mRNA_2925 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|347783
Unique NamemRNA_2925
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|347783 vs. uniprot
Match: A0A836CM55_9STRA (Ribosome recycling factor domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM55_9STRA)

HSP 1 Score: 620 bits (1600), Expect = 3.050e-221
Identity = 335/335 (100.00%), Postives = 335/335 (100.00%), Query Frame = 2 
Query:   29 MRASAARAVATRLRHVSGLAGRALAADAAAATHLNSKGFTTVAAVSAAPHLPATRIVDRKHRMGFAMEPQQPALLLVRRFKHGSLGKKGKKAGKTSRAELYNARPAAAAESIPLDDESSVSDAEPEESEEEEPADQDYATVDDCAPLDALSARLDRVLEGLKKDLAVLRGGRVDPAMFDHLTVHSYGQEGPLSSVAQVSAKGPQLLVLTCYDPATAPAVVVAVRDSGMNLNPQLDGNKGGAQRREACTPVLVPIPKMSHETRESLVKVANKATEKAKVHMRGIRHKVLERLKKHKANFSEDDVHRRHKEIDTKIAAMEAKCAAALDAKKKDILSA 1033
            MRASAARAVATRLRHVSGLAGRALAADAAAATHLNSKGFTTVAAVSAAPHLPATRIVDRKHRMGFAMEPQQPALLLVRRFKHGSLGKKGKKAGKTSRAELYNARPAAAAESIPLDDESSVSDAEPEESEEEEPADQDYATVDDCAPLDALSARLDRVLEGLKKDLAVLRGGRVDPAMFDHLTVHSYGQEGPLSSVAQVSAKGPQLLVLTCYDPATAPAVVVAVRDSGMNLNPQLDGNKGGAQRREACTPVLVPIPKMSHETRESLVKVANKATEKAKVHMRGIRHKVLERLKKHKANFSEDDVHRRHKEIDTKIAAMEAKCAAALDAKKKDILSA
Sbjct:    1 MRASAARAVATRLRHVSGLAGRALAADAAAATHLNSKGFTTVAAVSAAPHLPATRIVDRKHRMGFAMEPQQPALLLVRRFKHGSLGKKGKKAGKTSRAELYNARPAAAAESIPLDDESSVSDAEPEESEEEEPADQDYATVDDCAPLDALSARLDRVLEGLKKDLAVLRGGRVDPAMFDHLTVHSYGQEGPLSSVAQVSAKGPQLLVLTCYDPATAPAVVVAVRDSGMNLNPQLDGNKGGAQRREACTPVLVPIPKMSHETRESLVKVANKATEKAKVHMRGIRHKVLERLKKHKANFSEDDVHRRHKEIDTKIAAMEAKCAAALDAKKKDILSA 335
[Close]
BLAST of jgi.p|Trimin1|347783 vs. uniprot
Match: A0A6H5K1Z6_9PHAE (RRF domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K1Z6_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 2.110e-41
Identity = 93/195 (47.69%), Postives = 125/195 (64.10%), Query Frame = 2 
Query:  446 TVDDCAPLDALSARLDRVLEGLKKDLAVLRGGRVDPAMFDHLTVHSYGQEGPLSSVAQVSAKGPQLLVLTCYDPATAPAVVVAVRDSGMNLNPQLDGNKGGAQRREACTPVLVPIPKMSHETRESLVKVANKATEKAKVHMRGIRHKVLERLKKHKANFSEDDVHRRHKEIDTKIAAMEAKCAAALDAKKKDILS 1030
            ++DD A +    AR D+VL+GL ++   LRGG+ DP M D++ V SYG    L+SVAQ S KGPQL++L+ YDP    A+  AVR+ GM LNP  +G             V VPIPK + E+RE++ KVA K  EK+KV +RGIRHK+L+++KK K +F EDDVH R KEID      EA  A+ L+ KK +IL+
Sbjct:  114 SLDDIAGIPESKARFDKVLQGLTRNFQGLRGGKTDPGMLDNVKVESYGSMTNLASVAQASMKGPQLIILSVYDPGMTKAIEDAVRECGMGLNPYSEGQGQ----------VHVPIPKPTKESREAVAKVAAKHAEKSKVVVRGIRHKILDQIKKKKDSFPEDDVHMRIKEIDKCTKDAEAGIASMLEKKKAEILT 298
[Close]
BLAST of jgi.p|Trimin1|347783 vs. uniprot
Match: A0A6V1LRG3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1LRG3_HETAK)

HSP 1 Score: 133 bits (334), Expect = 6.330e-32
Identity = 82/191 (42.93%), Postives = 112/191 (58.64%), Query Frame = 2 
