGTGQACVSELLGKFLGLVVDDGGSGATSLGGVGGRRSGGSHSSSFCCLAQAFRGTLCARTLCVECERDRTAREDFTELTLPPLLPPPQHAPPLTAQGAIPAA-ENDGGPSLRGRRRTMQTLVDGVFEGESLAGNNK--------------------------------------------------------------------------------LCD--------------------------------------------SGDVFYDLIGVILHQGQTLASGHYTFALH----------AAAGDSA----SFLEXXXXXXXXXXXXXXXXXXXXXXXXXG---STCGKP---GFALFDDATVGWLSPEEERAVLRGGGGV--FGDPFLVFYARR 579
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10.120.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 4.47e-59 / Id = 35.24 Expect = 3.35e-48 / Id = 30.12 Sequence A0A6H5L2L7_9PHAE D7FM48_ECTSI
Match Name E-value Identity Description
A0A6H5L2L7_9PHAE 4.470e-59 35.24 USP domain-containing protein n=1 Tax=Ectocarpus s... [more] D7FM48_ECTSI 3.350e-48 30.12 USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 1 Seed ortholog 144197.XP_008286375.1 Preferred name USP1 PFAMs UCH Model size 3413 Max annot lvl 33208|Metazoa KEGG ko ko:K11832 KEGG Pathway ko03460,map03460 Hectar predicted targeting category other localisation GOs GO:0001501,GO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0004843,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006282,GO:0006464,GO:0006508,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0016579,GO:0016787,GO:0019219,GO:0019222,GO:0019538,GO:0019783,GO:0031323,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0033554,GO:0035520,GO:0036211,GO:0036459,GO:0042769,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0048583,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051171,GO:0051606,GO:0051716,GO:0060255,GO:0065007,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0080090,GO:0080134,GO:0080135,GO:0101005,GO:0140096,GO:1901564,GO:2001020 Exons 1 Evalue 2.35e-06 EggNOG OGs KOG1864@1|root,KOG1864@2759|Eukaryota,38DYD@33154|Opisthokonta,3BAN8@33208|Metazoa,3D0YD@33213|Bilateria,4844F@7711|Chordata,493AG@7742|Vertebrata,49R17@7898|Actinopterygii Ec32 ortholog description Peptidase C19, ubiquitin carboxyl-terminal hydrolase Ec32 ortholog Ec-01_010630.1 EC 3.4.19.12 Description Ubiquitin specific protease 1 Cds size 2634 COG category O BRITE ko00000,ko00001,ko01000,ko01002,ko03400,ko04121
