prot_A-nodosum_M_contig10.120.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig10.120.1
Unique Nameprot_A-nodosum_M_contig10.120.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length878
Homology
BLAST of mRNA_A-nodosum_M_contig10.120.1 vs. uniprot
Match: A0A6H5L2L7_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2L7_9PHAE)

HSP 1 Score: 224 bits (570), Expect = 3.750e-60
Identity = 197/559 (35.24%), Postives = 254/559 (45.44%), Query Frame = 0
Query:  363 ANDFRVSEAEGAGVAGNTGES-------VLIAVDNLLKEVDERNRALL------AGGFDDSNVQKEAQHTRTIQMVDWEGSLTLGVRPRDEIPLGNVKNLRNGDTHMNVVVPETLVKLVREGWLSASRSR-GDSWAGNAPRARGLEGISTNFGCGQECVSELFGKLLDLGISHV--------------DGEAHGIA-TRLSQAFRGSVCTQTLCVECERDRLDRDTFTELVLPPLLPLPSSSDHEGHKPSAVKSTSSPKSL-----TLLELVKATLGSESLVGNNKVWCQFCRQQGEAERRSTLHCSPRLLALHLRPATDEISDR---PVESAWASAPGSLKAMPENRHCVRSVDSKL--------IERVMAIQGASMCQFHETTRAEAGAAKEASYTDQEEGATVDDRRGKHEKKKQLPLPDPSFEVVYDLVGIILHQGRSMGSGHYTFARHVLHDHAPSRRATISDSGTGRPSVIEKSDNRRVEDSNDAQYFSFQDCQGQDGRENSQSRL-PPDENFVIFDDACVRFLSPEEERILLNGGGSSWGFGDAFLVFYARR 875
            A D   + A  AG A   G         VL+A++ +L E++ RNRAL       AG     +   E + T +      E          D+ PL    +   G   +  + P +LV+L+  GWLSA R+R G   AG           ST+FG GQ CVSEL GK L L +                  G  H  +   L+QAFRG++C +TLCVECERDR  R+ FTEL LPPLLP   +      +           SL     T+  L+      ESL GNNKVWC+ CRQ  EAERRS++H  P LLALH+RP T + S     P   A AS       + + R   R  D +L        IER + ++ A+ CQFH       G              +VD   G+        L D S ++ YDL+G ILHQG+++ SGHYTFA +     A    A+               DNR +              QG  G   + S    PD  F +FDDA VR+LS EEER +L G G   GFGD FLVFYARR
Sbjct:   30 AADAAPAGAALAGTAAPVGRETGTQRNPVLVALEQVLGEMETRNRALFQQQLVAAGSQTAVSPPAEPESTSSGATSSAESKTCQWF---DQTPLRPSASTGEG-VRVESIAPTSLVELIHGGWLSADRARLGGGGAGTTG--------STDFGTGQACVSELLGKFLGLVVDDXXXXXXXXXXXXXXRSGGTHSSSFCGLAQAFRGTLCARTLCVECERDRTAREDFTELTLPPLLPPQHAPPLTAQRAIPAAENDGGPSLRGRHRTIQTLIDGVFERESLAGNNKVWCEACRQWTEAERRSSVHSPPGLLALHVRPGTRKRSSPCLYPKALARASGGAPDSVVGDVR---RGADGRLPAGSREEAIERTLVVRKAARCQFHG-----GGVNSXXXXXXXXXXXSVDSCTGQ--------LCD-SGDIFYDLIGAILHQGQTLASGHYTFAINA----AAGDWASFLAQQXXXXXXXADRDNRALVQ------------QGPPGATAAGSTYGKPD--FALFDDATVRWLSLEEERAVLRGDGG--GFGDPFLVFYARR 539          
BLAST of mRNA_A-nodosum_M_contig10.120.1 vs. uniprot
Match: D7FM48_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM48_ECTSI)

HSP 1 Score: 193 bits (490), Expect = 6.480e-49
Identity = 228/757 (30.12%), Postives = 292/757 (38.57%), Query Frame = 0