Query:  461 APLDALSARLDRVLEGLKKDLAVLRGGRVDPAMFDHLTVHSYGQEGPLSSVAQVSAKGPQLLVLTCYDPATAPAVVVAVRDSGMNLNPQLDGNKGGAQRREACTPVLVPIPKMSHETRESLVKVANKATEKAKVHMRGIRHKVLERLKKHKANFSEDDVHRRHKEIDTKIAAMEAKCAAALDAKKKDILSA 1033
            A L+ +  ++ R ++ L KDL  LR GR DPAMFDHL V +YGQ  PLS+VA V+ +GPQLLV+  YDP    AV  A+R+ GM LNPQ    +GGA        + VP+PK S E RE L ++A +  EK K ++R  R   ++  KK  A   ED+  R  KEID    A     +  +D K+K++L+A
Sbjct:   95 ADLEQVDQKMGRYIQALDKDLRTLRAGRADPAMFDHLQVDAYGQSAPLSAVADVAPRGPQLLVVNVYDPQLKGAVDTAIRECGMGLNPQ--ALEGGA--------LSVPVPKTSKEKREKLARMAKQQGEKTKQNVRNARRSAIDETKK--AGLPEDESKRLVKEIDALCDAKLKAVSDLIDGKQKELLNA 273
[Close]
BLAST of jgi.p|Trimin1|347783 vs. uniprot
Match: A0A7S1C1H7_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C1H7_9STRA)

HSP 1 Score: 115 bits (288), Expect = 2.680e-26
Identity = 72/186 (38.71%), Postives = 106/186 (56.99%), Query Frame = 2 
Query:  473 ALSARLDRVLEGLKKDLAVLRGGRVDPAMFDHLTVHSYGQEGPLSSVAQVSAKGPQLLVLTCYDPATAPAVVVAVRDSGMNLNPQLDGNKGGAQRREACTPVLVPIPKMSHETRESLVKVANKATEKAKVHMRGIRHKVLERLKKHKANFSEDDVHRRHKEIDTKIAAMEAKCAAALDAKKKDILS 1030
            A +A +D  ++ L+++ A LR G   P+M DH+ V +YG   PL  +AQV+A  P L+V   +DP+T+ AV  A+R+SG+NLNPQ DG             V VPIPK + ETRES  K+A K  E+ K+ +R +R + +  +K+ +   SEDDV R  KE+     A      A    KK+ I++
Sbjct:   24 AWAADMDSHVDWLRREYATLRVGAATPSMLDHVMVDAYGGTVPLPQLAQVAAPSPNLIVCNVFDPSTSSAVAEAIRNSGLNLNPQEDG-----------AVVKVPIPKTTRETRESTAKIAAKLAEETKLAVRRVRQRAMAVIKE-QTGVSEDDVFRLGKEVQAATDAAVDAVTAEFTKKKESIMN 197
[Close]
BLAST of jgi.p|Trimin1|347783 vs. uniprot
Match: A0A437MJH9_9PROT (Ribosome-recycling factor n=2 Tax=Rhodovarius TaxID=268408 RepID=A0A437MJH9_9PROT)

HSP 1 Score: 112 bits (279), Expect = 3.940e-25
Identity = 77/198 (38.89%), Postives = 102/198 (51.52%), Query Frame = 2 
Query:  443 ATVDDCAPLDALSARLDRVLEGLKKDLAVLRGGRVDPAMFDHLTVHSYGQEGPLSSVAQVSAKGPQLLVLTCYDPATAPAVVVAVRDSGMNLNPQLDGNKGGAQRREACTPVLVPIPKMSHETRESLVKVANKATEKAKVHMRGIRHKVLERLK--KHKANFSEDDVHRRHKEIDTKIAAMEAKCAAALDAKKKDILS 1030
            A  D  A  + L  R+D  +E LKK+   LR GR  PA+ + + V  YG   PL+ VA VS  GP LL +  YD     AV +A+RDSG+NLNPQ +G             + VP+P ++ E R  L K A K  E AK+ +R +R   +E+ +  K K+  SEDD  R  KE+ T       K  AA   K KDI S
Sbjct:    3 APADPKALKEDLRRRMDSTMETLKKEFQGLRTGRASPALLEPIRVEIYGAVSPLNQVANVSVGGPGLLNVQVYDRGQVKAVEIAIRDSGLNLNPQTEGQT-----------IRVPLPPLTTERRNELSKQAAKYAEGAKIAVRNVRRDGMEQAQGWKKKSEISEDDAKRLEKEVQTLTDDYVKKVDAAFAEKDKDIKS 189
[Close]
BLAST of jgi.p|Trimin1|347783 vs. uniprot
Match: UPI001CFEA812 (ribosome recycling factor n=1 Tax=Roseicella sp. GB24 TaxID=2883479 RepID=UPI001CFEA812)

HSP 1 Score: 112 bits (279), Expect = 3.940e-25
Identity = 65/157 (41.40%), Postives = 93/157 (59.24%), Query Frame = 2 
Query:  476 LSARLDRVLEGLKKDLAVLRGGRVDPAMFDHLTVHSYGQEGPLSSVAQVSAKGPQLLVLTCYDPATAPAVVVAVRDSGMNLNPQLDGNKGGAQRREACTPVLVPIPKMSHETRESLVKVANKATEKAKVHMRGIRHKVLERLKKH----KANFSEDD 934