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680866352.7944446-UTR-A-nodosum_M_contig10:1116438..1116591 1680866352.7944446-UTR-A-nodosum_M_contig10:1116438..1116591 Ascophyllum nodosum dioecious UTR A-nodosum_M_contig10 1116439..1116591 + 1680866352.8580341-UTR-A-nodosum_M_contig10:1119225..1119851 1680866352.8580341-UTR-A-nodosum_M_contig10:1119225..1119851 Ascophyllum nodosum dioecious UTR A-nodosum_M_contig10 1119226..1119851 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1680866352.8468628-CDS-A-nodosum_M_contig10:1116591..1119225 1680866352.8468628-CDS-A-nodosum_M_contig10:1116591..1119225 Ascophyllum nodosum dioecious CDS A-nodosum_M_contig10 1116592..1119225 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig10.120.1
>prot_A-nodosum_M_contig10.120.1 ID=prot_A-nodosum_M_contig10.120.1|Name=mRNA_A-nodosum_M_contig10.120.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=878bp
MSEGAQPSQQVRSSTTTNTRSNGHLKRPRSVTPTKPSGILPAENPIPRYG back to top mRNA from alignment at A-nodosum_M_contig10:1116439..1119851+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10.120.1 ID=mRNA_A-nodosum_M_contig10.120.1|Name=mRNA_A-nodosum_M_contig10.120.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3413bp|location=Sequence derived from alignment at A-nodosum_M_contig10:1116439..1119851+ (Ascophyllum nodosum dioecious)TGAAATCTCGTCCTCCTTTCTGTAGATAGAGGCCCTGGGGATAGCTCCTC
CTCCTTGAAATTTTGGGAATTTTTTTGAGGTCCTGTACTGGCTTCCAGGA
GAGCTCTGCTTGGAAGGGAAGAAGGGCGGCGTCGCTCTATCCTTTATTGG
CGG ATGAGTGAGGGTGCCCAACCGTCTCAGCAAGTTCGTTCTTCTACGAC
GACAAACACGCGGAGTAACGGCCATCTGAAGCGCCCTAGATCAGTTACAC
CCACCAAGCCCAGTGGAATCCTACCTGCTGAAAATCCCATTCCTCGGTAT
GGTACGAGATCGACCACAAAAGTGCGTCAGAGAAGACAATCGATCATCGC
CCAACTCCCCACCCAGCAGTCTGAATTTAGTCGGCCTGGGAAAAACGTAG
CCGCTGCTGACACAATCCTTTCGTCTAATACACGAGTACTGGACGGAGGA
GTGTCAACGCCTCTCAGTACAGGAGGAGAGCGGGAAGCTCTGGGAACGTT
TCCTCCTAAAGGCTCTAGTACTGCTAACGCATCTGAAGCGGCGGTAACAG
AGAGCGCCAGTGTTTCATCGGTTGCTCCAATAGTAAGGACGATCGATCCT
ACCGCAGGATGTCTGGGCCCCTCCCTCGCACCTTCAGGATATACGCGGAA
ATCGCTACCGGTACAAAGAAGCGGGAGTTGGGTTGGAGGTAGTCGTCAGG
CAAGATTGAGGCTCAGCCTGGAAAAGCGTCGCGCGTTGCCCGTGCCGCAA
CTGGAGGCTACCTTGTCAACCGCGTCGATTGATCGCAAGCACGGTGATGG
ATCCGAGTCCGCGCCGCAGGGCTATCCAAAGAGCGTTCCGTTCCAGCAGC
AAAGCCGCTCGAAGTTCGAAGCGCCTGGGGCCCTACCCGCTTCTGGGGTC
CCGAACCTTGGGCGCCACGATTTCAATTTGAATCGATCGTCGGTAGTGGC
CTCTGAGCGCGCCTCGGCTTTACCTCGCGATCAGACGTCAACACCACCGC
CGCCGCCGTTTGTGGGGTTAGTCAACCTAGGCGAAACCTGCTACATAAAT
GCCGTGGTGCAAGCGCTGGTGGCCTGCTCTCGAGCGATACTATCATCAAC
AGGGAGATGCAGTCCGAGCGACACTGCGCACGTTATGGGAAGCAACAGGA
CCTGCGGCGAGTCAGGCGTGCCAGCGGCGTCACGCCAAGGATCAAATGGC
GAGAAAGAAGTCGTTCTTTGGTCCGCGGCTATCGTCGATGCTAACGACTT
CAGAGTGAGTGAAGCAGAAGGGGCAGGGGTTGCTGGTAACACGGGGGAAT
CGGTATTGATCGCCGTGGATAATTTGTTAAAAGAAGTGGATGAACGCAAC
