mRNA_A-nodosum_M_contig10.11.1 (mRNA) Ascophyllum nodosum dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig10.11.1 vs. uniprot
Match: D7FM33_ECTSI (W2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM33_ECTSI) HSP 1 Score: 365 bits (938), Expect = 1.770e-109 Identity = 339/648 (52.31%), Postives = 381/648 (58.80%), Query Frame = 1 Query: 448 GYDAPPPTE--RKRLQLHSRTAPLPLPPMSPKXXXXXXXXXASRP------SGPRSNPFGAAQAVDTTQRDREIEAKLESERQTSFRRRDDTFRSSDKPAIATGDSNPEEAGTSVNGVDEEIEQKADLDDEGGDEAKPEVDDKEADVESTAP--------------------GIEDAERGGEKPAPPKPVGRWAALRREGGGDDRPSQSVGGFTRRDRDD-----------DRRGGGYGRD-DRSSFGRKSDDVGPGRGSFTSSRMGREPVQPP----APPAGNAFAKRFGSNFDRDTDRAYPR-SSGGMGGGG-FDRRDDERRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXFRG-------------------------GXXXXXXMGPSRFNRDRESD-----SQRRPDP------SSPLERPPQGGRLSSGSAESPSP-ARSFSQISIKETKEAKPLPXXXXXXXXXXXXXXXXXXXXXXXXKEDPTEVARASAEEALASGKRGTELKEFVMTQEKRTTAGALLAAALKDVATPQDMKWARQEEFGAALVALSA--DNTEEQVGIIYAVVGKCHEMGFPKETNGAVVQTIFMGMYNCDLCEEEAFIEWKDDVDSTAEGRMKAVMQTTPWFFWLVSVEEDED*SE 2136
GYD PP + R RLQL SR AP PLPPM K XX +GPR+NPFGAAQAVDTTQ+D+EIEAK+E+ RQTSFRRRD+ RSS KPA G E+ G + A G++A P E TA G ED G K P KPVGRWAALRREG D RG RD +R SFGR+++ G G APPAGNAFAKRFGSNFDRD++R YPR ++GGMGGGG FDRRDD+RR XXXXXXXXXXX XXXXXXXX G XXXXXX SRF+RD D + RRP +SPL RP GG G S SP A S S++SIKE K K + XXXXXXXXXXXXXXXXXXXXX KEDP EVARASA EALASGKRG +LKEFV+ QEKRTTAGALLAAAL+ A+P+DMKW ++EFG AL ALS D+T++Q+G+IYAVV KCH++GFPK AVVQTIFMGMYN DLCEEEAFIEWKDDVDSTAEGRMKAVMQTTPWF WL SVEE+ED E
Sbjct: 13 GYDNPPASSEGRPRLQLQSRKAPPPLPPMGSKEDKAAAEXXXXXXXXXXXXAGPRANPFGAAQAVDTTQKDKEIEAKVEAARQTSFRRRDEAVRSS-KPAEGGG----EDGGAT-----------AXXXGAAGEDASPATAAMEDGTTKTAADXXXXXXXXXXXXXXXXXTAGEED---GKPKAEPAKPVGRWAALRREGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDGRGXXXXRDGERPSFGRRNEGDSAGGGXXXXXXXXXXXXXXXXXXXAPPAGNAFAKRFGSNFDRDSER-YPRPNAGGMGGGGGFDRRDDDRRGXXXXXXXXXXXSGGSGXXXXXXXXSGGRMGGRXXFDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSRFSRDSHDDXXXXGAYRRPGAGSPEARASPLARPSGGGGFKGGRDSSTSPTAASLSKMSIKEPK--KEVAAXXXXXXXXXXXXXXXXXXXXXEPKEDPVEVARASAAEALASGKRGKDLKEFVLAQEKRTTAGALLAAALEGTASPEDMKWMGKDEFGPALTALSTGKDSTQQQMGMIYAVVAKCHQLGFPKIGGAAVVQTIFMGMYNDDLCEEEAFIEWKDDVDSTAEGRMKAVMQTTPWFVWLESVEEEEDEDE 638
BLAST of mRNA_A-nodosum_M_contig10.11.1 vs. uniprot
Match: A0A485K315_9STRA (Aste57867_175 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K315_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 1.180e-11 Identity = 46/149 (30.87%), Postives = 79/149 (53.02%), Query Frame = 1 Query: 1702 LASGKRGTELKEFVMTQEKRTTAGALLAAALK--DVATPQDMKWARQEEFGAAL-VALSADNTEEQVGIIYAVVGKCHE-MGFPKETNGAVVQTIFMGMYNCDLCEEEAFIEWKDDVDSTAEGRMKAVMQTTPWFFWLVSVEEDED*SE 2136
LA+ K+G +L + TQ K T ++A L + + KW +E+GA L + + + ++Q+ ++A+ HE G +++ F +Y D+ +EAFIE+K DVD T G+M+A+++T+ W WL S E +D E
Sbjct: 316 LATNKKGQDLAKAAKTQLKGVTPAVVMAQVLSHNEESAISSSKWLTPDEYGALLSLTVGSAGVKDQLKALFALQLFMHEHRGREGNRTKGMMEMAFKALYAFDIIADEAFIEYKYDVDDTTAGKMQAIIETSEWLSWLESYEPSDDEEE 464
BLAST of mRNA_A-nodosum_M_contig10.11.1 vs. uniprot