            L+ R+D  +E LKK+ + LR GR  PA+ + + V +YGQE PLS VA VS  GP +L +  +D +   AV VA+RDSG+ LNPQ +G             + VP+P ++ E R  L+K A+K  E AKV +RG+R   +E++K      KA  S+DD
Sbjct:   12 LTRRMDGAIEMLKKEFSGLRAGRASPALLEPVRVEAYGQEQPLSQVANVSVSGPAMLSVQVWDKSVVKAVEVAIRDSGLGLNPQTEGQT-----------LRVPLPPLTQERRNELIKAAHKYAEGAKVAVRGVRRDGMEQIKAQEKDKKAPISQDD 157
[Close]
BLAST of jgi.p|Trimin1|347783 vs. uniprot
Match: A0A7S2EQG4_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EQG4_TRICV)

HSP 1 Score: 114 bits (286), Expect = 6.990e-25
Identity = 77/191 (40.31%), Postives = 104/191 (54.45%), Query Frame = 2 
Query:  470 DALSARLDRVLEGLKKDLAVLRGGRVDPAMFDHLTVHSYGQEGPLSSVAQVSAKGPQLLVLTCYDPATAPAVVVAVRDSGMNLNPQLDGNKGGAQRREACTPVLVPIPKMSHETRESLVKVANKATEKAKVHMRGIRHKVLERLKKHKAN----FSEDDVHRRHKEIDTKIAAMEAKCAAALDAKKKDILS 1030
            D + +R+DRV+    +    +RG    P +FD + V +YG   PLSSVAQV  +GP   +L+C+DP TA AV  AVRDSGM  NP++D   G  +         VPIPK+S ETR SLVK   KA E A+  +R IR    + +KK K       S+DD  R  KEID        +   A + KK D+++
Sbjct:  131 DDVKSRMDRVVSATSESFRSVRGSEPTPELFDSIPVRAYGTLAPLSSVAQVVIQGPTRALLSCFDPETAGAVRDAVRDSGMGFNPRIDETGGTVE---------VPIPKVSMETRLSLVKQLGKAAEAARQRIRRIRRAAQDVVKKGKDGKLDGVSKDDAFRVAKEIDAVTEKAIEELNDAYERKKDDVMA 312
[Close]
BLAST of jgi.p|Trimin1|347783 vs. uniprot
Match: UPI001A067563 (Ribosome recycling factor n=1 Tax=Acetobacteraceae bacterium H6797 TaxID=2571211 RepID=UPI001A067563)

HSP 1 Score: 111 bits (277), Expect = 7.120e-25
Identity = 73/185 (39.46%), Postives = 100/185 (54.05%), Query Frame = 2 
Query:  476 LSARLDRVLEGLKKDLAVLRGGRVDPAMFDHLTVHSYGQEGPLSSVAQVSAKGPQLLVLTCYDPATAPAVVVAVRDSGMNLNPQLDGNKGGAQRREACTPVLVPIPKMSHETRESLVKVANKATEKAKVHMRGIRHKVLERLK--KHKANFSEDDVHRRHKEIDTKIAAMEAKCAAALDAKKKDI 1024
            LS R+D  LE LKK+ + LR GR  PA+ + + V +YG   PLS VA VS  GP +L +  +D +   AV VA+RDSG+ LNPQ +G           T + VP+P ++ E R  L K A K  E AKV  RG+R   +E +K  + K+   +DD  +   E+     A      AAL  K+KDI
Sbjct:   12 LSRRMDGALETLKKEFSGLRTGRASPALLEPIRVEAYGSNQPLSQVANVSVSGPSMLSVQVWDKSVTKAVEVAIRDSGLGLNPQAEG-----------TVIRVPLPPLTTERRNELAKTAAKYAEAAKVAARGVRRDGMETIKGWEKKSEVGKDDAAKWSDEVQKLTDATIKAIDAALAEKEKDI 185
[Close]
BLAST of jgi.p|Trimin1|347783 vs. uniprot
Match: UPI001BACEF9D (ribosome recycling factor n=2 Tax=Roseomonas TaxID=125216 RepID=UPI001BACEF9D)

HSP 1 Score: 108 bits (270), Expect = 7.090e-24
Identity = 70/187 (37.43%), Postives = 102/187 (54.55%), Query Frame = 2 
Query:  476 LSARLDRVLEGLKKDLAVLRGGRVDPAMFDHLTVHSYGQEGPLSSVAQVSAKGPQLLVLTCYDPATAPAVVVAVRDSGMNLNPQLDGNKGGAQRREACTPVLVPIPKMSHETRESLVKVANKATEKAKVHMRGIRHKVLERLKK----HKANFSEDDVHRRHKEIDTKIAAMEAKCAAALDAKKKDI 1024