AGAGCATTGTTAGCGGGAGGTTTTGACGATAGCAACGTTCAGAAAGAGGC
TCAACATACGCGCACCATCCAGATGGTGGACTGGGAGGGGTCTTTGACGT
TGGGAGTACGGCCACGAGACGAGATACCGCTGGGCAATGTCAAAAACCTC
AGGAACGGAGACACCCACATGAATGTCGTCGTTCCAGAAACGTTGGTCAA
GCTCGTGCGTGAGGGCTGGCTCAGCGCTAGCCGCTCAAGAGGAGATAGTT
GGGCTGGCAATGCGCCGCGAGCCAGAGGACTCGAAGGCATTTCAACGAAT
TTCGGGTGCGGACAAGAATGCGTCTCCGAGCTTTTTGGTAAGCTCTTGGA
TCTCGGGATTTCTCACGTGGACGGGGAGGCCCATGGCATCGCCACCCGCT
TGAGCCAAGCTTTCCGCGGCTCGGTATGTACTCAAACGCTCTGCGTGGAG
TGCGAGCGGGACAGACTCGACCGCGATACCTTCACAGAGCTCGTTCTGCC
TCCACTGTTACCTCTGCCTTCATCTTCAGACCACGAGGGCCATAAGCCAT
CTGCAGTGAAGAGCACTTCATCGCCCAAGAGCCTGACGTTATTGGAACTC
GTGAAGGCGACGCTAGGGAGCGAATCACTCGTGGGAAACAACAAGGTTTG
GTGCCAGTTTTGCCGCCAGCAGGGGGAGGCCGAGCGCCGATCTACCCTCC
ACTGCTCTCCACGTTTGCTTGCCCTTCATCTTCGACCAGCGACTGACGAA
ATTTCGGATCGGCCAGTCGAGAGCGCTTGGGCGTCCGCCCCCGGGTCACT
TAAAGCGATGCCTGAGAACAGGCATTGCGTTAGAAGCGTCGACTCAAAGC
TGATCGAGCGTGTGATGGCCATCCAAGGTGCTTCTATGTGCCAGTTTCAC
GAGACGACGCGGGCAGAGGCAGGTGCAGCAAAGGAAGCTTCGTACACCGA
CCAGGAGGAAGGAGCAACAGTGGACGATCGAAGAGGTAAGCACGAAAAAA
AAAAACAGTTGCCGCTCCCGGATCCTTCGTTCGAGGTTGTTTACGACCTC
GTCGGCATCATACTGCACCAGGGCCGATCGATGGGGTCTGGTCACTACAC
CTTCGCACGCCACGTACTCCACGATCACGCGCCCAGTCGCAGAGCAACTA
TCAGTGACAGCGGGACCGGACGGCCTTCAGTAATAGAGAAGAGTGATAAC
AGGCGTGTAGAGGATAGTAATGATGCGCAATATTTTTCGTTTCAAGATTG
CCAAGGGCAGGATGGGCGGGAGAATAGTCAGTCACGACTTCCCCCTGATG
AGAACTTTGTGATTTTCGACGACGCTTGCGTACGATTTTTATCGCCCGAG
GAGGAACGAATTCTCTTAAATGGCGGTGGCTCGTCGTGGGGTTTCGGCGA
CGCTTTCTTGGTGTTCTATGCGCGGCGGGACTCGTGA CGCTCAGCACAAA
ACCGCACGCACGAAGCATACCAAACCGTTCGCAAAAACGTTTGCTAGCAT
GAGGTGTGCTGTTTGAAGTTCAGTCGGTTGTGGTGTGCTGGTATGTTTTT
GTTTTGTATTATTGTAGGCGGATTGTTGCTGCACAATTTAGGCCTGCACA
TTTCCTGTGCTTTTCCTCTTAACAATGTTCTTTCTAACGACGCTGGATGT
CGAGCTACCTTCTCGATTTGCCCAAGTACCTCCTTGTTCCTGCAACAGAC
AGACGCTTTTCGTAGTTCTCTGTATTACAATTAACCTGGCAGATAAAATG
TCGTCTGCTCGGCCTGAAGTCAAGCCAAGGCATCCTCTTGATTCGTGTTC
TGGCGTTGGTTTCTTTGTAGCAATAGTGACATGTTCTGTACTGTACTCAA
GTACGTCGGAGTTTGTTAACGCTTTCCCCAGTCATTTATTTTTTCTCGTT
TTGCGTAGGGCTTGTTTTCCAGGTTATCGATCTCAATCCCGGTTGCAGTT
CGCTGAATGGGAAAAAAATATTGGAAATGAGGCAAATAATCCACGACAGA
ATTAACAATTCTTGACGTTGGCTTTTTATTTTTCATCATTTTTTTTTATT
GTATATGCAGCAC back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig10:1116439..1119851+
>mRNA_A-nodosum_M_contig10.120.1 ID=mRNA_A-nodosum_M_contig10.120.1|Name=mRNA_A-nodosum_M_contig10.120.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=2634bp|location=Sequence derived from alignment at A-nodosum_M_contig10:1116439..1119851+ (Ascophyllum nodosum dioecious) back to top