Query:  159 APSGYTRKSL-------PVQRSGSWVGGSRQARLRLSLEKRRALPVPQLEATLSTASIDRKHGDGSESAPQGYPKSVPFQQQSRSKFEAPGALP----ASGVP---NLGRHDFNLNRSSVVASERASALPRDQTSTPPPPPFVGLVNLGETCYINAVVQALVACSRAILSSTGRCSPSDTAHVMGSNRTCGESGVPAASRQGSNGEKEVVLWSAAIVDANDFRVSEAEGAGVAGNTGESVLIAVDNLLKEVDERNRAL----LAGGFDDSNVQKEAQHTRTIQMVDWEGSLTLGVRPRDEIPLGNVKNLRNGDTHMNVVVPETLVKLVREGWLSASRSRGDSWAGNAPRARGLEGISTNFGCGQECVSELFGKLLDL----------GISHVDGEAHGIATR-----LSQAFRGSVCTQTLCVECERDRLDRDTFTELVLPPLLPLPSSSDH---EGHKPSAVKSTSSP----KSLTLLELVKATLGSESLVGNNKVWCQFCRQQGEAERRSTLHCSPRLLALHLRPATDEISDRPVESAWASAPGSLKAMPENRHCVRSVDSKLIERVMAIQGASMCQFHETTRAEAGAAKEASYTDQEEGATVDDRRGKHEKKKQLPLPDPSFEVVYDLVGIILHQGRSMGSGHYTFARHVLHDHAPSRRATISDSGTGRPSVIEKSDNRRVEDSNDAQYFSFQDCQGQDGRENSQSRLPPDENFVIFDDACVRFLSPEEERILLNGGGSSWGFGDAFLVFYARR 875
            APS  +R ++       P   S S V   R+ R RL L KRR   +P   A +   SI             G   S  FQ++ RS F +  AL     A G P   + G  +  L+R+ V+A    +A   ++ S+ P PPFVGL NLGETCY+NAV+QAL AC   + SS G           GS  +C       A+  G+  E   VL                  AGV G     VL A++ +L E++ RNRAL    L      + V   A+   T          +   +P D+ PL    +   G   +  + P  LV+L+R GWLSA RSR     G    A G    ST FG GQ CVSEL GK L L           +  V G   G +       L+QAFRG++C +TLCVECERDR  R+ FTEL LPPLLP P  +     +G  P+A ++   P    +  T+  LV      ESL GNNK                                                                                +C                                             S +V YDL+G+ILHQG+++ SGHYTFA H          A   DS     S +E                         G   S    P    F +FDDA V +LSPEEER +L GGG    FGD FLVFYARR
Sbjct:   14 APSAQSRAAVLFGAENHPPVGSSSGVNRLRK-RSRLCLGKRRRA-LPAQHAAVGQPSI-------------GTAGSPSFQERFRSPFTSSAALAPPAEAIGYPWGASPGLSETCLDRAGVLAP---AAWTIERPSSGPSPPFVGLKNLGETCYVNAVLQALTACHGVLTSSRGGGGGWHDVGSEGSEGSCSTPPAADAAPAGAASEGTAVLV-----------------AGVTGTQRNPVLAALEQVLGEMETRNRALSQQQLVAFGSQTAVSSPAEPESTGSGAT-SSPESKTCQPYDQTPLRPSASTGEG-VLVEAIAPTFLVELIRGGWLSADRSR---LGGGGAGATG----STEFGTGQACVSELLGKFLGLVVDDGGSGATSLGGVGGRRSGGSHSSSFCCLAQAFRGTLCARTLCVECERDRTAREDFTELTLPPLLPPPQHAPPLTAQGAIPAA-ENDGGPSLRGRRRTMQTLVDGVFEGESLAGNNK--------------------------------------------------------------------------------LCD--------------------------------------------SGDVFYDLIGVILHQGQTLASGHYTFALH----------AAAGDSA----SFLEXXXXXXXXXXXXXXXXXXXXXXXXXG---STCGKP---GFALFDDATVGWLSPEEERAVLRGGGGV--FGDPFLVFYARR 579          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10.120.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L2L7_9PHAE3.750e-6035.24USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FM48_ECTSI6.480e-4930.12USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.90.70.10Cysteine proteinasescoord: 268..357
e-value: 9.6E-7
score: 29.9