            L+ R+D  +E L+K+ A LR GR  PA+ + + V +YG   PL+ VA +S  GP LLV+  +D +   AV VA+RDSG+ LNPQ +G             + VP+P ++ E R  LVK A+K  E ++V +RG+R   +ER+K      KA  SED+  R   E+         +    L  K+KDI
Sbjct:   12 LTRRMDGAIETLRKEFAGLRTGRASPALLEPVRVEAYGGNSPLNQVANISVGGPGLLVVQVFDRSLTKAVEVAIRDSGLGLNPQAEGQV-----------IRVPLPPLTQERRNDLVKTAHKYAEASRVAIRGVRRDGMERVKAMTADKKAPISEDEGKRTQDEVQKLTDQYIKQVDTLLAEKEKDI 187
[Close]
BLAST of jgi.p|Trimin1|347783 vs. uniprot
Match: UPI001BA5A89B (Ribosome recycling factor n=1 Tax=Leptolyngbya sp. 15MV TaxID=2819933 RepID=UPI001BA5A89B)

HSP 1 Score: 108 bits (269), Expect = 9.760e-24
Identity = 72/187 (38.50%), Postives = 100/187 (53.48%), Query Frame = 2 
Query:  476 LSARLDRVLEGLKKDLAVLRGGRVDPAMFDHLTVHSYGQEGPLSSVAQVSAKGPQLLVLTCYDPATAPAVVVAVRDSGMNLNPQLDGNKGGAQRREACTPVLVPIPKMSHETRESLVKVANKATEKAKVHMRGIRHKVLERLKK----HKANFSEDDVHRRHKEIDTKIAAMEAKCAAALDAKKKDI 1024
            L  R+D  +E LKK+ A LR GR  PA+ + + V +YG   PL+ VA +S  GP LL +  +D +      VA+RDSG+ LNPQ +G             + VP+P ++ E R  L K A K TE A+V +RG+R   +E +K      KA  S+DDV R   E+     A   +  AAL  K+KDI
Sbjct:   12 LQRRMDGAMETLKKEFAGLRTGRASPALLEPIRVEAYGTVQPLNQVANISIAGPGLLSVQVWDKSVVKHAEVAIRDSGLGLNPQTEGQV-----------IRVPLPPLTQERRNELAKTAAKYTEAARVAVRGVRRDGMETVKAWEKDKKAEASQDDVKRWSDEVQKMTDAHIKQIDAALAEKEKDI 187
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347783 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CM55_9STRA3.050e-221100.00Ribosome recycling factor domain-containing protei... [more]
A0A6H5K1Z6_9PHAE2.110e-4147.69RRF domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6V1LRG3_HETAK6.330e-3242.93Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1C1H7_9STRA2.680e-2638.71Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A437MJH9_9PROT3.940e-2538.89Ribosome-recycling factor n=2 Tax=Rhodovarius TaxI... [more]
UPI001CFEA8123.940e-2541.40ribosome recycling factor n=1 Tax=Roseicella sp. G... [more]
A0A7S2EQG4_TRICV6.990e-2540.31Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
UPI001A0675637.120e-2539.46Ribosome recycling factor n=1 Tax=Acetobacteraceae... [more]
UPI001BACEF9D7.090e-2437.43ribosome recycling factor n=2 Tax=Roseomonas TaxID... [more]
UPI001BA5A89B9.760e-2438.50Ribosome recycling factor n=1 Tax=Leptolyngbya sp.... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_16contigContig_16:101789..106379 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|347783|estExt_Genemark1.C_Ctg_160015
KEGG TC1.A.33.1
BRITEko00000,ko00001,ko00002,ko01009,ko03009,ko03012,ko03029,ko03041,ko03051,ko03110,ko04131,ko04147,ko04516
KEGG ModuleM00353,M00355
KEGG Pathwayko03040,ko04010,ko04141,ko04144,ko04213,ko04612,ko04915,ko05134,ko05145,ko05162,ko05164,ko05169,map03040,map04010,map04141,map04144,map04213,map04612,map04915,map05134,map05145,map05162,map05164,map05169