Match: A0A6G0WCB0_9STRA (W2 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WCB0_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 3.740e-11 Identity = 49/155 (31.61%), Postives = 80/155 (51.61%), Query Frame = 1 Query: 1687 SAEEALASGKRGTELKEFVMTQEKRTTAGALLAAAL--KDVATPQDMKWARQEEFGAAL-VALSADNTEEQVGIIYAVVGKCHE-MGFPKETNGAVVQTIFMGMYNCDLCEEEAFIEWKDDVDSTAEGRMKAVMQTTPWFFWLVSVE-EDED*SE 2136
+ ++ LASGK+G L + K T ++A L + KW +E+G L V + + + +EQ+ +YA+ HE G +++ F +Y D+ +EAFIE+K DV+ T G+M+A+++T+ W WL S E DED E
Sbjct: 315 AVKKVLASGKKGEALAAVAKKELKGVTPAVVMAEVLAHNEETAISSSKWLTPDEYGQFLEVTIGSASVKEQLKALYALQLFMHEHRGREGNRTKGMMEMAFKALYAFDIVADEAFIEYKYDVEDTTAGKMQAIIETSEWLSWLESYEGSDEDEEE 469
BLAST of mRNA_A-nodosum_M_contig10.11.1 vs. uniprot
Match: A0A4C1T1S0_EUMVA (Eukaryotic translation initiation factor 4 gamma 2 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1T1S0_EUMVA) HSP 1 Score: 77.4 bits (189), Expect = 1.380e-10 Identity = 38/100 (38.00%), Postives = 54/100 (54.00%), Query Frame = 1 Query: 1837 EEFGAALVALSADNTEEQVGIIYAVVGKCHEMGFPKETNGAVVQTIFMGMYNCDLCEEEAFIEWKDDVDSTAEGRMKAVMQTTPWFFWLVSVEEDED*SE 2136
E + L AL E Q+ +YAV HE G+PK ++ FM +YN ++CEEEAF+ W++DV G+ +A+ Q W WL E DED +E
Sbjct: 877 EAYAPLLTALVEGRAELQLAAVYAVQVHAHEHGYPK----GLLLRWFMYLYNLEVCEEEAFLRWREDVTDAYPGKGEALFQVNAWLTWLQQQESDEDEAE 972
BLAST of mRNA_A-nodosum_M_contig10.11.1 vs. uniprot
Match: A0A835YLD9_9STRA (W2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLD9_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 9.680e-10 Identity = 28/64 (43.75%), Postives = 41/64 (64.06%), Query Frame = 1 Query: 1924 HEMGFPKETNGAVVQTIFMGMYNCDLCEEEAFIEWKDDVDSTAEGRMKAVMQTTPWFFWLVSVE 2115
HE GFPK +VQT+F + ++C+E+A+ EWKDDVD GR + ++QT +F WL + E
Sbjct: 4 HEKGFPKTEKDNMVQTLFTLLNIKEICDEDAYAEWKDDVDDATPGRKETIVQTLKFFEWLEAEE 67
BLAST of mRNA_A-nodosum_M_contig10.11.1 vs. uniprot
Match: A0A7R8ZHD9_9CRUS (Hypothetical protein n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8ZHD9_9CRUS) HSP 1 Score: 72.0 bits (175), Expect = 5.260e-9 Identity = 32/98 (32.65%), Postives = 55/98 (56.12%), Query Frame = 1 Query: 1843 FGAALVALSADNTEEQVGIIYAVVGKCHEMGFPKETNGAVVQTIFMGMYNCDLCEEEAFIEWKDDVDSTAEGRMKAVMQTTPWFFWLVSVEEDED*SE 2136
F + L + +NT Q+ +YAV CH + FPK + F+ +Y+ ++ EE+AF++W++D+++ G+ K + Q W WL E DE+ SE
Sbjct: 621 FQSLLRSFIGNNTSLQLSALYAVQVFCHSLDFPK----GMFLRWFVNLYDLEIIEEDAFLQWREDLNADFPGKQKGLFQVNQWLMWLQEAESDEEGSE 714
BLAST of mRNA_A-nodosum_M_contig10.11.1 vs. uniprot
Match: A0A3R6ZX22_9STRA (W2 domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6ZX22_9STRA) HSP 1 Score: 67.8 bits (164), Expect = 1.030e-8 Identity = 45/145 (31.03%), Postives = 77/145 (53.10%), Query Frame = 1 Query: 1669 TEVARASAEEALASGKRGTELKEFVMTQEKRTTAGALLAAALK--DVATPQDMKWARQEEFGAALVA-LSADNTEEQVGIIYAVVGKCHE-MGFPKETNGAVVQTIFMGMYNCDLCEEEAFIEWKDDVDSTAEGRMKAVMQTTPW 2091
TEV RA LA+ K+G E+ + + +A ++A LK + KW +E+GA L A + +++EQ+ +YA+ HE G +++ F +Y D+ +EAFIE+K DV+ T G+M+A+++T+ W
