mRNA_13109 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|353396
Unique NamemRNA_13109
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|353396 vs. uniprot
Match: A0A835Z6Z3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6Z3_9STRA)

HSP 1 Score: 262 bits (669), Expect = 1.550e-85
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 2 
Query:  401 MAAMGAEPRQVDRVRAAHGFDTSAKQQRGMSMLSRGVPGRCQSSSGAVNRGGGEALVAGDAVGGDDCSDDDYSGSGDEYSIHSMEAGYADVNNGSRDSVVDMGEGSEASXXXXXXXXXXXXXDSSDSAYVCSDSGAPVRGGARDESSVADGSALVP 868
            MAAMGAEPRQVDRVRAAHGFDTSAKQQRGMSMLSRGVPGRCQSSSGAVNRGGGEALVAGDAVGGDDCSDDDYSGSGDEYSIHSMEAGYADVNNGSRDSVVDMGEGSEASXXXXXXXXXXXXXDSSDSAYVCSDSGAPVRGGARDESSVADGSALVP
Sbjct:    1 MAAMGAEPRQVDRVRAAHGFDTSAKQQRGMSMLSRGVPGRCQSSSGAVNRGGGEALVAGDAVGGDDCSDDDYSGSGDEYSIHSMEAGYADVNNGSRDSVVDMGEGSEASXXXXXXXXXXXXXDSSDSAYVCSDSGAPVRGGARDESSVADGSALVP 156
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|353396 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z6Z3_9STRA1.550e-85100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_161contigContig_161:78434..79398 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|353396|estExt_Genemark1.C_Ctg_1610017
Hectar predicted targeting categoryother localisation
TranscriptId353718
TrackFilteredModels1
ProteinId353396
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353396gene_13109Tribonema minus UTEX_B_3156 geneContig_161 78434..79398 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13109_2exon_13109_2Tribonema minus UTEX_B_3156 exonContig_161 78434..78780 -
exon_13109_1exon_13109_1Tribonema minus UTEX_B_3156 exonContig_161 78863..79398 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_13109UTR3_13109Tribonema minus UTEX_B_3156 three_prime_UTRContig_161 78434..78445 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13109CDS_13109Tribonema minus UTEX_B_3156 CDSContig_161 78863..78998 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_13109UTR5_13109Tribonema minus UTEX_B_3156 five_prime_UTRContig_161 78999..79398 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|353396Trimin1|353396|estExt_Genemark1.C_Ctg_1610017Tribonema minus UTEX_B_3156 polypeptideContig_161 78446..78998 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13109 ID=mRNA_13109|Name=jgi.p|Trimin1|353396|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=883bp|location=Sequence derived from alignment at Contig_161:78434..79398- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGCAATCGAGAGCACGGCGCAGTTAGTGGAGCTATCGCAGAAGCAGGAG
CAGCAGGAAGAACGACAGCGCTACTAGCAACAGGACGACAACAGCAGCAC
TTGGGGCTTGGACTAGAAGAAAAGCAGTATGACAATTCAGCTGCAAGATG
ACAACGGTATCAAAATTCGAAAATTGGAAGAGGGCGTTCAGCAGCACCTG
GCAAGGCTGCGTGAGCTGGAGCAGGTAATCGGGCGGCAGCGAGTCGCGAG
CGAACAGCATTACGGAAGCTTGAGGAGGAGAACAGGCAGCAGAGGGTCAC
AATCGAAAAGCAGCGGCGCGCTTTGGTGGCCTGCGAGAGGCGGCGGCATC
CTGACGCTGCGAGTTCACAGTGCCGAGACACTACGCAGCAGCAGGCTGGG
ATGGCAGCGATGGGAGCGGAACCGCGGCAGGTCGACAGGGTGCGGGCGGC
GCACGGATTTGACACCAGCGCAAAGCAGCAGCGGGGCATGAGCATGCTGA
GCAGGGGCGTTCCTGGCCGCTGCCAGTCCTCATCCGGGGCTGTCAACAGA
GGGGGCGGGGAGGCGTTGGTGGCCGGCGACGCTGTCGGAGGCGATGACTG
CAGCGACGACGACTACAGCGGCAGCGGCGATGAGTACAGCATCCACTCGA
TGGAGGCCGGTTACGCTGACGTCAACAATGGAAGTCGAGACTCGGTTGTG
GACATGGGCGAGGGAAGTGAGGCCAGCAGTAACGACGCAGGTGGCGGCGC
CGGCGGCAACGCCTCGGACTCCTCCGACAGCGCCTACGTCTGCAGCGACT
CCGGAGCACCTGTCAGAGGCGGTGCGCGCGACGAGAGCTCGGTGGCTGAT
GGCAGCGCGCTGGTGCCATGACTTGTTGAATAC
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protein sequence of jgi.p|Trimin1|353396