KEGG koko:K02838,ko:K03283
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0006996,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0019538,GO:0022411,GO:0032543,GO:0032790,GO:0032984,GO:0032988,GO:0034641,GO:0034645,GO:0043021,GO:0043023,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0070126,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:0140053,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008
Preferred nameRRF1
Descriptionribosomal large subunit binding
COG categoryJ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0233@1|root,KOG4759@2759|Eukaryota
Evalue7.72e-40
Seed ortholog2880.D7G7A5
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionRibosome recycling factor
Ec32 orthologEc-04_003560.1
TranscriptId348105
TrackFilteredModels1
ProteinId347783
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347783gene_2925Tribonema minus UTEX_B_3156 geneContig_16 101789..106379 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347783Trimin1|347783|estExt_Genemark1.C_Ctg_160015Tribonema minus UTEX_B_3156 polypeptideContig_16 101817..105962 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2925_1exon_2925_1Tribonema minus UTEX_B_3156 exonContig_16 101789..102081 +
exon_2925_2exon_2925_2Tribonema minus UTEX_B_3156 exonContig_16 102452..102716 +
exon_2925_3exon_2925_3Tribonema minus UTEX_B_3156 exonContig_16 103587..103770 +
exon_2925_4exon_2925_4Tribonema minus UTEX_B_3156 exonContig_16 103939..103971 +
exon_2925_5exon_2925_5Tribonema minus UTEX_B_3156 exonContig_16 104485..104568 +
exon_2925_6exon_2925_6Tribonema minus UTEX_B_3156 exonContig_16 104958..105053 +
exon_2925_7exon_2925_7Tribonema minus UTEX_B_3156 exonContig_16 105882..106379 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_2925UTR5_2925Tribonema minus UTEX_B_3156 five_prime_UTRContig_16 101789..101816 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2925CDS_2925Tribonema minus UTEX_B_3156 CDSContig_16 101817..102081 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_2925UTR3_2925Tribonema minus UTEX_B_3156 three_prime_UTRContig_16 105963..106379 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2925 ID=mRNA_2925|Name=jgi.p|Trimin1|347783|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1453bp|location=Sequence derived from alignment at Contig_16:101789..106379+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGATCTTGCGCGCAGTGTGGCGGTGAAAATGCGGGCATCAGCGGCCAGAG
CAGTTGCAACGCGGCTGCGGCATGTATCGGGACTCGCGGGGAGAGCGCTG
GCGGCTGACGCCGCTGCTGCCACGCACCTCAACAGCAAGGGCTTCACCAC
TGTTGCAGCCGTATCTGCCGCACCACACCTCCCTGCCACTCGCATAGTGG
ATCGCAAGCACCGCATGGGTTTTGCCATGGAGCCTCAGCAGCCAGCCCTG
CTGTTGGTGCGGCGATTTAAGCATGGCTCACTGGGAAAGAAGGGCAAAAA
AGCCGGCAAGACCTCCAGAGCCGAGCTCTACAACGCGCGCCCGGCGGCGG