Sbjct: 75 TEVVRA----LLATTKKGQEIVKAGKASLQGVSAAVVMAEVLKHNEETAISSSKWLTPDEYGALLSATVGVASSKEQLKALYALQLFMHEHRGREGNRTKGMMELAFKALYAFDIVADEAFIEYKYDVEDTTAGKMQAIIETSEW 215
BLAST of mRNA_A-nodosum_M_contig10.11.1 vs. uniprot
Match: UPI001F91DFF4 (Uncharacterized protein n=1 Tax=Spodoptera exigua TaxID=7107 RepID=UPI001F91DFF4) HSP 1 Score: 65.5 bits (158), Expect = 1.200e-8 Identity = 31/100 (31.00%), Postives = 52/100 (52.00%), Query Frame = 1 Query: 1837 EEFGAALVALSADNTEEQVGIIYAVVGKCHEMGFPKETNGAVVQTIFMGMYNCDLCEEEAFIEWKDDVDSTAEGRMKAVMQTTPWFFWLVSVEEDED*SE 2136
E + L AL + Q+ +YAV H +PK ++ FM +YN ++CEE+AF+ W++DV G+ +A+ Q W WL E +++ +E
Sbjct: 54 EAYAPLLTALLEGQPQLQLAAVYAVQVHAHHHRYPK----GMLLRWFMYLYNLEVCEEDAFLRWREDVTDAYPGKGEALFQVNTWLTWLQQQESEDEEAE 149
BLAST of mRNA_A-nodosum_M_contig10.11.1 vs. uniprot
Match: A0A2G8JPB4_STIJA (Dap5 protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8JPB4_STIJA) HSP 1 Score: 70.9 bits (172), Expect = 1.260e-8 Identity = 38/131 (29.01%), Postives = 66/131 (50.38%), Query Frame = 1 Query: 1744 MTQEKRTTAGALLAAALKDVATPQDMKWARQEEFGAALVALSADNTEEQVGIIYAVVGKCHEMGFPKETNGAVVQTIFMGMYNCDLCEEEAFIEWKDDVDSTAEGRMKAVMQTTPWFFWLVSVEEDED*SE 2136
+TQE TT + A+ T Q+ + A E+F L + + Q+ +Y++ C+ FPK ++ F+ Y+ ++CEEE+F+ WK+D+ G+ KA+ Q W WL + EE++ E
Sbjct: 655 VTQE--TTLSPNIDPAILPEKTLQEKEKALLEKFSPVLKKFLHEKPKVQLCALYSLQTHCYNNNFPK----GMLLRFFINFYDMEICEEESFMHWKEDITDEFPGKGKALFQVNQWLTWLATAEEEDSEEE 779
BLAST of mRNA_A-nodosum_M_contig10.11.1 vs. uniprot
Match: A0A2G8LCK2_STIJA (Dap5 protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8LCK2_STIJA) HSP 1 Score: 70.9 bits (172), Expect = 1.410e-8 Identity = 38/131 (29.01%), Postives = 66/131 (50.38%), Query Frame = 1 Query: 1744 MTQEKRTTAGALLAAALKDVATPQDMKWARQEEFGAALVALSADNTEEQVGIIYAVVGKCHEMGFPKETNGAVVQTIFMGMYNCDLCEEEAFIEWKDDVDSTAEGRMKAVMQTTPWFFWLVSVEEDED*SE 2136
+TQE TT + A+ T Q+ + A E+F L + + Q+ +Y++ C+ FPK ++ F+ Y+ ++CEEE+F+ WK+D+ G+ KA+ Q W WL + EE++ E
Sbjct: 851 VTQE--TTLSPNIDPAILPEKTLQEKEKALLEKFSPVLKKFLHEKPKVQLCALYSLQTHCYNNNFPK----GMLLRFFINFYDMEICEEESFMHWKEDITDEFPGKGKALFQVNQWLTWLATAEEEDSEEE 975 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig10.11.1 >prot_A-nodosum_M_contig10.11.1 ID=prot_A-nodosum_M_contig10.11.1|Name=mRNA_A-nodosum_M_contig10.11.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=710bp MSKKGKVKMGLGDFLGSQAAAASQPVKGRILPSGPDPNRDPDERRGGGGRback to top mRNA from alignment at A-nodosum_M_contig10:105552..109925+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig10.11.1 ID=mRNA_A-nodosum_M_contig10.11.1|Name=mRNA_A-nodosum_M_contig10.11.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4374bp|location=Sequence derived from alignment at A-nodosum_M_contig10:105552..109925+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig10:105552..109925+ >mRNA_A-nodosum_M_contig10.11.1 ID=mRNA_A-nodosum_M_contig10.11.1|Name=mRNA_A-nodosum_M_contig10.11.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=2130bp|location=Sequence derived from alignment at A-nodosum_M_contig10:105552..109925+ (Ascophyllum nodosum dioecious)back to top |