mRNA_17032 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|132353
Unique NamemRNA_17032
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|132353 vs. uniprot
Match: A0A835ZFX1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFX1_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 2.830e-17
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 1 
Query:    1 NVCRFAAEGGQLEGLQWLRRTGSTWNSFTCSXXXXXXXXXXXXXXXANGC 150
            NVCRFAAEGGQLEGLQWLRRTGSTWNSFTCSXXXXXXXXXXXXXXXANGC
Sbjct:    1 NVCRFAAEGGQLEGLQWLRRTGSTWNSFTCSXXXXXXXXXXXXXXXANGC 50
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BLAST of jgi.p|Trimin1|132353 vs. uniprot
Match: A0A836C8C2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8C2_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.660e-8
Identity = 23/29 (79.31%), Postives = 25/29 (86.21%), Query Frame = 1 
Query:    4 VCRFAAEGGQLEGLQWLRRTGSTWNSFTC 90
            VC FAAEGGQLE LQWLRRTGS W+ +TC
Sbjct:    3 VCSFAAEGGQLEALQWLRRTGSAWDEYTC 31
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|132353 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835ZFX1_9STRA2.830e-17100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836C8C2_9STRA2.660e-879.31Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_165contigContig_165:32923..33072 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|132353|gw1.165.7.1
Hectar predicted targeting categoryno signal peptide or anchor
TranscriptId132675
TrackFilteredModels1
ProteinId132353
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|132353gene_17032Tribonema minus UTEX_B_3156 geneContig_165 32923..33072 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17032_1exon_17032_1Tribonema minus UTEX_B_3156 exonContig_165 32923..33072 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17032CDS_17032Tribonema minus UTEX_B_3156 CDSContig_165 32923..33072 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|132353Trimin1|132353|gw1.165.7.1Tribonema minus UTEX_B_3156 polypeptideContig_165 32923..33072 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17032 ID=mRNA_17032|Name=jgi.p|Trimin1|132353|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=150bp|location=Sequence derived from alignment at Contig_165:32923..33072+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AACGTATGCCGCTTTGCCGCCGAGGGAGGGCAGCTGGAAGGGCTGCAGTG
GCTGCGCCGAACTGGCAGCACCTGGAACAGTTTCACATGCTCGGCTGCGG
CGGAGCAGGGACACTTGGAGGTGCTGCAGTGGGCGCGCGCCAACGGCTGC
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protein sequence of jgi.p|Trimin1|132353

>Trimin1|132353|gw1.165.7.1 ID=Trimin1|132353|gw1.165.7.1|Name=jgi.p|Trimin1|132353|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=50bp
NVCRFAAEGGQLEGLQWLRRTGSTWNSFTCSAAAEQGHLEVLQWARANGC
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mRNA from alignment at Contig_165:32923..33072+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17032 ID=mRNA_17032|Name=jgi.p|Trimin1|132353|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=150bp|location=Sequence derived from alignment at Contig_165:32923..33072+ (Tribonema minus UTEX_B_3156 )
AACGTATGCCGCTTTGCCGCCGAGGGAGGGCAGCTGGAAGGGCTGCAGTG
GCTGCGCCGAACTGGCAGCACCTGGAACAGTTTCACATGCTCGGCTGCGG
CGGAGCAGGGACACTTGGAGGTGCTGCAGTGGGCGCGCGCCAACGGCTGC
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Coding sequence (CDS) from alignment at Contig_165:32923..33072+

>mRNA_17032 ID=mRNA_17032|Name=jgi.p|Trimin1|132353|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=150bp|location=Sequence derived from alignment at Contig_165:32923..33072+ (Tribonema minus UTEX_B_3156 )
AACGTATGCCGCTTTGCCGCCGAGGGAGGGCAGCTGGAAGGGCTGCAGTG
GCTGCGCCGAACTGGCAGCACCTGGAACAGTTTCACATGCTCGGCTGCGG
CGGAGCAGGGACACTTGGAGGTGCTGCAGTGGGCGCGCGCCAACGGCTGC
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