CGGCAGAGAGCATACCCCTGGATGACGAATCGTCCGTCTCCGACGCCGAA
CCCGAGGAGAGCGAGGAGGAGGAGCCCGCGGATCAGGACTACGCCACCGT
GGACGACTGCGCCCCGCTGGACGCGCTGAGCGCGCGCCTCGACAGGGTGC
TGGAGGGGCTGAAGAAGGACCTCGCGGTGCTGCGCGGCGGGCGCGTGGAC
CCCGCCATGTTCGACCACCTCACGGTCCACTCGTACGGCCAGGAGGGTCC
GCTGAGCAGCGTGGCGCAGGTCTCCGCCAAGGGGCCGCAGCTCCTGGTGC
TCACGTGCTACGACCCGGCGACGGCGCCGGCGGTCGTGGTCGCCGTGCGC
GACAGCGGCATGAACCTCAATCCGCAGCTCGACGGCAACAAGGGCGGCGC
GCAGCGGCGCGAGGCGTGCACGCCAGTGCTGGTGCCAATACCGAAGATGA
GCCATGAGACGCGTGAGAGCCTCGTCAAAGTCGCCAACAAGGCCACCGAA
AAAGCCAAGGTGCACATGCGCGGCATCCGGCACAAGGTCCTGGAGCGTTT
GAAAAAGCATAAGGCCAACTTCAGCGAGGACGACGTGCACCGCAGACACA
AGGAGATCGACACCAAGATCGCCGCGATGGAGGCCAAGTGCGCGGCAGCG
CTCGACGCCAAGAAGAAGGACATACTGTCCGCCTAGCCCGCAGCTTCAGC
GACCACACGCATCTCCCAAGCACAAATATAGCGTGCAGTTGGCCCTGACA
TTGTGTCGGGGGGTCCTTCTACAGCTGGAGGGGCCCGACCGGAGCTGTTA
CAGTAATCTGTGATCGTCGTCAATCACAGCGGTGTGCCCCACCTAGGCAT
GTTGCTTGAGGCATCCGCTACTCCAGGGACACAAATATCACGCCTGCGAT
GCAATGTGCCTGCAGACCGTTGCTGGTAGATCACACATGCTGTCAGACCA
GACGCTCTGACACGCGCACGCAATCACAGACACTTGGCATGAGTCAGAGA
TACGATGTGGCGTCAGTGTCCGCGCGCAGCATTGCTCTGCGGCGATCCAG
CCTTCAGAGCCCTGACTTGGCCTAGGGCACATGAATACAGACATGTCTCA
CCA
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protein sequence of jgi.p|Trimin1|347783

>Trimin1|347783|estExt_Genemark1.C_Ctg_160015 ID=Trimin1|347783|estExt_Genemark1.C_Ctg_160015|Name=jgi.p|Trimin1|347783|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=336bp
MRASAARAVATRLRHVSGLAGRALAADAAAATHLNSKGFTTVAAVSAAPH
LPATRIVDRKHRMGFAMEPQQPALLLVRRFKHGSLGKKGKKAGKTSRAEL
YNARPAAAAESIPLDDESSVSDAEPEESEEEEPADQDYATVDDCAPLDAL
SARLDRVLEGLKKDLAVLRGGRVDPAMFDHLTVHSYGQEGPLSSVAQVSA
KGPQLLVLTCYDPATAPAVVVAVRDSGMNLNPQLDGNKGGAQRREACTPV
LVPIPKMSHETRESLVKVANKATEKAKVHMRGIRHKVLERLKKHKANFSE
DDVHRRHKEIDTKIAAMEAKCAAALDAKKKDILSA*
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mRNA from alignment at Contig_16:101789..106379+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2925 ID=mRNA_2925|Name=jgi.p|Trimin1|347783|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4591bp|location=Sequence derived from alignment at Contig_16:101789..106379+ (Tribonema minus UTEX_B_3156 )
GGATCTTGCGCGCAGTGTGGCGGTGAAAATGCGGGCATCAGCGGCCAGAG
CAGTTGCAACGCGGCTGCGGCATGTATCGGGACTCGCGGGGAGAGCGCTG
GCGGCTGACGCCGCTGCTGCCACGCACCTCAACAGCAAGGGCTTCACCAC
TGTTGCAGCCGTATCTGCCGCACCACACCTCCCTGCCACTCGCATAGTGG
ATCGCAAGCACCGCATGGGTTTTGCCATGGAGCCTCAGCAGCCAGCCCTG
CTGTTGGTGCGGCGATTTAAGCATGGCTCACTGGGAAAGAAGGGTGAGCG
AGCAGCCTCTGAACTGTGCGGGCTGATGTCATTGCGAGCATGGCACCTCG
CTCCTCTGGCGCTGTTATCAAATGCGCACTGCTGATGTCCACCAGCAGGA
ACAGCATACTGCCACAGAATTGCATTACATGAACCGAAGCGTTGGAAGTT
TCGCTGGCGACCTGCGCACAGCAGCATTTCGAGCAATTTCCTGCACCGGT
GTGCCGCTGGTGCGCCGTCAGCTGCTGTGATTGGTATCCCTAAGCTCCTG
GAGTGCCCATACATGTATATGTCCTAGCATTAGCGCGGCATTGGCGATCC
GTTCCTCGAGTCAGTGCTCACAGCCCAAAGGCCACCAATCGTCGCCCCCC