>Trimin1|353396|estExt_Genemark1.C_Ctg_1610017 ID=Trimin1|353396|estExt_Genemark1.C_Ctg_1610017|Name=jgi.p|Trimin1|353396|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=157bp
MAAMGAEPRQVDRVRAAHGFDTSAKQQRGMSMLSRGVPGRCQSSSGAVNR
GGGEALVAGDAVGGDDCSDDDYSGSGDEYSIHSMEAGYADVNNGSRDSVV
DMGEGSEASSNDAGGGAGGNASDSSDSAYVCSDSGAPVRGGARDESSVAD
GSALVP*
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mRNA from alignment at Contig_161:78434..79398-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13109 ID=mRNA_13109|Name=jgi.p|Trimin1|353396|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=965bp|location=Sequence derived from alignment at Contig_161:78434..79398- (Tribonema minus UTEX_B_3156 )
CAGCAATCGAGAGCACGGCGCAGTTAGTGGAGCTATCGCAGAAGCAGGAG
CAGCAGGAAGAACGACAGCGCTACTAGCAACAGGACGACAACAGCAGCAC
TTGGGGCTTGGACTAGAAGAAAAGCAGTATGACAATTCAGCTGCAAGATG
ACAACGGTATCAAAATTCGAAAATTGGAAGAGGGCGTTCAGCAGCACCTG
GCAAGGCTGCGTGAGCTGGAGCAGGTAATCGGGCGGCAGCGAGTCGCGAG
CGAACAGCATTACGGAAGCTTGAGGAGGAGAACAGGCAGCAGAGGGTCAC
AATCGAAAAGCAGCGGCGCGCTTTGGTGGCCTGCGAGAGGCGGCGGCATC
CTGACGCTGCGAGTTCACAGTGCCGAGACACTACGCAGCAGCAGGCTGGG
ATGGCAGCGATGGGAGCGGAACCGCGGCAGGTCGACAGGGTGCGGGCGGC
GCACGGATTTGACACCAGCGCAAAGCAGCAGCGGGGCATGAGCATGCTGA
GCAGGGGCGTTCCTGGCCGCTGCCAGTCCTCATCCGGTACCGTCGGGTGG
GGAATGTGAAGCGCAGCCGCCGATGAAGTCTGCCAGCGGCAGTGGCGATG
ACGGCAGCGCTCATGCAGGGGCTGTCAACAGAGGGGGCGGGGAGGCGTTG
GTGGCCGGCGACGCTGTCGGAGGCGATGACTGCAGCGACGACGACTACAG
CGGCAGCGGCGATGAGTACAGCATCCACTCGATGGAGGCCGGTTACGCTG
ACGTCAACAATGGAAGTCGAGACTCGGTTGTGGACATGGGCGAGGGAAGT
GAGGCCAGCAGTAACGACGCAGGTGGCGGCGCCGGCGGCAACGCCTCGGA
CTCCTCCGACAGCGCCTACGTCTGCAGCGACTCCGGAGCACCTGTCAGAG
GCGGTGCGCGCGACGAGAGCTCGGTGGCTGATGGCAGCGCGCTGGTGCCA
TGACTTGTTGAATAC
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Coding sequence (CDS) from alignment at Contig_161:78434..79398-

>mRNA_13109 ID=mRNA_13109|Name=jgi.p|Trimin1|353396|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=471bp|location=Sequence derived from alignment at Contig_161:78434..79398- (Tribonema minus UTEX_B_3156 )
ATGGCAGCGATGGGAGCGGAACCGCGGCAGGTCGACAGGGTGCGGGCGGC
GCACGGATTTGACACCAGCGCAAAGCAGCAGCGGGGCATGAGCATGCTGA
GCAGGGGCGTTCCTGGCCGCTGCCAGTCCTCATCCGGGGCTGTCAACAGA
GGGGGCGGGGAGGCGTTGGTGGCCGGCGACGCTGTCGGAGGCGATGACTG
CAGCGACGACGACTACAGCGGCAGCGGCGATGAGTACAGCATCCACTCGA
TGGAGGCCGGTTACGCTGACGTCAACAATGGAAGTCGAGACTCGGTTGTG
GACATGGGCGAGGGAAGTGAGGCCAGCAGTAACGACGCAGGTGGCGGCGC
CGGCGGCAACGCCTCGGACTCCTCCGACAGCGCCTACGTCTGCAGCGACT
CCGGAGCACCTGTCAGAGGCGGTGCGCGCGACGAGAGCTCGGTGGCTGAT
GGCAGCGCGCTGGTGCCATGA
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