NoneNo IPR availableGENE3D3.90.70.10Cysteine proteinasescoord: 520..877
e-value: 7.5E-23
score: 82.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..77
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 109..128
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 224..238
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..77
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 717..736
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 204..246
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 707..736
NoneNo IPR availablePANTHERPTHR21646UBIQUITIN CARBOXYL-TERMINAL HYDROLASEcoord: 239..876
NoneNo IPR availableCDDcd02257Peptidase_C19coord: 504..774
e-value: 1.71978E-9
score: 57.493
IPR028881PAN2, UCH domainPFAMPF13423UCH_1coord: 530..815
e-value: 2.4E-9
score: 37.3
IPR018200Ubiquitin specific protease, conserved sitePROSITEPS00973USP_2coord: 747..765
IPR028889Ubiquitin specific protease domainPROSITEPS50235USP_3coord: 287..875
score: 17.100185
IPR038765Papain-like cysteine peptidase superfamilySUPERFAMILY54001Cysteine proteinasescoord: 282..876

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10contigA-nodosum_M_contig10:1116592..1119225 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10.120.1mRNA_A-nodosum_M_contig10.120.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig10 1116439..1119851 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig10.120.1 ID=prot_A-nodosum_M_contig10.120.1|Name=mRNA_A-nodosum_M_contig10.120.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=878bp
MSEGAQPSQQVRSSTTTNTRSNGHLKRPRSVTPTKPSGILPAENPIPRYG
TRSTTKVRQRRQSIIAQLPTQQSEFSRPGKNVAAADTILSSNTRVLDGGV
STPLSTGGEREALGTFPPKGSSTANASEAAVTESASVSSVAPIVRTIDPT
AGCLGPSLAPSGYTRKSLPVQRSGSWVGGSRQARLRLSLEKRRALPVPQL
EATLSTASIDRKHGDGSESAPQGYPKSVPFQQQSRSKFEAPGALPASGVP
NLGRHDFNLNRSSVVASERASALPRDQTSTPPPPPFVGLVNLGETCYINA
VVQALVACSRAILSSTGRCSPSDTAHVMGSNRTCGESGVPAASRQGSNGE
KEVVLWSAAIVDANDFRVSEAEGAGVAGNTGESVLIAVDNLLKEVDERNR
ALLAGGFDDSNVQKEAQHTRTIQMVDWEGSLTLGVRPRDEIPLGNVKNLR
NGDTHMNVVVPETLVKLVREGWLSASRSRGDSWAGNAPRARGLEGISTNF
GCGQECVSELFGKLLDLGISHVDGEAHGIATRLSQAFRGSVCTQTLCVEC
ERDRLDRDTFTELVLPPLLPLPSSSDHEGHKPSAVKSTSSPKSLTLLELV
KATLGSESLVGNNKVWCQFCRQQGEAERRSTLHCSPRLLALHLRPATDEI
SDRPVESAWASAPGSLKAMPENRHCVRSVDSKLIERVMAIQGASMCQFHE
TTRAEAGAAKEASYTDQEEGATVDDRRGKHEKKKQLPLPDPSFEVVYDLV
GIILHQGRSMGSGHYTFARHVLHDHAPSRRATISDSGTGRPSVIEKSDNR
RVEDSNDAQYFSFQDCQGQDGRENSQSRLPPDENFVIFDDACVRFLSPEE
ERILLNGGGSSWGFGDAFLVFYARRDS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028881PAN2_UCH_dom
IPR018200USP_CS
IPR028889USP_dom
IPR038765Papain-like_cys_pep_sf