CGCCCGTGCGCAGGCAAAAAAGCCGGCAAGACCTCCAGAGCCGAGCTCTA
CAACGCGCGCCCGGCGGCGGCGGCAGAGAGCATACCCCTGGATGACGAAT
CGTCCGTCTCCGACGCCGAACCCGAGGAGAGCGAGGAGGAGGAGCCCGCG
GATCAGGACTACGCCACCGTGGACGACTGCGCCCCGCTGGACGCGCTGAG
CGCGCGCCTCGACAGGGTGCTGGAGGGGCTGAAGAAGGACCTCGCGGTGC
TGCGCGGCGGGCGCGTGGACCCCGCCATGTGAGCGGTTGCTGTCGTGCGC
TGCAAGTATCGAGCATCGAGAACAGCTCTGTTAGTGAGAGACGCTGTGCG
CGTCGCAGCACACACATATCGCGCATCGGCAGCACCTCTGTGTGTGGCGG
AGCGCTGCCGTGCGCGCGGCTGCAGACACGTGTGTGCGTGTCGAGCGTCG
AGAACAGCGCTGTTAGTGGGAGAGACGCTGTGCGCGCGGCACACGCTCGC
GTATCGCGCACCGAAAGTACTTCTGAGCGTTTGCTGTCGCGTGCGCGCGC
TGCAGACACGTGTGTGTATCGGGCGTTGCGAACAGCGCTGTTAGTGAGGG
ACGCTGCGCGTGCCGCACACGCACGCGTATCGCGCACCGAAAGCACTGCT
GGTGTGGTGAGCGACGCTGTATGTGCTGCGCGGCTATCGTGCATCGGAAG
CAGTTTGGCAGTGGGAGGCGCTCTATCGCGAATGACATCACAAGTTTCGC
CGTGGTTCAGCGCTGCAGCAACTTGCAAGTACACGCTTGGTCACACCATC
GCGCGCTTTCTCACATGCCATATGCGCCAGCACATCAGGGCTGGCCATCC
ACAGTCAAGGTACCACGTCGACGACTCTCCTCAGAAGCGTAGCAGTGAAG
ACTTGGCCCTGAGAGGGCTGACGAAAGCGCACTCTTTTACTCAAGTGTTT
GCCATGCACCCTATGTGCCAATGCGGCGTCGGCAGGCACCGCAAATGCGC
ACTCCTCCGCAAATTGCAAATCAGGGCACGCAGTTCGTGCACGCCGATCG
CGCGCAGGTTTGTCCCGACGGGTACGGCATGAAAACGCTCTCTCTTGCAC
GAGTTTTATTCAATCCACGCACCGTGTTCTTAATGACGGCGCGCGCAGGT
TCGACCACCTCACGGTCCACTCGTACGGCCAGGAGGGTCCGCTGAGCAGC
GTGGCGCAGGTCTCCGCCAAGGGGCCGCAGCTCCTGGTGCTCACGTGCTA
CGACCCGGCGACGGCGCCGGCGGTCGTGGTCGCCGTGCGCGACAGCGGCA
TGAACCTCAATCCGCAGCTCGACGGCAACAAGGTGAGAGAGGGGTTTCGC
ATGTGCGTCGCGGCGTTCAGGGGGGGGGGGGTCTGGTTTGTTGCGCATGG
GATGGCAATCAGTTAAAGTTTGCGCCAAATTCGACTCTATCAAGGGGGGG
AGTTGGGTGTGGTGTAGGGGTGCGCTGCGTGCGCGATGGCGGCGCGCGAG
GGCGGCGCGCAGCGGCGCGAGGCGTGCACGCCAGTACCGTAGGGTCCTGG
GCAGGATCGTTGTCGCCGTCGCCATGGGCGTGTTGTCCATCTGCAAGTTG
CAAGTTACCAAGTCCTCGGCGCGTTGAGCTACTCGAGTCACTCAACCACA
CAAACTCAAGTCGCTGGCACGAGGTGGTGGTCTGGGACAGGTTTATCTCG
CCATGTCTCAGCCTGTACCATGCCCACCCTCACCTACCAAAGACGCTACA
GGAGGCGATGCTCGTACAGGTGCACGCTGTTCTCAACGCGGCCTCAGCTC
AATACCATGAGTATCATACCCGGCTTTGCGGCATCTGCTTATTGTCTGGA
CTGGGTACCCCCCAATGGTCATTGCCCTCCCAGCAGCAAGAGGTCGTGGA
AGCGACACATTGCGAGATCGCCCCTTGCTGCGCTCGATTGTGACTTCAAC
TGTAGCGACTTCAACAACTGTTGCTCTCGTACAGCACCCGATGTTCATCA
TTGGCAGCAGCATCTCATCGTACATCGCGAATTGCTTGCTGCGCAGGTGC
TGGTGCCAATACCGAAGATGAGCCATGAGACGCGTGAGAGCCTCGTCAAA
GTCGCCAACAAGGCCACCGAAAAAGCCAAGGTGCGTAAGACCGTGGATGG
GTCGATGACATGGATGTGATTGTTGCCAGTGAAGGGCTGATGTGCAGCTT
TGTCGACTTGTGTGCAGCACACATTCAATTGGTGCGCACAGGCACGGTGA
ACCTGCATTCCGTCAGATTTGCGGTAGCAGCAGGACCGTAGCGGGGGTGT
ATTTTGAAGTGCAGAATGACAACTTGAACTTCAGCAGCAATTGCGCGAGC
GCGCACACGCCTGGCGACAAAAATGATCGTTGTAACGGTTGTCGCTCATG
ACAGAGTCTCGTTGCTTCTGTTGAGGAGGCGGCATCGTATCAGTGGCCAG
ATCCCACAAATCATACGACGCAAGCGCTAACTATGCTTCTTGCCTGTACC
CCTGCCCGCTTGCCTGCAGGTGCACATGCGCGGCATCCGGCACAAGGTCC
TGGAGCGTTTGAAAAAGCATAAGGCCAACTTCAGCGAGGACGACGTGCAC
CGCAGACACAAGGAGGTCAGCTTGTCAACAACCTCAGTACTGCGTACTTC
AGCAAGTTTTGCGGCCCGCATTTTGTCACTGTCCTCATCACACAGCTGAA
GGAGTCCGAGGTGGCGCCACCTCTTTCAAGATCGCATGTGTGTAAGAGCT
TTGTCATTGCCAGCGCCGCTGTGCCGCAGCATCCATTGACTGCGAGCATC
GCTTTAACGCTGAAAGCACCTTTATGCAGGGGCTTGGGCAGCGTGAACAT
GAGCTCATGCCTGCAGCCAGCACACGCGTGTCAGGTTTGCGACAGCACGC
AAAGCTTTCTCGGAGTCCCACCACATAGGCAGGTCGTGTGTTCGGGTATG
TGCGCAGCCTGTGTGACGCGCTGCCTGGTTGCGCGCGACGCCTGTGATGT
GCTCAAGACCTGCAATGTCTGCTGCGCGCTCAGCGTGTTGGCAGTACGGC
CATGCGACGGCATATGCCACACCGCTCCATGGTCAAGGGCGAGTTCATCT
GTACACTGAGTGGGTACACACACTGAGTGGGTACACACACACACGGTACC
GTGTGGCCAGCCGGCCAGATCGGTCACACATCGCCCTAGCGGTGATGAAA
ATGAATCAAAAGATCGTAGAGCTCTAGGTGACAAGGTGTGGTTAGCCGCA
AGTGACTTCCACCAATAACCGTGGTGGCCGCGGCTGCAGTCATTGGCCAC
GTTGATACTTTAATGTGTAGGTTTTTTCGTTCGCGAGCAGTCCAGGCACG
CGCGTCGCAACACAACCGCCTGGTGCTGCACCCTGGGCATGCTGCTGACG
CGCTGACATGCGTGTGCCTGCTGCTGTGCTGTTCTGATGGCAGATCGACA
CCAAGATCGCCGCGATGGAGGCCAAGTGCGCGGCAGCGCTCGACGCCAAG
AAGAAGGACATACTGTCCGCCTAGCCCGCAGCTTCAGCGACCACACGCAT
CTCCCAAGCACAAATATAGCGTGCAGTTGGCCCTGACATTGTGTCGGGGG
GTCCTTCTACAGCTGGAGGGGCCCGACCGGAGCTGTTACAGTAATCTGTG
ATCGTCGTCAATCACAGCGGTGTGCCCCACCTAGGCATGTTGCTTGAGGC
ATCCGCTACTCCAGGGACACAAATATCACGCCTGCGATGCAATGTGCCTG
CAGACCGTTGCTGGTAGATCACACATGCTGTCAGACCAGACGCTCTGACA
CGCGCACGCAATCACAGACACTTGGCATGAGTCAGAGATACGATGTGGCG
TCAGTGTCCGCGCGCAGCATTGCTCTGCGGCGATCCAGCCTTCAGAGCCC
TGACTTGGCCTAGGGCACATGAATACAGACATGTCTCACCA
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Coding sequence (CDS) from alignment at Contig_16:101789..106379+

>mRNA_2925 ID=mRNA_2925|Name=jgi.p|Trimin1|347783|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1008bp|location=Sequence derived from alignment at Contig_16:101789..106379+ (Tribonema minus UTEX_B_3156 )
ATGCGGGCATCAGCGGCCAGAGCAGTTGCAACGCGGCTGCGGCATGTATC
GGGACTCGCGGGGAGAGCGCTGGCGGCTGACGCCGCTGCTGCCACGCACC
TCAACAGCAAGGGCTTCACCACTGTTGCAGCCGTATCTGCCGCACCACAC
CTCCCTGCCACTCGCATAGTGGATCGCAAGCACCGCATGGGTTTTGCCAT
GGAGCCTCAGCAGCCAGCCCTGCTGTTGGTGCGGCGATTTAAGCATGGCT
CACTGGGAAAGAAGGGCAAAAAAGCCGGCAAGACCTCCAGAGCCGAGCTC
TACAACGCGCGCCCGGCGGCGGCGGCAGAGAGCATACCCCTGGATGACGA
ATCGTCCGTCTCCGACGCCGAACCCGAGGAGAGCGAGGAGGAGGAGCCCG
CGGATCAGGACTACGCCACCGTGGACGACTGCGCCCCGCTGGACGCGCTG
AGCGCGCGCCTCGACAGGGTGCTGGAGGGGCTGAAGAAGGACCTCGCGGT
GCTGCGCGGCGGGCGCGTGGACCCCGCCATGTTCGACCACCTCACGGTCC
ACTCGTACGGCCAGGAGGGTCCGCTGAGCAGCGTGGCGCAGGTCTCCGCC
AAGGGGCCGCAGCTCCTGGTGCTCACGTGCTACGACCCGGCGACGGCGCC
GGCGGTCGTGGTCGCCGTGCGCGACAGCGGCATGAACCTCAATCCGCAGC
TCGACGGCAACAAGGGCGGCGCGCAGCGGCGCGAGGCGTGCACGCCAGTG
CTGGTGCCAATACCGAAGATGAGCCATGAGACGCGTGAGAGCCTCGTCAA
AGTCGCCAACAAGGCCACCGAAAAAGCCAAGGTGCACATGCGCGGCATCC
GGCACAAGGTCCTGGAGCGTTTGAAAAAGCATAAGGCCAACTTCAGCGAG
GACGACGTGCACCGCAGACACAAGGAGATCGACACCAAGATCGCCGCGAT
GGAGGCCAAGTGCGCGGCAGCGCTCGACGCCAAGAAGAAGGACATACTGT
CCGCCTAG
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